View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11294_low_24 (Length: 346)
Name: NF11294_low_24
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11294_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 148 - 330
Target Start/End: Complemental strand, 44798462 - 44798280
Alignment:
| Q |
148 |
ctgagcattgtgtagaattaagagtgatgaagttttcaagaatttgttttcatggtaaagatgaaggagagagagtgatacacatactcaatctgtttct |
247 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44798462 |
ctgagcattgtgtagaattaagagtggtgaagttttcaagaatttgttttcatggtaaagatgaaggagagagagtgatacacatactcaatctgtttct |
44798363 |
T |
|
| Q |
248 |
tggcctaatcttgaattgttgtgtcttctaaattcaaacaaaacattacatttctagttatgattcttcacataggaccattg |
330 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
44798362 |
tgttctaatcttgaattgttgtgtcttctaaattcaaacaaaacattacatttttagttaggattcttcacataggaccattg |
44798280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 44798609 - 44798533
Alignment:
| Q |
1 |
agacaagagtgttgttgttttgtgagagtaatggcagtgtctgtgtaggaagcatcaccaaagagtgtgatgttttg |
77 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44798609 |
agacaagtgtgttgttgttttgtgagagtaatggaagtgtctgtgtaggaagcatcaccaaagagtgtgatgttttg |
44798533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University