View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11294_low_26 (Length: 296)
Name: NF11294_low_26
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11294_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 45283030 - 45283306
Alignment:
| Q |
1 |
agatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgctggag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45283030 |
agatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctggag |
45283129 |
T |
|
| Q |
101 |
gatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283130 |
gatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctca |
45283229 |
T |
|
| Q |
201 |
ccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatc |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45283230 |
ccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaattcctcatatc |
45283306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 45294418 - 45294694
Alignment:
| Q |
1 |
agatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgctggag |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
45294418 |
agatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgctggag |
45294517 |
T |
|
| Q |
101 |
gatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
45294518 |
gatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttcttctca |
45294617 |
T |
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| Q |
201 |
ccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatc |
277 |
Q |
| |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
45294618 |
ccgtcattttcatcgtcaaatccttccatacaagcttgtctgtaagagataactgcactcaaccaattcctcatatc |
45294694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 45303378 - 45303654
Alignment:
| Q |
1 |
agatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgctggag |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
45303378 |
agatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgctggag |
45303477 |
T |
|
| Q |
101 |
gatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
45303478 |
gatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttcttctca |
45303577 |
T |
|
| Q |
201 |
ccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatc |
277 |
Q |
| |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
45303578 |
ccgtcattttcatcgtcaaatccttccatacaagcttgtctgtaagagataactgcactcaaccaattcctcatatc |
45303654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 45271256 - 45271532
Alignment:
| Q |
1 |
agatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgctggag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||| |
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| T |
45271256 |
agatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaattgctggag |
45271355 |
T |
|
| Q |
101 |
gatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctca |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| || || ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45271356 |
gatgtcagacaaaccagtcacaatgtcaagggcaacggctgtgaccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcttctca |
45271455 |
T |
|
| Q |
201 |
ccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatc |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| |||||||| |
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| T |
45271456 |
ccatcatttgcatcgtcaaatccttccatacaaccttgtttgtaagagataactgcactcaaccaattcctcatatc |
45271532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 45274789 - 45275065
Alignment:
| Q |
1 |
agatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgctggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||| |
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| T |
45274789 |
agatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgctggag |
45274888 |
T |
|
| Q |
101 |
gatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
45274889 |
gatgtcggacaaaccagtcacaatgtcaagggcaaccgcggtgatcttttgtacgctgtccaaactctgaacatggaattgctctttgattttcttctca |
45274988 |
T |
|
| Q |
201 |
ccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatc |
277 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||| || || || |||||||||||||| |||||||| |
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| T |
45274989 |
ccatcatttgcatcgtcaaatccttccatacaggcttgtctgtaggatatgactgcactcaaccaattcctcatatc |
45275065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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