View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11294_low_3 (Length: 659)

Name: NF11294_low_3
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11294_low_3
NF11294_low_3
[»] chr1 (14 HSPs)
chr1 (18-349)||(45214657-45214987)
chr1 (370-638)||(28244199-28244479)
chr1 (370-638)||(11476555-11476853)
chr1 (370-439)||(11318763-11318832)
chr1 (370-439)||(11471322-11471391)
chr1 (370-439)||(17430769-17430839)
chr1 (385-439)||(17431703-17431757)
chr1 (370-439)||(50017608-50017677)
chr1 (531-632)||(17431502-17431601)
chr1 (538-593)||(11318579-11318633)
chr1 (385-432)||(50027519-50027566)
chr1 (217-259)||(45207660-45207702)
chr1 (529-582)||(50017778-50017830)
chr1 (481-521)||(11318671-11318711)
[»] chr6 (4 HSPs)
chr6 (370-638)||(19305851-19306123)
chr6 (370-638)||(10122332-10122611)
chr6 (370-439)||(10126551-10126620)
chr6 (385-439)||(19310337-19310391)
[»] chr7 (4 HSPs)
chr7 (370-638)||(22489252-22489532)
chr7 (374-439)||(22492408-22492473)
chr7 (370-439)||(48944292-48944361)
chr7 (394-438)||(48072491-48072535)
[»] chr2 (6 HSPs)
chr2 (370-438)||(43159350-43159418)
chr2 (370-439)||(38250105-38250174)
chr2 (370-439)||(38255469-38255538)
chr2 (370-438)||(43154102-43154170)
chr2 (538-638)||(38250304-38250409)
chr2 (538-638)||(43159116-43159221)
[»] chr5 (7 HSPs)
chr5 (370-571)||(25383924-25384134)
chr5 (378-439)||(25482726-25482787)
chr5 (370-439)||(25379448-25379517)
chr5 (392-439)||(25484266-25484313)
chr5 (392-438)||(10292976-10293022)
chr5 (596-633)||(25383881-25383918)
chr5 (370-433)||(23231600-23231664)
[»] chr4 (5 HSPs)
chr4 (370-439)||(28167592-28167662)
chr4 (374-439)||(54362234-54362300)
chr4 (370-431)||(48792819-48792880)
chr4 (372-439)||(28166913-28166981)
chr4 (394-434)||(48796046-48796086)
[»] chr3 (2 HSPs)
chr3 (531-629)||(33862946-33863043)
chr3 (386-439)||(33862375-33862428)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 45214657 - 45214987
Alignment:
Q  18 gaaatgagttagtggactttttattagtcatcgatttcaagcaatacaaacctcacatcatttcatgttat-acgtgactatgttgaagatgtgtggaag 116  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45214657 gaaatgagtttgtggactttttattagtcatcgatttcaaacaatacaaacctcacatcatttcatgttattacgtgactatgttgaagatgtgtggaag 45214756  T
Q  117 tggaaagtaattaatagggtcacaaacttttcagcctgactagaaaatgaaacatttttgcagagaaatgatctttatttataggatagtcaaacggtct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45214757 tggaaagtaattaatagggtcacaaacttttcagcctgactagaaaatgaaacatttttgcagagaaatgatctttatttataggatagtcaaacggtct 45214856  T
Q  217 ttgtttgcatggagagatacccttttgggaaataattaagaaaagacaaaagatcagaagaaaataatggattagaaacnnnnnnnnntgtgtaatagag 316  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||          |||||||||||    
T  45214857 ttgtttgcatggagagatacccttttgggaaataattaag-aaagacaaaagatcagaagaaaataatggattagaaacaaaaaaaaa-gtgtaatagag 45214954  T
Q  317 gaggatcaggatggaccagtggcaatagcaatg 349  Q
    |||||||||||||||||||||||||||||||||    
T  45214955 gaggatcaggatggaccagtggcaatagcaatg 45214987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 370 - 638
Target Start/End: Original strand, 28244199 - 28244479
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgt--ggcacacccttttnnnnnnnnnnntttaattaaatgagaat 467  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||           |  ||||||| ||||||    
T  28244199 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtatggcacaccctttttaaaaaaaaaatc-aattaaaggagaat 28244297  T
Q  468 aagaga--acacg------atagaacagtgaaaactcaaaaacccattcctcttctcttctctcctacgatgaacccaccacccacct----tcaacttt 555  Q
    ||||||  |||||      | |||| |||||||| |||||||| ||||||||||||||||||   ||||| ||||||||||||||||     ||||||||    
T  28244298 aagagagaacacgtgactgagagaagagtgaaaaatcaaaaacgcattcctcttctcttctccagtacgacgaacccaccacccacccaccatcaacttt 28244397  T
Q  556 tctctcgccaccgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttctctgctgc 638  Q
    |||| |||||||||||||||||||||||| |||||| |||||||||||||||| ||| |||||||||||||||||||| ||||    
T  28244398 tctc-cgccaccgccgacacttccctccgtcgccgctgtcctctccgccaacggccatcgttcctcttcactttctctcctgc 28244479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 370 - 638
Target Start/End: Complemental strand, 11476853 - 11476555
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt--nnnnnnnnnnntttaattaaatgagaat 467  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||             || ||||||| ||||||    
T  11476853 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacacccttttaaaaaaaaaaaaattcaattaaaggagaat 11476754  T
Q  468 a--agagaacac------gatagaacagtgaaaactcaaaaacccattcctcttctcttc-----------tctcc--tacgatgaacccaccacc---- 542  Q
    |  |||||||||      || |||| |||||||| |||||||| ||||||||||||||||           |||||  ||||| ||||||||||||        
T  11476753 aagagagaacacgtgactgagagaagagtgaaaaatcaaaaacacattcctcttctcttctcctcttctcttctccagtacgacgaacccaccacccacc 11476654  T
Q  543 ----caccttcaacttttctctcgccaccgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttctctgctgc 638  Q
        |||| |||||||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  11476653 cacccaccatcaacttttctc-ccccaccgccgacgcttccctccgccaccgccgtcctctccgccaacggccaccgttcctcttcactttctcttctgc 11476555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 370 - 439
Target Start/End: Complemental strand, 11318832 - 11318763
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 439  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  11318832 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacaccctttt 11318763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 370 - 439
Target Start/End: Original strand, 11471322 - 11471391
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 439  Q
    |||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11471322 tgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 11471391  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 370 - 439
Target Start/End: Original strand, 17430769 - 17430839
Alignment:
Q  370 tgtgtaacattgggt-attttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 439  Q
    ||||||||||||||  |||||| ||||||||| |||| ||||||||| |||||||||||||||||| ||||    
T  17430769 tgtgtaacattggggcattttatgttatataatattgtccaatcaggatgtgccacgtggcacaccatttt 17430839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 385 - 439
Target Start/End: Complemental strand, 17431757 - 17431703
Alignment:
Q  385 attttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 439  Q
    |||||| |||||||||||||| ||||||||||||||||| |||||||||| ||||    
T  17431757 attttatgttatataacattgtccaatcagggtgtgccatgtggcacaccttttt 17431703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 370 - 439
Target Start/End: Original strand, 50017608 - 50017677
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 439  Q
    |||||||||| | | |||||| |||||||||||||| ||||| ||| | |||||||||||||||||||||    
T  50017608 tgtgtaacatagtggattttatgttatataacattgtccaataaggatatgccacgtggcacaccctttt 50017677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 632
Target Start/End: Complemental strand, 17431601 - 17431502
Alignment:
Q  531 gaacccaccacccaccttcaacttttctctcgccaccgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttc 630  Q
    |||| ||||||||||| |||||| | ||| |||||||||||| |  ||| ||| |||||| | |||||||||||| |||||||| ||||||||| |||||    
T  17431601 gaactcaccacccaccatcaactatcctc-cgccaccgccgatatctcc-tcctccgccgtcctcctctccgccatcgaccacctttcctcttctctttc 17431504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 538 - 593
Target Start/End: Complemental strand, 11318633 - 11318579
Alignment:
Q  538 ccacccaccttcaacttttctctcgccaccgccgacacttccctccgccgccgccg 593  Q
    ||||||||| |||||||||||| | ||||||||||| |||||||||||| ||||||    
T  11318633 ccacccaccatcaacttttctccc-ccaccgccgacgcttccctccgcctccgccg 11318579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 385 - 432
Target Start/End: Complemental strand, 50027566 - 50027519
Alignment:
Q  385 attttaagttatataacattgcccaatcagggtgtgccacgtggcaca 432  Q
    |||||| ||||| ||| |||||||||||| ||||||||||||||||||    
T  50027566 attttatgttatgtaatattgcccaatcaaggtgtgccacgtggcaca 50027519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 45207660 - 45207702
Alignment:
Q  217 ttgtttgcatggagagatacccttttgggaaataattaagaaa 259  Q
    ||||||||||| ||||||||| ||||||||||| |||||||||    
T  45207660 ttgtttgcatgaagagataccattttgggaaatgattaagaaa 45207702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 582
Target Start/End: Original strand, 50017778 - 50017830
Alignment:
Q  529 atgaacccaccacccaccttcaacttttctctcgccaccgccgacacttccctc 582  Q
    |||||| |||||||||||||||||| | ||| ||||||||||||||| ||||||    
T  50017778 atgaactcaccacccaccttcaactatcctc-cgccaccgccgacacctccctc 50017830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 521
Target Start/End: Complemental strand, 11318711 - 11318671
Alignment:
Q  481 agaacagtgaaaactcaaaaacccattcctcttctcttctc 521  Q
    |||| |||||||| |||||||| ||||||||||||||||||    
T  11318711 agaagagtgaaaaatcaaaaacacattcctcttctcttctc 11318671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 370 - 638
Target Start/End: Original strand, 19305851 - 19306123
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacacccttttnnnnnnnnnnntttaattaaatgagaataa 469  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||            | ||||||| ||||||||    
T  19305851 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtggcacacccttttttaaaaaaaaaatcaattaaaggagaataa 19305950  T
Q  470 gagaacacgat----agaaca-gtgaaaactcaaaaacccattcctcttctcttctctcctacgatgaacccaccacccaccttcaacttttctctcgcc 564  Q
    ||||||  ||     |||||| ||||||| | |||||| ||||||||||||||||||   ||||| |||||||||||||||| |||||||||||| ||||    
T  19305951 gagaacgtgactaagagaacaagtgaaaaataaaaaacgcattcctcttctcttctcctgtacgacgaacccaccacccaccatcaacttttctc-cgcc 19306049  T
Q  565 accgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttctctgctgc 638  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19306050 accgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttctctcctgc 19306123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 370 - 638
Target Start/End: Original strand, 10122332 - 10122611
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacacccttttnnnnnnnnnnntttaattaaatgagaataa 469  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||            | ||||||| ||||||||    
T  10122332 tgtgtaacattgggtattttatgttatataacattgtccaatcagggtgtgccacgtggcacaccctttttaaaaaaaaaaatcaattaaaggagaataa 10122431  T
Q  470 gaga--acacg------atagaacagtgaaaactcaaaaacccattcctcttctcttctctcctacgatgaacccaccacccacct----tcaacttttc 557  Q
    ||||  |||||      | |||| |||||||| |||||||| ||||||||||| ||||||   ||||| ||||||||||||||||     ||||||||||    
T  10122432 gagagaacacgtgactgagagaagagtgaaaaatcaaaaacgcattcctcttcacttctccagtacgacgaacccaccacccacccaccatcaacttttc 10122531  T
Q  558 tctcgccaccgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttctctgctgc 638  Q
    || ||||||||||||||||| ||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||||    
T  10122532 tc-cgccaccgccgacacttacctccgccgtcgccgtcctctccgccaacggccatcgttcctcttcactttctctcctgc 10122611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 370 - 439
Target Start/End: Complemental strand, 10126620 - 10126551
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 439  Q
    |||||||||| | | |||||| |||||||||||||| ||||| |||||||||||||||||||||||||||    
T  10126620 tgtgtaacatagtggattttatgttatataacattgtccaataagggtgtgccacgtggcacaccctttt 10126551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 439
Target Start/End: Complemental strand, 19310391 - 19310337
Alignment:
Q  385 attttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 439  Q
    |||||| |||||||||||||| ||||| ||| |||||||||||||||||| ||||    
T  19310391 attttatgttatataacattgtccaataaggatgtgccacgtggcacaccttttt 19310337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 370 - 638
Target Start/End: Original strand, 22489252 - 22489532
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacacccttttnnnnnnnnnnnt---ttaattaaatgagaa 466  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||| | |||||||||||||               | ||||||| |||||    
T  22489252 tgtgtaacattgggtattttaagttatataacattgttcaatcagggtgtgccatgcggcacacccttttttctataaaaaaaactcaattaaaggagaa 22489351  T
Q  467 taagagaacacg------atagaaca-gtgaaaactcaaaaacccattcctcttctcttctctcctacgat----gaacccaccacccaccttcaacttt 555  Q
    ||||||||||||      | |||||| |||||||||||||||| || |||| |||||||||| |||||||     |||||||||||||||| ||| ||||    
T  22489352 taagagaacacgtgactcagagaacaagtgaaaactcaaaaacgcagtcctattctcttctcccctacgacatcagaacccaccacccaccatca-cttt 22489450  T
Q  556 tctctcgccaccgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttctctgctgc 638  Q
    |||| ||||||||||||||| |||||||| ||||  | |||||||| ||| ||||||||||||||||||||||||||| ||||    
T  22489451 tctc-cgccaccgccgacacctccctccgtcgccatcctcctctccaccatcgaccaccgttcctcttcactttctctcctgc 22489532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 374 - 439
Target Start/End: Complemental strand, 22492473 - 22492408
Alignment:
Q  374 taacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 439  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22492473 taacattgggtattttaagttatataacattgcccaatcaggatgtgccacgtggcacaccctttt 22492408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 370 - 439
Target Start/End: Original strand, 48944292 - 48944361
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 439  Q
    |||||||||||||  |||||| ||||||||||||||  || |||||||||||||||||||||||| ||||    
T  48944292 tgtgtaacattggacattttatgttatataacattgttcagtcagggtgtgccacgtggcacaccttttt 48944361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 394 - 438
Target Start/End: Complemental strand, 48072535 - 48072491
Alignment:
Q  394 tatataacattgcccaatcagggtgtgccacgtggcacacccttt 438  Q
    |||||| ||||||||||| ||  ||||||||||||||||||||||    
T  48072535 tatataccattgcccaattagaatgtgccacgtggcacacccttt 48072491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 370 - 438
Target Start/End: Complemental strand, 43159418 - 43159350
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacacccttt 438  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43159418 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtggcacacccttt 43159350  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 370 - 439
Target Start/End: Original strand, 38250105 - 38250174
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 439  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  38250105 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacaccctttt 38250174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 370 - 439
Target Start/End: Complemental strand, 38255538 - 38255469
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 439  Q
    |||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38255538 tgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 38255469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 370 - 438
Target Start/End: Original strand, 43154102 - 43154170
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacacccttt 438  Q
    |||||||||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43154102 tgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacacccttt 43154170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 538 - 638
Target Start/End: Original strand, 38250304 - 38250409
Alignment:
Q  538 ccacccaccttcaacttttctctcgccaccgccgacacttccctc------cgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttct 631  Q
    ||||||||| |||||||||||| | ||||||||||| ||||||||      ||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  38250304 ccacccaccatcaacttttctccc-ccaccgccgacgcttccctccgcctccgccgccgccgtcctctccaccaacggccaccgttcctcttcactttct 38250402  T
Q  632 ctgctgc 638  Q
    || ||||    
T  38250403 cttctgc 38250409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 538 - 638
Target Start/End: Complemental strand, 43159221 - 43159116
Alignment:
Q  538 ccacccaccttcaacttttctctcgccaccgccgacacttc------cctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttct 631  Q
    ||||||||| |||||||||||| | ||||||||||| ||||      ||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  43159221 ccacccaccatcaacttttctc-ccccaccgccgacgcttccctccgcctccgccgccgccgtcctctccaccaacggccaccgttcctcttcactttct 43159123  T
Q  632 ctgctgc 638  Q
    || ||||    
T  43159122 cttctgc 43159116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 370 - 571
Target Start/End: Complemental strand, 25384134 - 25383924
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacacccttttnnnnnnnnnnntttaattaaatgagaataa 469  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||            | ||||||| ||||||||    
T  25384134 tgtgtaacattgggtattttaagttatataacatggtccaatcagggtgtgccacgtggcacacccttttaaaaaaaaaaa-tcaattaaaggagaataa 25384036  T
Q  470 gagaacac------gatagaac-agtgaaaactcaaaaacccattcctcttctcttctctcctacga----tgaacccaccacccaccttcaacttttct 558  Q
     |||||||      || ||||| || |||||||||||||| |||||||||||||||||| ||| |||     |||||||||||||||| | |||||||||    
T  25384035 aagaacacgtgactgagagaacaagcgaaaactcaaaaacgcattcctcttctcttctcccctgcgacatcagaacccaccacccaccattaacttttct 25383936  T
Q  559 ctcgccaccgccg 571  Q
    | |||||||||||    
T  25383935 c-cgccaccgccg 25383924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 25482726 - 25482787
Alignment:
Q  378 attgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 439  Q
    ||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||    
T  25482726 attggatattttaagttatataacattgcccaattaggatgtgccacatggcacaccctttt 25482787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 370 - 439
Target Start/End: Original strand, 25379448 - 25379517
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 439  Q
    |||||||||| | | |||||| |||||||||||||| ||||| |||||||||||| ||||||||||||||    
T  25379448 tgtgtaacatagtggattttatgttatataacattgtccaataagggtgtgccacatggcacaccctttt 25379517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 392 - 439
Target Start/End: Complemental strand, 25484313 - 25484266
Alignment:
Q  392 gttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 439  Q
    |||||||||||||| ||||| |||||||||||||||||||| ||||||    
T  25484313 gttatataacattgtccaataagggtgtgccacgtggcacatcctttt 25484266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 438
Target Start/End: Complemental strand, 10293022 - 10292976
Alignment:
Q  392 gttatataacattgcccaatcagggtgtgccacgtggcacacccttt 438  Q
    |||||||||||||| ||||| | ||||||||||||||||||||||||    
T  10293022 gttatataacattggccaattaaggtgtgccacgtggcacacccttt 10292976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 596 - 633
Target Start/End: Complemental strand, 25383918 - 25383881
Alignment:
Q  596 ctctccgccaacgaccaccgttcctcttcactttctct 633  Q
    |||||||||||||||||||||| |||||||||||||||    
T  25383918 ctctccgccaacgaccaccgtttctcttcactttctct 25383881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 370 - 433
Target Start/End: Complemental strand, 23231664 - 23231600
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacg-tggcacac 433  Q
    |||||||||||||  |||||| |||| ||||||||| ||||||| ||||| ||||| ||||||||    
T  23231664 tgtgtaacattggccattttatgttacataacattgtccaatcaaggtgtaccacgatggcacac 23231600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 370 - 439
Target Start/End: Complemental strand, 28167662 - 28167592
Alignment:
Q  370 tgtgtaacattgggtattttaa-gttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 439  Q
    ||||||||||||||  |||||| |||||||||||||| | |||||||||||||||||| ||||||||||||    
T  28167662 tgtgtaacattgggggttttaatgttatataacattggcgaatcagggtgtgccacgtcgcacaccctttt 28167592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 374 - 439
Target Start/End: Original strand, 54362234 - 54362300
Alignment:
Q  374 taacattgggtattttaa-gttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 439  Q
    |||||||||| ||||| | |||||||||||||||| |||||||||||||||| ||||||||||||||    
T  54362234 taacattgggcatttttatgttatataacattgcctaatcagggtgtgccacatggcacaccctttt 54362300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 370 - 431
Target Start/End: Original strand, 48792819 - 48792880
Alignment:
Q  370 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcac 431  Q
    ||||||||||||   |||||| | ||||||||||||||||||||||||||||||||||||||    
T  48792819 tgtgtaacattgaccattttatggtatataacattgcccaatcagggtgtgccacgtggcac 48792880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 372 - 439
Target Start/End: Original strand, 28166913 - 28166981
Alignment:
Q  372 tgtaacattgggtattttaa-gttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 439  Q
    ||||||||||||  |||||| |||||||||||||| | |||||||||||||||||||||||||| ||||    
T  28166913 tgtaacattgggggttttaatgttatataacattggcgaatcagggtgtgccacgtggcacaccttttt 28166981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 394 - 434
Target Start/End: Complemental strand, 48796086 - 48796046
Alignment:
Q  394 tatataacattgcccaatcagggtgtgccacgtggcacacc 434  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48796086 tatataacattgcccaatcagggtgtgccacgtggcacacc 48796046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 531 - 629
Target Start/End: Complemental strand, 33863043 - 33862946
Alignment:
Q  531 gaacccaccacccaccttcaacttttctctcgccaccgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcacttt 629  Q
    |||||||| ||| ||| |||||||||||| ||||||||||||||| ||||||| |||||| | ||||||| | || ||||||| |||||||||| ||||    
T  33863043 gaacccacaacctaccatcaacttttctc-cgccaccgccgacacctccctccaccgccgtcctcctctctgtcatcgaccactgttcctcttctcttt 33862946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 386 - 439
Target Start/End: Original strand, 33862375 - 33862428
Alignment:
Q  386 ttttaagttatataacattgcccaatcagggtgtgccacgtggcacaccctttt 439  Q
    ||||| ||||||||||| |||||| |||||||||||||| ||||||||||||||    
T  33862375 ttttatgttatataacactgcccattcagggtgtgccacatggcacaccctttt 33862428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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