View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11294_low_31 (Length: 262)
Name: NF11294_low_31
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11294_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 40002347 - 40002589
Alignment:
| Q |
1 |
catgtggatggcttggaattttctacaaatatccaaattaacatagcatgcacttcagaagatatcaaaccatgcgaggtccatagtttagccatccaaa |
100 |
Q |
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| T |
40002347 |
catgtggatggcttggaattttctgcaaatatccaaattgacatagcatgcacttcagaagatatcagaccatgcgaggtccatagtttagccatccaaa |
40002446 |
T |
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| Q |
101 |
gtaaagactgattcgctcaaacgaacttgtgttgcggtgctgcttatacagctccatgacaatagatctgtgacaacttgacccttcaagaaaataaaca |
200 |
Q |
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| T |
40002447 |
gtaaagactgattcgctcaaacgaacttgtgttgcggtgctgcttatacagctccatgacaatagatctgtgacaacctggcccttcaagaaaataaaca |
40002546 |
T |
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| Q |
201 |
tcatggcatgtgggtgacgatcctctatgtctccaccctagaa |
243 |
Q |
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| T |
40002547 |
tcatggcatgtgggtcacgatcctctatgtctccaccctagaa |
40002589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 245
Target Start/End: Original strand, 40002599 - 40002627
Alignment:
| Q |
217 |
acgatcctctatgtctccaccctagaaat |
245 |
Q |
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| T |
40002599 |
acgatcctctatgtctccaccctagaaat |
40002627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 26236222 - 26236280
Alignment:
| Q |
60 |
agatatcaaaccatgcgaggtccatagtttagccatccaaagtaaagactgattcgctc |
118 |
Q |
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| T |
26236222 |
agatatcagacaatgcgaggtccatatttgagccatctagagtaaagactaattcgctc |
26236280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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