View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11294_low_39 (Length: 238)
Name: NF11294_low_39
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11294_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 3811429 - 3811209
Alignment:
| Q |
3 |
ggtaagaattcacttgatgttattgagattgttgaagaatcagatattgagagtgaggaagaaggtagaaaacctgtcattagaaggatgaagcaaacat |
102 |
Q |
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| T |
3811429 |
ggtaagaattcacttgatgttattgagattgttgaagaatcagatattgagagtgaggaagaaggtagaaaacctgtcattagaaggatgaagcaaacat |
3811330 |
T |
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| Q |
103 |
ggcatgagaaagatgctgaagaaaatactaaagtggtggactctagagagtgtgtttcttcaacttttggtgtctttgacaatgacaaccttcatgacct |
202 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3811329 |
ggcatgagaaagatgcagaagaaaatactaaagtggtggactctagagagtgtgtttcttcaacttttggtgtctttgacaatgacaaccttcatgacct |
3811230 |
T |
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| Q |
203 |
taacgaaactatagaggaaga |
223 |
Q |
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||||||||||||||||||||| |
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| T |
3811229 |
taacgaaactatagaggaaga |
3811209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 27149557 - 27149777
Alignment:
| Q |
3 |
ggtaagaattcacttgatgttattgagattgttgaagaatcagatattgagagtgaggaagaaggtagaaaacctgtcattagaaggatgaagcaaacat |
102 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27149557 |
ggtaagaattcacctgatgttattgagattgttgaagaatcggatattgagagtgcggaagaatgtagaaaacctgtcattagaaggatgaagcaaacat |
27149656 |
T |
|
| Q |
103 |
ggcatgagaaagatgctgaagaaaatactaaagtggtggactctagagagtgtgtttcttcaacttttggtgtctttgacaatgacaaccttcatgacct |
202 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
27149657 |
ggcatgagaaagatgcagaagaaaatactaatgtggtggactctagagagtgtgtttcttcaacttcttgtgtctttgacaatgacaaccttcatgacct |
27149756 |
T |
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| Q |
203 |
taacgaaactatagaggaaga |
223 |
Q |
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||||||||||||||||||||| |
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| T |
27149757 |
taacgaaactatagaggaaga |
27149777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 175
Target Start/End: Original strand, 8434866 - 8435038
Alignment:
| Q |
3 |
ggtaagaattcacttgatgttattgagattgttgaagaatcagatattgagagtgaggaagaaggtagaaaacctgtcattagaaggatgaagcaaacat |
102 |
Q |
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|
||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8434866 |
ggtaagaattcacctgatgttgttgagattgttgaagaatcggatattgagagtgaggaagaaggtagaaaacctgttattagaaggatgaagcaaacat |
8434965 |
T |
|
| Q |
103 |
ggcatgagaaagatgctgaagaaaatactaaagtggtggactctagagagtgtgtttcttcaacttttggtgt |
175 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
8434966 |
ggcatgagaaagatgcagaagaaaatactaaagtgatggactctagagagtgtgtttcttcaacttctggtgt |
8435038 |
T |
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