View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11294_low_6 (Length: 519)
Name: NF11294_low_6
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11294_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 17 - 508
Target Start/End: Complemental strand, 6068482 - 6067989
Alignment:
| Q |
17 |
tcatgcatctcctttactaatgtggcttcatactccagtaacaatccgcaagtcattcttgtaaaacaaatttgactaccaagtcatactatctccttta |
116 |
Q |
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| T |
6068482 |
tcatgcatctcctttactaatgtggcttcatactccagtaacaatccgcaagtcattcttgtaaaacaaatttgactagcaagtcatactatctccttta |
6068383 |
T |
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| Q |
117 |
ctactttggcttctgatattgatagattattccaaaatgcaccaagaaatgctcgacaaatgaaatctac--cagactaccactgcgtgtgacctggatt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6068382 |
ctactttggcttctgatattgatagattattccaaaatgcgccaagaaatgctcgacaaatgaaatctacaccagactaccactgcgtgtgacctggatt |
6068283 |
T |
|
| Q |
215 |
ccattctgtcaatggaagcacggaatcagagtcataggacacctatgcatattctataagaaatggcgtgggatcaagggagaactagttagtgagctag |
314 |
Q |
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| T |
6068282 |
cctttctgtcaatggaagcacggaatcagagtcataggacacctatgcatattctataagaaatggtgtgggatcaagggagaactagttagtgagctag |
6068183 |
T |
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| Q |
315 |
aatatggttaccgcattttagggagggggatcttagtcatttagcctttatatgattcaacaagaggagtgtgggaatcattcagttttatggttgatag |
414 |
Q |
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| T |
6068182 |
aatatggttaccgcattttagggagggggatcttagtcatttagcctttatatgattcaacaagaggagtgtgggaatcattcagttttatggttgatag |
6068083 |
T |
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| Q |
415 |
ttgtggttaggagagttctctctctagtaggagctatgctttggaataggatcctttgactctggttatcgctttcgtcgttgtagagcttcat |
508 |
Q |
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| T |
6068082 |
ttgtggttaggagagttctctctctagtaggagttatgctttggaataggatcctttgactctggttatcgctttcgtcgttgtagagcttcat |
6067989 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 256 - 349
Target Start/End: Original strand, 48625264 - 48625360
Alignment:
| Q |
256 |
cctatgcatattctataagaaatggcgtgggatcaagggagaact--agttagtgagctagaatatggttaccgcat-tttagggagggggatctta |
349 |
Q |
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|||| |||||||||| ||||||| | ||||| ||||| ||| | | | |||||||||||||||||||||||||||| | |||||||||| |||||| |
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| T |
48625264 |
cctaggcatattctagaagaaatagagtggggtcaagagagtaatttatttagtgagctagaatatggttaccgcatctgtagggaggggaatctta |
48625360 |
T |
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