View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11294_low_7 (Length: 469)
Name: NF11294_low_7
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11294_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 35 - 319
Target Start/End: Complemental strand, 12533997 - 12533713
Alignment:
| Q |
35 |
gtgaacatgattacgaggagcttcttgctgaacataatattgttactttgtgtagaatagtgtctattattgtttgcaattgtgattccannnnnnngtt |
134 |
Q |
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| T |
12533997 |
gtgaacataattacaaggagcttctttctgaacataatattgttactttgtgtagaagagtgtctattattgttcgcaattgtgattccatttttttgtt |
12533898 |
T |
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| Q |
135 |
tgcactctttactacaccatatactttccaattaagcacatgtgtaatgcatcctatgccacttttaaatttgtacatgttaacttgtttggcaagactc |
234 |
Q |
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| T |
12533897 |
tgctctctttactacaccatatactttccaattaagcacatgtgtaatgcatcctatgccacttttaaatttgtacatgttaacttgtttggcaagactc |
12533798 |
T |
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| Q |
235 |
caattatgctcatagtcataatcatagaaaaagttttttatagacaaaacccctaaacaatccatcaaccaattccaagataaca |
319 |
Q |
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| T |
12533797 |
caattatgctcatagtcataatcatagaaaaagttttttatagacaaagcccctaaacaatccatcaaccaattccaagataaca |
12533713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 321 - 462
Target Start/End: Complemental strand, 12531547 - 12531403
Alignment:
| Q |
321 |
ccatcgaccacaagatcaagcttgtgacatcaatgaccccataatccca---ataagaaccgttggatctcccaaaacagctgacacaacaatcttttca |
417 |
Q |
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| T |
12531547 |
ccatccaccacaagatcaagatcgcgatatcaacgaccccataatcccagcaataagaaccgttggatctcccaaaacagctgagacaacgatctgtaca |
12531448 |
T |
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| Q |
418 |
gccattccagccatctcaacacacttcctcaccttccctatgctt |
462 |
Q |
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| T |
12531447 |
gccattccagccatctcagcacacttcctcaccttccctttgctt |
12531403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 321 - 395
Target Start/End: Complemental strand, 12533614 - 12533537
Alignment:
| Q |
321 |
ccatcgaccacaagatcaagcttgtgacatcaatgaccccataatcc---caataagaaccgttggatctcccaaaac |
395 |
Q |
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| T |
12533614 |
ccatcgaccacaagatcaagctcgtgacatcaatgaccccataatcccagcaataagaaccgttggctctcccaaaac |
12533537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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