View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11294_low_8 (Length: 459)
Name: NF11294_low_8
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11294_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 22 - 441
Target Start/End: Original strand, 37503727 - 37504146
Alignment:
| Q |
22 |
attgaagtagaagatgattccatggaaaatttcctcttcacaggttgtatttcttcttccatttattttgctaacaaattaagcaatattatttttattt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37503727 |
attgaagtagaagatgattccatggaaaatttcctcttcacaggttgtatttcctcttccatttattttgctaacaaattaagcaatattatttttattt |
37503826 |
T |
|
| Q |
122 |
ggtctttcactagatgatacaccagaatcaccatcatcattatctactctaataataatatcaaactctcctacattatgtgaccctaatcctctcccaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37503827 |
ggtctttcactagatgatacaccagaatcaccatcatcattatctactctaataataatatcaaactctcctacattatgtgaccctaatcctctcccaa |
37503926 |
T |
|
| Q |
222 |
cagcattatcagagctttctgtatgtccttgattctgagtctcaacagaaatatttgaaattgaatcaagttgatcagtgactgtgatactcacctctgc |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37503927 |
cagcattatcagagctttctgtatgtccttgattctgagtgtcaccagaaatatttgaaattgaatcaagttgatcagtgactgtgatactcacctctgc |
37504026 |
T |
|
| Q |
322 |
agcatcattgatcacaggtgcacgacacagcggacaattcttgtgtgaactaagccaagtatcaatacaagggatatgaaaagcgtggctacacttaggc |
421 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37504027 |
agcatcattgataacaggtgcacgacacagcggacaattcttgtgtgaactaagccaagtatcaatacaagggatatgaaaagcgtggctacacttaggc |
37504126 |
T |
|
| Q |
422 |
aaaattctgagactctcttc |
441 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
37504127 |
aaaattctgagactctcttc |
37504146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 438
Target Start/End: Original strand, 37227852 - 37227927
Alignment:
| Q |
363 |
tgtgtgaactaagccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctc |
438 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | ||||||||| ||| ||||||| ||||||| ||| ||| |||| |
|
|
| T |
37227852 |
tgtgtgatctaagccaagtatcaatacaaggtaaatgaaaagcatggttacactttggcaaaagtctaagattctc |
37227927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 438
Target Start/End: Original strand, 12617819 - 12617883
Alignment:
| Q |
374 |
agccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctc |
438 |
Q |
| |
|
||||| |||||||||||||| | ||||||||| |||||||| ||||| |||| ||| | |||||| |
|
|
| T |
12617819 |
agccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctc |
12617883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University