View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11294_low_9 (Length: 447)
Name: NF11294_low_9
Description: NF11294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11294_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 30512699 - 30512451
Alignment:
| Q |
1 |
ccatgccatcctcctttgctacttttgtcttcttcctggtgtaaaccttccaaactcctggtctaagtctacggtccaagcccactccaatagccaggtt |
100 |
Q |
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| T |
30512699 |
ccatgccatcctcctttgctacctttgtcttcttcctggtgtaaaccttccaaactcctggtctaagtctacggtccaagcccactccaatagccaggtt |
30512600 |
T |
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| Q |
101 |
tctattaggtccattgtccagttcccccattctcttcac---------ttgggattgagttgatacatcagtgatgccctgcaagataatgaaaaaacat |
191 |
Q |
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| T |
30512599 |
tctattaggtccattgtccagttcccccattctcttcacaccaccaatttgggattgagttgatatatcagtcatgccctgcaagataatgaaaaaacat |
30512500 |
T |
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| Q |
192 |
tactattaaatcttgcaagcaatattgaacaagaatgaaatcacatttt |
240 |
Q |
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| T |
30512499 |
tactactaaatcttgcaagcaatattgaacaagaatgaaatcacatttt |
30512451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 229 - 437
Target Start/End: Complemental strand, 30512433 - 30512224
Alignment:
| Q |
229 |
aaatcacattttagcaaacaaaataaatgaattcaattgcaaaaataattatgtaactatttattatatggtcaacaatacataccataggaccccct-n |
327 |
Q |
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| T |
30512433 |
aaatcacattttagcaaacaaaataaatgaattcaattgcaaaaataattatgtgactatttattatatggtcaacaatacataccataggaccccctaa |
30512334 |
T |
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| Q |
328 |
nnnnnnnnnnnnnntacataccataggatgtttttgtgcttcggaattttgaatttcatcattgttccctccagattctgaagcagtccttttgcccgtg |
427 |
Q |
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| T |
30512333 |
aaaaaaataaaaaatacataccataggatgtttttgtgtttcggaattttgaatttcatcattgttccctccagattctgaagcagtccttttacccgtg |
30512234 |
T |
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| Q |
428 |
gtttgattct |
437 |
Q |
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| T |
30512233 |
gtttgattct |
30512224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 226 - 320
Target Start/End: Complemental strand, 30534373 - 30534279
Alignment:
| Q |
226 |
atgaaatcacattttagcaaacaaaataaatgaattcaattgcaaaaataattatgtaactatttattatatggtcaacaatacataccatagga |
320 |
Q |
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| T |
30534373 |
atgaaatcacattttagcaaacaaaataaatgaattcaattacaaaaataattatgtaactatttattccatgggcagcaatacataccgtagga |
30534279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 226 - 320
Target Start/End: Complemental strand, 30495392 - 30495299
Alignment:
| Q |
226 |
atgaaatcacattttagcaaacaaaataaatgaattcaattgcaaaaataattatgtaactatttattatatggtcaacaatacataccatagga |
320 |
Q |
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| T |
30495392 |
atgaaatcacattttagcaaataaaa-aaatgaattcaattacaaaaattattatgtaactgtttattctatggtcaataatacataccatagga |
30495299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 30534292 - 30534234
Alignment:
| Q |
342 |
tacataccataggatgtttttgtgcttcggaattttgaatttcatcattgttccctcca |
400 |
Q |
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| T |
30534292 |
tacataccgtaggatgtttttgtccttcagaattttgcatttcatcattgttctctcca |
30534234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 394
Target Start/End: Complemental strand, 30495312 - 30495260
Alignment:
| Q |
342 |
tacataccataggatgtttttgtgcttcggaattttgaatttcatcattgttc |
394 |
Q |
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| T |
30495312 |
tacataccataggatgattttctccttcagaattttgcatttcatcattgttc |
30495260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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