View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11295_high_1 (Length: 920)
Name: NF11295_high_1
Description: NF11295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11295_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 881; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 881; E-Value: 0
Query Start/End: Original strand, 13 - 905
Target Start/End: Complemental strand, 35083900 - 35083008
Alignment:
| Q |
13 |
cagagatgaggaggctcaagcttgaactaaaacagactatggaaatgtatagttcagcttgcaaggaagcactcacagccaagcagaaggcaatagagct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35083900 |
cagagatgaggaggctcaagcttgaactaaaacagactatggaaatgtatagttcagcttgcaaggaagcactcacagccaagcagaaggcaatagagct |
35083801 |
T |
|
| Q |
113 |
tcaacgttggagatccgaagaagaaaggaagttggaagaggcaagagaaggggaaggagctgctatggctatggtagagatggagcaagaaaaatgtaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35083800 |
tcaacgttggagatccgaagaagaaaagaagttggaagaggcaagagaaggggaaggagcagctatggctatggtagagatggagcaagaaaaatgtaaa |
35083701 |
T |
|
| Q |
213 |
gctgcactaaaagcagctgaagcatctcagaagatcgcaacgttggaagcacaaaaacgaatgtatgtagagaagaaaagcgaaatggaagcaagtcaga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35083700 |
gctgcactaaaagcagctgaagcatctcagaagatcgcaacgttggaagcacaaaaacgaatgtatgtagagaagaaaagcgaaatggaagcaagtcaga |
35083601 |
T |
|
| Q |
313 |
ggaaaaagacggaagattcttataccactgctagatacagacgatacagtattgaggaaattgaagaggcaacaaaccggttttccgatagtcttaaaat |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35083600 |
ggaaaaagacggaagattcttataccactgctagatacagacgatacagtattgaggaaattgaagaggcaacaaaccggttttccgatagtcttaaaat |
35083501 |
T |
|
| Q |
413 |
tggtgaaggagggtatggtcctgttttcaaatgtgaacttgatcatacaccggttgctatcaaagtgttgaaatcagatgcagctcaaggaaggcaacaa |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35083500 |
tggtgaaggagggtatggtcctgttttcaaatgtgaacttgatcatacaccggttgctatcaaagtgttgaaatcagatgcagctcaaggaaggcaacaa |
35083401 |
T |
|
| Q |
513 |
tttaaccaggaagttgaagtgttgagttgtataagacatccaaacatggtccttctattgggagcatgtccggaatttggttgcatagtgtacgagtaca |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35083400 |
tttaaccaggaagttgaagtgttgagttgtataagacatccaaacatggtccttctgttgggagcatgtccggaatttggttgcatagtgtacgagtaca |
35083301 |
T |
|
| Q |
613 |
tggctaatggaagtttggatgattgtttgtttaggagaggtaaacaaccacctcttccttggcagttgagattccaaattgctgctgaaatagccactgg |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35083300 |
tggctaatggaagtttggatgattgtttgtttaggagaggtaaacaaccacctcttccttggcagttgagattccaaattgctgctgaaatagccactgg |
35083201 |
T |
|
| Q |
713 |
gcttcttttccttcaccagactaaaccagaaccgattgtgcatcgtgacttaaaacctggaaacattttgcttgaccgaaactatgtgagcaagattggt |
812 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35083200 |
gcttcttttccttcaccagactaaaccagaaccgattgtgcatcgtgacttaaaacctggaaacattttgcttgaccgaaactatgtgagcaagattggt |
35083101 |
T |
|
| Q |
813 |
gatgttggtttagcaaggcttgttcctccttctgttcaagacactgtcactcagtatcgcatgacttcgactgctggaactttctgttatatt |
905 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35083100 |
gatgttggtttagcaaggcttgttcctccttctgttcaagacactgtcactcagtatcgcatgacttcgactgctggaactttctgttatatt |
35083008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 8e-42; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 525 - 901
Target Start/End: Original strand, 42522509 - 42522891
Alignment:
| Q |
525 |
gttgaagtgttgagttgtataagacatccaaacatggtccttctattgggagcatgtccggaatttggttgcatagtgtacgagtacatggctaatggaa |
624 |
Q |
| |
|
||||||||||||||| | ||||| |||||| ||||||| || || | |||||||||||||| ||||||||| | ||||| ||| ||||| | ||||||| |
|
|
| T |
42522509 |
gttgaagtgttgagtagcataaggcatccacacatggttctcctccttggagcatgtccggagtttggttgcctggtgtatgagcacatgaccaatggaa |
42522608 |
T |
|
| Q |
625 |
gtttggatgattgtttgtttaggagag------gtaaacaaccacctcttccttggcagttgagattccaaattgctgctgaaatagccactgggcttct |
718 |
Q |
| |
|
| ||||||||||| | || |||||| ||||| |||| ||| || |||||| | ||||| | ||||||||| || || || || || || || |
|
|
| T |
42522609 |
gcttggatgattgcctattcaggagaaataatagtaaattaccagttctaccatggcagctaagatttcgaattgctgcggagattgcaaccggtctcct |
42522708 |
T |
|
| Q |
719 |
tttccttcaccagactaaaccagaaccgattgtgcatcgtgacttaaaacctggaaacattttgcttgaccgaaactatgtgagcaagattggtgatgtt |
818 |
Q |
| |
|
||||||||||||||| ||||| ||||| | ||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||| || | ||||| |
|
|
| T |
42522709 |
tttccttcaccagacaaaacctgaaccattggtgcaccgtgacttgaaacctggaaacattttgctcgaccggaactatgtgagcaaaatcagcgatgta |
42522808 |
T |
|
| Q |
819 |
ggtttagcaaggcttgttcctccttctgttcaagacactgtcactcagtatcgcatgacttcgactgctggaactttctgtta |
901 |
Q |
| |
|
|| | ||||||||||| ||||| || ||| |||||| || || |||||||||||||| | || ||||||||||||||||| |
|
|
| T |
42522809 |
gggctggcaaggcttgtccctccctcagttgcagacaccgtgacacagtatcgcatgacagcaaccgctggaactttctgtta |
42522891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 525 - 898
Target Start/End: Original strand, 42530717 - 42531096
Alignment:
| Q |
525 |
gttgaagtgttgagttgtataagacatccaaacatggtccttctattgggagcatgtccggaatttggttgcatagtgtacgagtacatggctaatggaa |
624 |
Q |
| |
|
||||||||||||||| | ||||| |||||| ||||||| || || | |||||||||||||| ||||||||| | ||||| ||| ||||| | ||||||| |
|
|
| T |
42530717 |
gttgaagtgttgagtagcataaggcatccacacatggttctcctccttggagcatgtccggagtttggttgcctggtgtatgagcacatgaccaatggaa |
42530816 |
T |
|
| Q |
625 |
gtttggatgattgtttgtttaggagag------gtaaacaaccacctcttccttggcagttgagattccaaattgctgctgaaatagccactgggcttct |
718 |
Q |
| |
|
| ||||||||||| | || |||||| ||||| |||| ||| || |||||| | ||||| | ||||||||| || || || || || || || |
|
|
| T |
42530817 |
gcttggatgattgcctattcaggagaaataatagtaaattaccagttctaccatggcagctaagatttcgaattgctgcggagattgcaaccggtctcct |
42530916 |
T |
|
| Q |
719 |
tttccttcaccagactaaaccagaaccgattgtgcatcgtgacttaaaacctggaaacattttgcttgaccgaaactatgtgagcaagattggtgatgtt |
818 |
Q |
| |
|
||||||||||||||| ||||| ||||| | ||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||| || | ||||| |
|
|
| T |
42530917 |
tttccttcaccagacaaaacctgaaccattggtgcaccgtgacttgaaacctggaaacattttgctcgaccggaactatgtgagcaaaatcagcgatgta |
42531016 |
T |
|
| Q |
819 |
ggtttagcaaggcttgttcctccttctgttcaagacactgtcactcagtatcgcatgacttcgactgctggaactttctg |
898 |
Q |
| |
|
|| | ||||||||||| ||||| || ||| |||||| || || |||||||||||||| | || |||||||||||||| |
|
|
| T |
42531017 |
gggctggcaaggcttgtccctccctcagttgcagacaccgtgacacagtatcgcatgacagcaaccgctggaactttctg |
42531096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 42529911 - 42529960
Alignment:
| Q |
42 |
aaacagactatggaaatgtatagttcagcttgcaaggaagcactcacagc |
91 |
Q |
| |
|
||||| || ||||||||||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
42529911 |
aaacaaacaatggaaatgtatagtacagcttgtaaggaagcactaacagc |
42529960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 714 - 847
Target Start/End: Original strand, 42673898 - 42674031
Alignment:
| Q |
714 |
cttcttttccttcaccagactaaaccagaaccgattgtgcatcgtgacttaaaacctggaaacattttgcttgaccgaaactatgtgagcaagattggtg |
813 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||| || | ||||| | ||||||| | | ||| ||||||| || |||||||| | | |
|
|
| T |
42673898 |
cttcttttccttcaccagacaaaaccagaaccggttgtgcatcgcgatctcaaaccagcaaacattctcttagacagaaactacgtaagcaagatcagcg |
42673997 |
T |
|
| Q |
814 |
atgttggtttagcaaggcttgttcctccttctgt |
847 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| |
|
|
| T |
42673998 |
atgttggtttggcaaggcttgttccaccttctgt |
42674031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 750 - 832
Target Start/End: Original strand, 45728163 - 45728245
Alignment:
| Q |
750 |
gtgcatcgtgacttaaaacctggaaacattttgcttgaccgaaactatgtgagcaagattggtgatgttggtttagcaaggct |
832 |
Q |
| |
|
||||||||||| || ||||| |||||||||||||| ||| | || ||||| | ||||| ||||||||||||| |||||||| |
|
|
| T |
45728163 |
gtgcatcgtgatttgaaacccggaaacattttgctggacaggaattatgtatgtaagataagtgatgttggtttggcaaggct |
45728245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 720 - 904
Target Start/End: Complemental strand, 50439550 - 50439366
Alignment:
| Q |
720 |
ttccttcaccagactaaaccagaaccgattgtgcatcgtgacttaaaacctggaaacattttgcttgaccgaaactatgtgagcaagattggtgatgttg |
819 |
Q |
| |
|
||||||||||| || ||||||||||| || || ||| | ||||| ||||| |||||||| ||||| ||| |||||||||| ||| ||| ||||||||| |
|
|
| T |
50439550 |
ttccttcaccaaacaaaaccagaacctatagtacatagagacttgaaaccaggaaacatcttgctagacagaaactatgtagccaaaattagtgatgttg |
50439451 |
T |
|
| Q |
820 |
gtttagcaaggcttgttcctccttctgttcaagacactgtcactcagtatcgcatgacttcgactgctggaactttctgttatat |
904 |
Q |
| |
|
|||| ||||| |||||||| || ||||| |||| ||| || || ||||||||||| | || || ||||| ||||||||||| |
|
|
| T |
50439450 |
gtttggcaagacttgttccgccatctgtggccgacagtgtgacgcaatatcgcatgacggcaacagcaggaacattctgttatat |
50439366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 549 - 637
Target Start/End: Complemental strand, 50439721 - 50439633
Alignment:
| Q |
549 |
catccaaacatggtccttctattgggagcatgtccggaatttggttgcatagtgtacgagtacatggctaatggaagtttggatgattg |
637 |
Q |
| |
|
|||||||||||||| || || || ||||| |||||||||| ||| || ||||||| ||||||||| | |||||||| ||||| ||||| |
|
|
| T |
50439721 |
catccaaacatggttctcctcttaggagcctgtccggaatatggatgtctagtgtatgagtacatgtcaaatggaagcttggaagattg |
50439633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 638
Target Start/End: Original strand, 1273773 - 1273874
Alignment:
| Q |
537 |
agttgtataagacatccaaacatggtccttctattgggagcatgtccggaatttggttgcatagtgtacgagtacatggctaatggaagtttggatgatt |
636 |
Q |
| |
|
||||| ||||| |||||||||||||| || || | ||||| |||||||||| || ||| | || || ||| ||||||| || |||||||||||||||| |
|
|
| T |
1273773 |
agttgcataaggcatccaaacatggttctcctcctaggagcctgtccggaatacggctgccttgtttatgagcacatggcgaacggaagtttggatgatt |
1273872 |
T |
|
| Q |
637 |
gt |
638 |
Q |
| |
|
|| |
|
|
| T |
1273873 |
gt |
1273874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University