View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11295_high_2 (Length: 743)

Name: NF11295_high_2
Description: NF11295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11295_high_2
NF11295_high_2
[»] chr7 (1 HSPs)
chr7 (18-733)||(28191822-28192537)


Alignment Details
Target: chr7 (Bit Score: 692; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 18 - 733
Target Start/End: Original strand, 28191822 - 28192537
Alignment:
Q  18 gagaaaagtaaagagactgataagtaaaaatacagagggattccttcagtatctacaacttacatgcccaaatatctttttagaacccactgttatccaa 117  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  28191822 gagaaaagcaaagagactgataagtaaaaatacagagggattccttcagtatctacaacttacatgcccaaatatctttttagaacccgctattatccaa 28191921  T
Q  118 caaaatcaatcttcttcagtgtcttcctcatcctcatccatagaatcatcctgcttttgatcctcctcgacatggtcgacaccctgagtttcttcatcgg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28191922 caaaatcaatcttcttcagtgtcttcctcatcctcatccatagaatcatcctgcttttgatcctcctcgacatggtcgacaccctgagtttcttcatcgg 28192021  T
Q  218 atattattgattcacgctttgtgatcactctaccatcttcatcaccagtgtcactacaactctcagtatctgaatcagatgaaccactatggtcttctcc 317  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28192022 atattattgatccacgctttgtgatcactctaccatcttcatcaccagtgtcactacaactctcagtatctgaatcagatgaaccactatggtcttctcc 28192121  T
Q  318 ccctcgacaagcagcatcttcaaattgttctttcaaatcaggagcaacaatgccaatcatctcacttagtgctcgccgctcgttttttctggcagctgca 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28192122 ccctcgacaagcagcatcttcaaattgttctttcaaatcaggagcaacaatgccaatcatctcacttagtgctcgccgttcgttttttctggcagctgca 28192221  T
Q  418 gcatcagaaggagtgtttggactctctgccaccacaatatttgaatcattcaatgtccctgaaccttcattattgtctctgctttttgaaggttcatttt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28192222 gcatcagaaggagtgtttggactctctgccaccacaatatttgaatcattcaatgtccctgaaccttcattattgtctctgctttttgaaggttcatttt 28192321  T
Q  518 cctcatgtaaagaaggagcagtactgcaagcccagctagcggcaacttcagaagttataaggtcttcggttctgattaggaggcatccagcttctgcacc 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28192322 cctcatgtaaagaaggagcagtactgcaagcccagctagcggcaacttcagaagttataaggtcttcggttctgattaggaggcatccagcttctgcacc 28192421  T
Q  618 ctcaatagtcttttgagtatctatgtgattatttgattgtgagtgttgtgaaagttcacgacaaggtattcgatcattcttctctgtttccataggtatt 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28192422 ctcaatagtcttttgagtatctatgtgattatttgattgtgagtgctgtgaaagttcacgacaaggtattcgatcattcttctctgtttccataggtatt 28192521  T
Q  718 tgatcaagcttctctg 733  Q
    ||||||||||||||||    
T  28192522 tgatcaagcttctctg 28192537  T

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