View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11295_high_4 (Length: 220)
Name: NF11295_high_4
Description: NF11295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11295_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 116 - 205
Target Start/End: Complemental strand, 42268260 - 42268171
Alignment:
| Q |
116 |
actagtaggagaaataagcaaacattagatcgtgtggttgaaaatattaatttctaaattacttctcaaatttcatttctaaatattcat |
205 |
Q |
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| T |
42268260 |
actagtaggagaaataagcaaacattagatcgtgtggttgaaaatattaatttctaaattacttctcaaatttcatttctaaatattcat |
42268171 |
T |
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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 42268356 - 42268323
Alignment:
| Q |
18 |
catactaaataaattacatcacaaatgattttct |
51 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
42268356 |
catactaaataaattacatcacaaatgattttct |
42268323 |
T |
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