View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11296_high_1 (Length: 678)
Name: NF11296_high_1
Description: NF11296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11296_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 641; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 19 - 663
Target Start/End: Complemental strand, 34315447 - 34314803
Alignment:
| Q |
19 |
gttatcgcgttgactcgcgctttgaagattctcggatcggaaggatcgctccaatgaacagaaccaacgtggcgactaccggagaaattgtagaagtgta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34315447 |
gttatcgcgttgactcgcgctttgaagattctcggatcggaaggatcgctccaatgaacagaaccaacgtggcgactaccggagaaattgtagaagtgta |
34315348 |
T |
|
| Q |
119 |
atccagcatcagattcagttccaacggcggcaatctccggccagactctgcaaattgaattgatctcatcgaggtgagtacgaacggttgcggaatggat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34315347 |
atccagcatcagattcagttccaacggcggcaatctccggccagactctgcaaattgaattgatctcatcgaggtgagtacgaacggttgcggaatggat |
34315248 |
T |
|
| Q |
219 |
tagattccagtcgtagctggagagttgaccaccgtgagcaatccaaacggaaccgttctccgcagcggtgaaagtagaagacaatccttccgatgcaggt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34315247 |
tagattccagtcgtagctggagagttgaccaccgtgagcaatccaaacggaaccgttctccgcagcggtgaaagtagaagacaatccttccgatgcaggt |
34315148 |
T |
|
| Q |
319 |
cggacggaggcaacgatggaagcgtcgatgccggagaacggaggtggagaagtagcatttcggagatgagagtcaataccatagaagagagcttcgtcgg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34315147 |
cggacggaggcaacgatggaagcgtcgatgccggagaacggaggtggagaagtagcatttcggagatgagagtcaataccatagaagagagcttcgtcgg |
34315048 |
T |
|
| Q |
419 |
cgagttcttgtttggagaagcggcgggcagtggagggaaggtggttggtgcggaggagagagaggaagacggagaagatttctgggtcgcggtctatgaa |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34315047 |
cgagttcttgtttggagaagcggcgggcagtggagggaaggtggttggtgcggaggagagagaggaagacggagaagatttctgggtcgcggtctatgaa |
34314948 |
T |
|
| Q |
519 |
aaccgggtttgggtcgttggaaaaacggtttgataatgcgaaaaggagagagtctggaccgccggaccggattgtggaaagagttgtttcgaagagctta |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34314947 |
aaccgggtttgggtcgttggaaaaacggtttgataatgcgaaaaggagagagtctggaccgccggaccggattgtggaaagagttgtttcgaagagctta |
34314848 |
T |
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| Q |
619 |
ccgccaacgtttagttttatgcggtcagttacgttggagtctgtg |
663 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34314847 |
ccgccaacgttgagttttatgcggtcagttacgttggagtctgtg |
34314803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 436 - 663
Target Start/End: Original strand, 22061025 - 22061248
Alignment:
| Q |
436 |
aagcggcgggcagtggagggaaggtggttggtgcggaggagagagaggaagacggagaagatttctgggtcgcggtctatgaaaaccgggtttgggtcgt |
535 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |||||||||| |
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| T |
22061025 |
aagcggcggctagtggagggaaggtggttggtgcggaggagagagaggaagacggagaagatttatgggttgcggtctatgaaaatcaaatttgggtcgt |
22061124 |
T |
|
| Q |
536 |
tggaaaaacggtttgataatgcgaaaaggagagagtctggaccgccggaccggattgtggaaa-gagttgtttcgaagagcttaccgccaacgtttagtt |
634 |
Q |
| |
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|| |||||||| |||| | |||||| | |||||| |||||| | |||||| ||||||| |||| | |||||||||||||||||| ||||||| ||| |
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| T |
22061125 |
tgaaaaaacggcttgagagtgcgaagaagagagaatctggatcaccggacaggattgtcgaaaggggttgtttcgaagagcttatcgccaac-----gtt |
22061219 |
T |
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| Q |
635 |
ttatgcggtcagttacgttggagtctgtg |
663 |
Q |
| |
|
|||||||||||||| |||| |||||||| |
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| T |
22061220 |
ttatgcggtcagttgcgtttaagtctgtg |
22061248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 494
Target Start/End: Complemental strand, 11201185 - 11201122
Alignment:
| Q |
431 |
tggagaagcggcgggcagtggagggaaggtggttggtgcggaggagagagaggaagacggagaa |
494 |
Q |
| |
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|||||||||||||| | ||||||| |||||||||||| |||||||||| ||| |||| ||||| |
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| T |
11201185 |
tggagaagcggcggacgatggaggggaggtggttggtgtggaggagagacaggtagacagagaa |
11201122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 128 - 480
Target Start/End: Complemental strand, 40947534 - 40947184
Alignment:
| Q |
128 |
cagattcagttccaacggcggcaatctccggccagactctgcaaattgaattgatctcatcgaggtgagtacgaacggttgcggaatggattagattcca |
227 |
Q |
| |
|
|||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |||||||| || | ||| |||||| ||||||||||||||||||| |
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| T |
40947534 |
cagattcagttccagcggcggcactctctggccagactctgcaaattgaattgatttcatcgagatgtgaacggacggttacggaatggattagattcca |
40947435 |
T |
|
| Q |
228 |
gtcgtagctggagagttgaccaccgtgagcaatccaaacggaaccgttctccgcagcggtgaaagtagaagacaatccttccgatgcaggtcggacggag |
327 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||| ||||||| || |||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
40947434 |
gtcgtagctggagagttgaccaccgatagcaatccaagtggaaccattctccgtggctgtgaaagtagaagataatccttccgatgcaggacggacggag |
40947335 |
T |
|
| Q |
328 |
gcaacgatggaagcgtcgatgccggagaacggaggtggagaagtagcatttcggagatgagagtcaataccatagaagagagcttcgtcggcgagttctt |
427 |
Q |
| |
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| |||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||| ||||||||||||||||||||||| ||| |||||||| |
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| T |
40947334 |
acgacgatggaagcgtcgatgccggagaacggaggcggagaagtagcgttgcggaggtgattgtcaataccatagaagagagctttatcg--gagttctt |
40947237 |
T |
|
| Q |
428 |
gtttggagaagcggcgggcagtggagggaaggtggttggtgcggaggagagag |
480 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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|
| T |
40947236 |
gtttggagaagcggcgggcagtggaggggaggtggttggcgcggaggagagag |
40947184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 128 - 480
Target Start/End: Complemental strand, 26956264 - 26955914
Alignment:
| Q |
128 |
cagattcagttccaacggcggcaatctccggccagactctgcaaattgaattgatctcatcgaggtgagtacgaacggttgcggaatggattagattcca |
227 |
Q |
| |
|
|||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |||||||| || | ||| |||||| ||||||||||||||||||| |
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| T |
26956264 |
cagattcagttccagcggcggcactctctggccagactctgcaaattgaattgatttcatcgagatgtgaacggacggttacggaatggattagattcca |
26956165 |
T |
|
| Q |
228 |
gtcgtagctggagagttgaccaccgtgagcaatccaaacggaaccgttctccgcagcggtgaaagtagaagacaatccttccgatgcaggtcggacggag |
327 |
Q |
| |
|
||||||||||| ||||||||| ||| |||||||||| |||||| ||||||| || |||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
26956164 |
gtcgtagctggtgagttgacctccgatagcaatccaagtggaaccattctccgtggctgtgaaagtagaagataatccttccgatgcaggacggacggag |
26956065 |
T |
|
| Q |
328 |
gcaacgatggaagcgtcgatgccggagaacggaggtggagaagtagcatttcggagatgagagtcaataccatagaagagagcttcgtcggcgagttctt |
427 |
Q |
| |
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| |||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||| ||||||||||||||||||||||| ||| |||||||| |
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| T |
26956064 |
acgacgatggaagcgtcgatgccggagaacggaggcggagaagtagcgttgcggaggtgattgtcaataccatagaagagagctttatcg--gagttctt |
26955967 |
T |
|
| Q |
428 |
gtttggagaagcggcgggcagtggagggaaggtggttggtgcggaggagagag |
480 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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|
| T |
26955966 |
gtttggagaagcggcgggcagtggaggggaggtggttggcgcggaggagagag |
26955914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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