View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11296_high_2 (Length: 633)
Name: NF11296_high_2
Description: NF11296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11296_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 25520453 - 25520388
Alignment:
| Q |
6 |
agcagcacagacagagattgaagtggaacagctcaattatttcatcatggtaaatatattgagatt |
71 |
Q |
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| T |
25520453 |
agcatcactgacagagattgaagtggaacagctcaattatttcatcatggtaaatatattgagatt |
25520388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 501 - 616
Target Start/End: Complemental strand, 25520059 - 25519927
Alignment:
| Q |
501 |
aatatgactattttcacatatcaattttaggtgtatacgatatgaaggaatggtggacacggttg-----------------gagcgtcatatcatagtg |
583 |
Q |
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| T |
25520059 |
aatatgattattttcacatatcaattttaggtgtacccgatatgaaggaatggtggacacggttggaccagtgtcttgtgttgagcgtcatatcatagtg |
25519960 |
T |
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| Q |
584 |
gggacaaatgatgaaatgttattcataagaaaa |
616 |
Q |
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| T |
25519959 |
gagacaaaggatgaaatgttattcataagaaaa |
25519927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 42141666 - 42141783
Alignment:
| Q |
76 |
aatagttgttatgattacatatatgaataaggtatgttggcctcatt--cttgaattttttgtggtatgtaatgtctagacaaaataggaagaaaataat |
173 |
Q |
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| T |
42141666 |
aatagttgttatgattgcacatatgaataaggtaggttggtgtcattttctcaaagtttttgtgttatgta-tgtctagacaaaataggaataaaataat |
42141764 |
T |
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| Q |
174 |
tggagaagagaaaatctat |
192 |
Q |
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| T |
42141765 |
tggagaagagaaaaactat |
42141783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 42133397 - 42133433
Alignment:
| Q |
31 |
gaacagctcaattatttcatcatggtaaatatattga |
67 |
Q |
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| T |
42133397 |
gaacagctcaattatttcatcatggttagtatattga |
42133433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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