View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11296_high_3 (Length: 522)

Name: NF11296_high_3
Description: NF11296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11296_high_3
NF11296_high_3
[»] chr3 (11 HSPs)
chr3 (1-503)||(50814234-50814736)
chr3 (1-503)||(50861128-50861630)
chr3 (171-443)||(39558691-39558966)
chr3 (176-415)||(39558983-39559225)
chr3 (176-376)||(50814634-50814834)
chr3 (176-376)||(50861030-50861230)
chr3 (1-107)||(39558757-39558863)
chr3 (237-328)||(49857495-49857589)
chr3 (257-365)||(49973779-49973887)
chr3 (3-101)||(39559024-39559125)
chr3 (237-328)||(49760645-49760736)
[»] chr7 (1 HSPs)
chr7 (242-359)||(19370917-19371034)
[»] chr4 (1 HSPs)
chr4 (307-353)||(31210981-31211027)
[»] scaffold0543 (1 HSPs)
scaffold0543 (241-289)||(3504-3552)
[»] scaffold0492 (1 HSPs)
scaffold0492 (241-289)||(5050-5098)


Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 50814736 - 50814234
Alignment:
Q  1 caagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagttgggtcagggttttggtagttaggatgaaagaaggcagtatggtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50814736 caagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagttgggtcagggttttggtagttaggatgaaagaaggcagtatggtt 50814637  T
Q  101 tcggagtaacggcactttataaactctcctctatctctaccaatcaccttaaagaaagtcgtagttattgaatcatttgcttccaacttctctagaatgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50814636 tcggagtaacggcactttataaactctcctctatctctaccaatcaccttaaagaaagtcgtagttattgaatcatttgcttccaacttctctagaatgg 50814537  T
Q  201 gacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggacttttagtgagggaagatcaacgaaaggtacttc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50814536 gacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggacttttagtgagggaagatcaacgaaaggaacttc 50814437  T
Q  301 gttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttcgttaagatggcagagatttatgctt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  50814436 gttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaagaaggcagtgtggtttcgttaagatggcagagatttatgctt 50814337  T
Q  401 aggttttcaactcctgaagtaattgcagcataaaccaaattgttgaaatcgttcttgtctatgaagctatagcgaaaattaagctggaacgagaggatgg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50814336 aggttttcaactcctgaagtaattgcagcataaaccaaattgttgaaatcgttcttgtctatgaagctatagcgacaattaagctggaacgagaggatgg 50814237  T
Q  501 gta 503  Q
    |||    
T  50814236 gta 50814234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 50861128 - 50861630
Alignment:
Q  1 caagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagttgggtcagggttttggtagttaggatgaaagaaggcagtatggtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50861128 caagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagttgggtcagggttttggtagttaggatgaaagaaggcagtatggtt 50861227  T
Q  101 tcggagtaacggcactttataaactctcctctatctctaccaatcaccttaaagaaagtcgtagttattgaatcatttgcttccaacttctctagaatgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50861228 tcggagtaacggcactttataaactctcctctatctctaccaatcaccttaaagaaagtcgtagttattgaatcatttgcttccaacttctctagaatgg 50861327  T
Q  201 gacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggacttttagtgagggaagatcaacgaaaggtacttc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50861328 gacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggacttttagtgagggaagatcaacgaaaggaacttc 50861427  T
Q  301 gttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttcgttaagatggcagagatttatgctt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  50861428 gttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaagaaggcagtgtggtttcgttaagatggcagagatttatgctt 50861527  T
Q  401 aggttttcaactcctgaagtaattgcagcataaaccaaattgttgaaatcgttcttgtctatgaagctatagcgaaaattaagctggaacgagaggatgg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50861528 aggttttcaactcctgaagtaattgcagcataaaccaaattgttgaaatcgttcttgtctatgaagctatagcgacaattaagctggaacgagaggatgg 50861627  T
Q  501 gta 503  Q
    |||    
T  50861628 gta 50861630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 171 - 443
Target Start/End: Complemental strand, 39558966 - 39558691
Alignment:
Q  171 aatcatttgcttccaacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggacttt 270  Q
    |||| ||||||||||||| ||||||||||||||| |  |||||||||||||| | |||||||  |  || ||||  ||||||||||||||||||||||||    
T  39558966 aatcctttgcttccaactcctctagaatgggacagccggatagaagtttcatgatgtactcataatgtgggaaaccgacagattctaagtgaaggacttt 39558867  T
Q  271 tagtgagggaagatcaacgaaaggtacttcgttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtg 370  Q
    |||  ||||||||| ||||||||| ||||||||||||||||| |||||||||||||||  ||||||||||||| |||||||||  |||| ||||||| ||    
T  39558866 tagcaagggaagattaacgaaaggaacttcgttcaatgttacactcttcaatttgaggactgtcaaggttttggtagttagaaccaaagcaggcagtatg 39558767  T
Q  371 gtttc---gttaagatggcagagatttatgcttaggttttcaactcctgaagtaattgcagcataaaccaaattgt 443  Q
     | ||   ||||   | ||||||||| |||||||||||||||||||||    ||||||||||||| ||||||||||    
T  39558766 atatcggagttatacttgcagagattgatgcttaggttttcaactcctcctataattgcagcatataccaaattgt 39558691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 176 - 415
Target Start/End: Complemental strand, 39559225 - 39558983
Alignment:
Q  176 tttgcttccaacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggacttttagtg 275  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||||  |  || |||| | ||||| || ||||||||| ||||||||| |||||||| |    
T  39559225 tttgcttccaactcctctagaatgggacaaacagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcg 39559126  T
Q  276 agggaagatcaacgaaaggtacttcgt---tcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggt 372  Q
    |||||||||| |||||||| ||||| |   ||||||||||||||||||||||||||   |||||||||||| |||||||||  |||| ||||| ||||||    
T  39559125 agggaagatcgacgaaaggaacttcttcattcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggt 39559026  T
Q  373 ttcgttaagatggcagagatttatgcttaggttttcaactcct 415  Q
    || |     |||||||||||  |||||||||||||||||||||    
T  39559025 tttggatttatggcagagatcgatgcttaggttttcaactcct 39558983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 176 - 376
Target Start/End: Complemental strand, 50814834 - 50814634
Alignment:
Q  176 tttgcttccaacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggacttttagtg 275  Q
    ||||||||||||| |||||||| |||||||| |||||||||| || | | ||||  |  | |||||||| ||||||||||||||||||||||||||||      
T  50814834 tttgcttccaactcctctagaacgggacaaccagatagaagtgtcgtgatgtaccaataatatgtgaaactgacagattctaagtgaaggacttttagca 50814735  T
Q  276 agggaagatcaacgaaaggtacttcgttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttc 375  Q
    ||||||||||||||||||| |||| ||||||||||| |||||||||||||||    |||| ||||||| ||||||| ||||||| ||||||| |||||||    
T  50814734 agggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagttgggtcagggttttggtagttaggatgaaagaaggcagtatggtttc 50814635  T
Q  376 g 376  Q
    |    
T  50814634 g 50814634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 176 - 376
Target Start/End: Original strand, 50861030 - 50861230
Alignment:
Q  176 tttgcttccaacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggacttttagtg 275  Q
    ||||||||||||| |||||||| |||||||| |||||||||| || | | ||||  |  | |||||||| ||||||||||||||||||||||||||||      
T  50861030 tttgcttccaactcctctagaacgggacaaccagatagaagtgtcgtgatgtaccaataatatgtgaaactgacagattctaagtgaaggacttttagca 50861129  T
Q  276 agggaagatcaacgaaaggtacttcgttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttc 375  Q
    ||||||||||||||||||| |||| ||||||||||| |||||||||||||||    |||| ||||||| ||||||| ||||||| ||||||| |||||||    
T  50861130 agggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagttgggtcagggttttggtagttaggatgaaagaaggcagtatggtttc 50861229  T
Q  376 g 376  Q
    |    
T  50861230 g 50861230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 39558863 - 39558757
Alignment:
Q  1 caagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagttgggtcagggttttggtagttaggatgaaagaaggcagtatggtt 100  Q
    ||||||||||| |||||||||||||| |||||||||||  ||||||||||||||    |||| ||||||||||||||| |  |||| |||||||||| |     
T  39558863 caagggaagattaacgaaaggaacttcgttcaatgttacactcttcaatttgaggactgtcaaggttttggtagttagaaccaaagcaggcagtatgata 39558764  T
Q  101 tcggagt 107  Q
    |||||||    
T  39558763 tcggagt 39558757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 328
Target Start/End: Original strand, 49857495 - 49857589
Alignment:
Q  237 atgtgaaagtgacagattctaagtgaaggacttttagtgagggaagatcaacgaaaggtacttc---gttcaatgttaccctcttcaatttgagg 328  Q
    ||||||||  ||| ||||| |||||||||| ||| || || ||||||||||| |||||  ||||   ||||||||||| ||||||||||||||||    
T  49857495 atgtgaaacagacggattccaagtgaaggattttgagcgacggaagatcaaccaaaggaccttcatagttcaatgttatcctcttcaatttgagg 49857589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 365
Target Start/End: Original strand, 49973779 - 49973887
Alignment:
Q  257 aagtgaaggacttttagtgagggaagatcaacgaaaggtacttcgttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatga 356  Q
    |||||||||||||| ||||||||||||| || | | || | ||| |||||||| | ||| ||||||||||||  || |||||||||  || | |||||||    
T  49973779 aagtgaaggactttgagtgagggaagataaaagtatgggatttcattcaatgtgatcctattcaatttgaggactgacaaggttttagtactaagaatga 49973878  T
Q  357 aaggaggca 365  Q
    ||| |||||    
T  49973879 aagaaggca 49973887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 39559125 - 39559024
Alignment:
Q  3 agggaagatcaacgaaaggaacttggt---tcaatgttatcctcttcaatttgagttgggtcagggttttggtagttaggatgaaagaaggcagtatggt 99  Q
    |||||||||| |||||||||||||  |   ||||||||| |||||||||||||||   ||||| ||||||| ||||||| |  |||||||||| | ||||    
T  39559125 agggaagatcgacgaaaggaacttcttcattcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggt 39559026  T
Q  100 tt 101  Q
    ||    
T  39559025 tt 39559024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 328
Target Start/End: Original strand, 49760645 - 49760736
Alignment:
Q  237 atgtgaaagtgacagattctaagtgaaggacttttagtgagggaagatcaacgaaaggtacttcgttcaatgttaccctcttcaatttgagg 328  Q
    ||||| ||||||||  ||| ||||||||| |||| || || |||||||||||| | || ||| |  ||||||||| ||||||||||||||||    
T  49760645 atgtgtaagtgacaagttccaagtgaagggctttgagcgaaggaagatcaacgtacggaactccagtcaatgttatcctcttcaatttgagg 49760736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 359
Target Start/End: Original strand, 19370917 - 19371034
Alignment:
Q  242 aaagtgacagattctaagtgaaggacttttagtgagggaagatcaacgaaaggtacttcgttcaatgttaccctcttcaatttgagggatgtcaaggttt 341  Q
    ||||||| |||||| | |||||| ||||| || |||||||||||||||   |  |||| ||| | ||||| |||||||||||||||| ||| ||||||||    
T  19370917 aaagtgatagattccatgtgaagtactttgagcgagggaagatcaacgtttgaaacttggttgattgttatcctcttcaatttgaggaatgccaaggttt 19371016  T
Q  342 tgctagttagaatgaaag 359  Q
    ||  |||||||| |||||    
T  19371017 tggaagttagaaggaaag 19371034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 31211027 - 31210981
Alignment:
Q  307 tgttaccctcttcaatttgagggatgtcaaggttttgctagttagaa 353  Q
    |||||| ||||||||||||||| |||||||||||||| || ||||||    
T  31211027 tgttacgctcttcaatttgaggaatgtcaaggttttggtatttagaa 31210981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 3504 - 3552
Alignment:
Q  241 gaaagtgacagattctaagtgaaggacttttagtgagggaagatcaacg 289  Q
    ||||||||||  |||||||||||| ||||||||||| ||||||| ||||    
T  3504 gaaagtgacatgttctaagtgaagaacttttagtgacggaagatgaacg 3552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 5050 - 5098
Alignment:
Q  241 gaaagtgacagattctaagtgaaggacttttagtgagggaagatcaacg 289  Q
    ||||||||||  |||||||||||| ||||||||||| ||||||| ||||    
T  5050 gaaagtgacatgttctaagtgaagaacttttagtgacggaagatgaacg 5098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University