View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11296_high_4 (Length: 367)
Name: NF11296_high_4
Description: NF11296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11296_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 15 - 352
Target Start/End: Complemental strand, 37616219 - 37615890
Alignment:
| Q |
15 |
agcacagattcgtttgctcgaggagaaagcatgtagggtgttcaacaagagaagtcgtagttagaggatgcttgctcaaaatgtaaggagaagagaactg |
114 |
Q |
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| T |
37616219 |
agcacagaatcgtttgcacaaggagaaagcacgtagggt--tcaacaagagaagccatagttagaggatgcttgctcaaaatgtaaggagaagataactg |
37616122 |
T |
|
| Q |
115 |
aaattgtggaagaagctaaaaatgtggcctctatgaccatacaaacccgcgagaagattgataatgtaaaaaagaagaagcgggagttggattcaaatta |
214 |
Q |
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| T |
37616121 |
aaattgtggaagaagctaaaaatgtagcctctattaccatacaaacccgcgagaagattgataatgtaaaaaa---gaagcgggagttgaattcaaatta |
37616025 |
T |
|
| Q |
215 |
tgatacacttgaaggagattatgccaaaatgaaattgtcacctccattataaaacttaatatgttatttaatgttttcaggtgaattggtgctgatggtt |
314 |
Q |
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| T |
37616024 |
tgatacacttgaaggaaattatgccata--taaactctcacctgcataatgaaactt-atatgttatttaatgttttcaggtgaattggtgctgatggtt |
37615928 |
T |
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| Q |
315 |
acgtattttacaatagatatacttataagaaaccaact |
352 |
Q |
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| T |
37615927 |
acatattttgcaatagatacacttattagaaaccaact |
37615890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 262
Target Start/End: Complemental strand, 6173541 - 6173296
Alignment:
| Q |
15 |
agcacagattcgtttgctcgaggagaaagcatgtagggtgttcaacaagagaagtcgtagttagaggatgcttgctcaaaatgtaaggagaagagaactg |
114 |
Q |
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| T |
6173541 |
agcacagattcgtttgctcgaggagaaagcacgtaaggt--tcaacaagagaagtcacagttagaggatgcttgctcaaaatgtaaggagaagagaactg |
6173444 |
T |
|
| Q |
115 |
aaattgtggaagaagctaaaaatgtggcctctatgaccatacaaacccgcgagaagattgataatgtaaaaaagaagaagcgggagttggattcaaatta |
214 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
6173443 |
aaattgtggaagaagctaaaaatgtagcctctacgaccatacaaacccgtgagaagattgataatctaaaaaagaagaagcgggagttggattcgaatta |
6173344 |
T |
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| Q |
215 |
tgatacacttgaaggagattatgccaaaatgaaattgtcacctccatt |
262 |
Q |
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||| || ||||||||| ||||||||| ||||| | ||||||||||||| |
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| T |
6173343 |
tgagacgcttgaaggaaattatgccataatgagactgtcacctccatt |
6173296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 15 - 262
Target Start/End: Complemental strand, 6135486 - 6135241
Alignment:
| Q |
15 |
agcacagattcgtttgctcgaggagaaagcatgtagggtgttcaacaagagaagtcgtagttagaggatgcttgctcaaaatgtaaggagaagagaactg |
114 |
Q |
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||||||||||||||||||||||||||||||| ||| ||| || ||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6135486 |
agcacagattcgtttgctcgaggagaaagcacgtaaggtttt--acaggagaagtcacagttagaggatgcttgctcaaaatgtaaggagaagagatctg |
6135389 |
T |
|
| Q |
115 |
aaattgtggaagaagctaaaaatgtggcctctatgaccatacaaacccgcgagaagattgataatgtaaaaaagaagaagcgggagttggattcaaatta |
214 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
6135388 |
aaattttggaagaagctaaaaatgtagcctctatgaccatacaaacccgcgagaagattgataatgtaaacaagaagaagcggaagttggattcaaatta |
6135289 |
T |
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| Q |
215 |
tgatacacttgaaggagattatgccaaaatgaaattgtcacctccatt |
262 |
Q |
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|||||| ||||||||| || |||||| ||||| | || |||||||||| |
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| T |
6135288 |
tgatacgcttgaaggaaatcatgccataatgagactggcacctccatt |
6135241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 6126917 - 6126812
Alignment:
| Q |
15 |
agcacagattcgtttgctcgaggagaaagcatgtagggtgttcaacaagagaagtcgtagttagaggatgcttgctcaaaatgtaaggagaagagaactg |
114 |
Q |
| |
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|||||| |||| |||||||||||| | || | ||| | |||||||||||||||||| ||||||| |||| ||||| |||||||| ||||||| || || |
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| T |
6126917 |
agcacaaattcttttgctcgaggaaagagtacgtaag--gttcaacaagagaagtcgcagttagaagatggctgctccaaatgtaaagagaagaaaagtg |
6126820 |
T |
|
| Q |
115 |
aaattgtg |
122 |
Q |
| |
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||||||| |
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| T |
6126819 |
gaattgtg |
6126812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 24 - 350
Target Start/End: Original strand, 22083269 - 22083569
Alignment:
| Q |
24 |
tcgtttgctcgaggagaaagcatgtagggtgttcaacaagagaagtcgtagttagaggatgcttgctcaaaatgtaaggagaagagaactgaaattgtgg |
123 |
Q |
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|||||||| ||||||||||||| ||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22083269 |
tcgtttgcacgaggagaaagcacgtagggt--tcaacaagagaagccatagttagaggatgcttgctcaaaatgtaaggagaagataactgaaattgtgg |
22083366 |
T |
|
| Q |
124 |
aagaagctaaaaatgtggcctctatgaccatacaaacccgcgagaagattgataatgtaaaaaagaagaagcgggagttggattcaaattatgatacact |
223 |
Q |
| |
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|||||||||||||||| |||||||| ||||||||||||||||| | |||||||||||||| ||||||||||||||||||| |
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| T |
22083367 |
aagaagctaaaaatgtagcctctattaccatacaaacccgcgaca---------------------agaagcgggagttgaattcaaattatgatacact |
22083445 |
T |
|
| Q |
224 |
tgaaggagattatgccaaaatgaaattgtcacctccattataaaacttaatatgttatttaatgttttcaggtgaattggtgctgatggttacgtatttt |
323 |
Q |
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| T |
22083446 |
tgaaggaaattatgccata--taaactctcacctccataatgaaactt-atatgttatttaacgttttcaggtgaattggagctgatggttacatatttt |
22083542 |
T |
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| Q |
324 |
acaatagatatacttataagaaaccaa |
350 |
Q |
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||||||||| |||||||||||||||| |
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| T |
22083543 |
gcaatagatacacttataagaaaccaa |
22083569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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