View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11298_high_10 (Length: 254)
Name: NF11298_high_10
Description: NF11298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11298_high_10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 26436664 - 26436424
Alignment:
| Q |
14 |
cagagatgagagatagcaactttttaacaagatccccaaatctaagaacttgtaaacttaatactaacagctttggtgccctcggaatcaacatgtttag |
113 |
Q |
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| T |
26436664 |
cagagatgagagatagcaactttttaacaagatccccaaatctaagaacttgtaaacttaatactaacagctttcgtgccctcggaatcaacatgtttcg |
26436565 |
T |
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| Q |
114 |
ccaattctcccagaagaacaagcctaaaatgtgtacagatctcttctaccacattcctacactagagttgggaattaggaattcaaaacagatggtacaa |
213 |
Q |
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| T |
26436564 |
ccaattctcccggaagaacaagcctaaaatgtgtacagatctcttctaccacattcctacactagagttgggaattaggaattcaaaacagatggtacaa |
26436465 |
T |
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| Q |
214 |
cacctaacagtgtatcgtgcccacgtcccttcatatcgaaa |
254 |
Q |
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| T |
26436464 |
cacctaacagtgcatcgtgcccacgtcccttcatatcgaaa |
26436424 |
T |
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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 34662044 - 34662128
Alignment:
| Q |
53 |
atctaagaacttgtaaacttaatactaacagctttggtgccctcggaatcaacatgtttagccaattctcccagaagaacaagcctaa |
140 |
Q |
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| T |
34662044 |
atctaagaacttgtaaacttcgtt---acagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaa |
34662128 |
T |
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