View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11298_high_2 (Length: 434)
Name: NF11298_high_2
Description: NF11298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11298_high_2 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 34262543 - 34262130
Alignment:
| Q |
18 |
ttaaaaagaagtgcatgttcagtgtaggttagatgaagttagtatcttgtcttgataaagaacataaagtagcattggaaagtggaacatggagagctaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34262543 |
ttaaaaagaagtgcatgttcagtgtaggttagatgaagttagtatcttgtcttgataaagaacataaagtagcattggaaagtggaacatggagagctaa |
34262444 |
T |
|
| Q |
118 |
cagtaacagtactgctagtactggaaagtggacaatttgcccacacactgcagaacccgaccgcagtcatggtcacaacttttcttnnnnnnnnnnnnnt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
34262443 |
cagtaacagtactgctagtactggaaagtggacaatttgcccacacactgcagaacccgaccgcagtcatagtcacaacttttcttccccccccccccat |
34262344 |
T |
|
| Q |
218 |
caactaaattaaccgtaacatctcccagccaaaatgacagaaaacccctcatttgttataaaagactcatcatctgaactcaaatgattaatgaatttcg |
317 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| ||||| |
|
|
| T |
34262343 |
caactaaattaaccgtcacatctcccagccaaaatgacagaaaacccctcatttgttataaaaga---ttcatctgaattcaaatggttaatgagtttcg |
34262247 |
T |
|
| Q |
318 |
taaagacaaatcatttnnnnnnnnccctgagcttaatttcgagtaaataaactttatataccattcaactgaatttcatattacacatagagaccagcca |
417 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34262246 |
taaagacaaatcatttaaaaaaaaccctgagcttaatttcgagtaaataaactttatttaccattcaactgaatctcatattacacatagagaccagcca |
34262147 |
T |
|
| Q |
418 |
agacaagacaaacgctt |
434 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34262146 |
agacaagacaaacgctt |
34262130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University