View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11298_high_3 (Length: 413)

Name: NF11298_high_3
Description: NF11298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11298_high_3
NF11298_high_3
[»] chr1 (15 HSPs)
chr1 (107-412)||(36633347-36633652)
chr1 (18-107)||(36632941-36633030)
chr1 (161-316)||(36637813-36637965)
chr1 (18-80)||(51043032-51043094)
chr1 (29-78)||(7015943-7015992)
chr1 (26-79)||(36632876-36632929)
chr1 (29-80)||(28033941-28033992)
chr1 (23-80)||(41463907-41463964)
chr1 (18-80)||(17063247-17063309)
chr1 (26-81)||(9026244-9026298)
chr1 (28-71)||(34502901-34502944)
chr1 (23-77)||(13362733-13362787)
chr1 (23-81)||(16299863-16299921)
chr1 (35-80)||(10556292-10556337)
chr1 (23-67)||(17064083-17064127)
[»] chr7 (3 HSPs)
chr7 (221-321)||(46939438-46939538)
chr7 (26-71)||(21142363-21142408)
chr7 (274-305)||(46938346-46938377)
[»] chr2 (6 HSPs)
chr2 (27-81)||(18318336-18318390)
chr2 (23-72)||(43305273-43305322)
chr2 (23-71)||(38623658-38623706)
chr2 (25-65)||(8441409-8441450)
chr2 (27-63)||(36613315-36613351)
chr2 (27-63)||(36621166-36621202)
[»] chr8 (5 HSPs)
chr8 (28-81)||(44251284-44251337)
chr8 (26-74)||(3813259-3813307)
chr8 (23-81)||(3234686-3234744)
chr8 (28-66)||(13068283-13068321)
chr8 (26-66)||(42939285-42939325)
[»] chr6 (3 HSPs)
chr6 (27-71)||(5583605-5583649)
chr6 (26-83)||(31636903-31636960)
chr6 (27-64)||(3435789-3435826)
[»] chr3 (5 HSPs)
chr3 (28-80)||(23308596-23308648)
chr3 (27-66)||(22926427-22926466)
chr3 (18-80)||(18365804-18365866)
chr3 (23-79)||(4549524-4549580)
chr3 (27-71)||(46799049-46799093)
[»] chr5 (4 HSPs)
chr5 (26-81)||(1422660-1422715)
chr5 (26-71)||(20869355-20869400)
chr5 (26-80)||(19264713-19264767)
chr5 (26-79)||(42078958-42079010)
[»] chr4 (7 HSPs)
chr4 (27-80)||(20281434-20281487)
chr4 (23-71)||(44341999-44342047)
chr4 (27-66)||(21622703-21622742)
chr4 (18-60)||(54512269-54512311)
chr4 (23-80)||(40184339-40184396)
chr4 (23-68)||(51875605-51875649)
chr4 (27-63)||(3525346-3525382)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 107 - 412
Target Start/End: Original strand, 36633347 - 36633652
Alignment:
Q  107 tatatgatatgatacgtattacactaacactactatttggctatcttgctcttgcacataacaagtgaaagttaagtggcatggcttctactaagtactt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36633347 tatatgatatgatacgtattacactaacactactatttggctatcttgctcttgcacataacaagtgaaagttaagtggcatggcttctactaagtacgt 36633446  T
Q  207 tgttgctttacaagttgtgttattttgcatatgtttggttgtggcaaattctgttcacttcagttacccagcagttttcaactttggtgattcaaattca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36633447 tgttgctttacaagttgtgttattttgcatatgtttggttgtggcaaattctgttcacttcagttacccagcagttttcaactttggtgattcaaattca 36633546  T
Q  307 gacacaggtgaactttgtgcagccaagggctttcaacccgccccacccaacggacaaaattacttcaaagctccagctgggagattctgtgatgtccatc 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| || ||    
T  36633547 gacacaggtgaactttgtgcagccaagggctttcaacccgccccacccaacggacaaaattacttcaaagctccagccgggagattcagcgatggccgtc 36633646  T
Q  407 tcattg 412  Q
    ||||||    
T  36633647 tcattg 36633652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 36632941 - 36633030
Alignment:
Q  18 ctaataagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttggttagcattacccttattgttattact 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36632941 ctaataagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttggttagcattactcttattgttattact 36633030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 161 - 316
Target Start/End: Original strand, 36637813 - 36637965
Alignment:
Q  161 cacataacaagtgaaagttaagtggcatggcttctactaagtactttgttgctttacaagttgtgttattttgcatatgtttggttgtggcaaattctgt 260  Q
    ||||||||||||||||||| |||| ||||| |||||   ||||| |||||||||| || | ||| || |||||||| | ||||| ||| |||||||||||    
T  36637813 cacataacaagtgaaagttcagtgacatgggttcta---agtacgttgttgctttgcatgctgtattcttttgcatgtctttggctgtagcaaattctgt 36637909  T
Q  261 tcacttcagttacccagcagttttcaactttggtgattcaaattcagacacaggtg 316  Q
    | |||||||||| ||||||| ||||||||||||||||||||  ||||| |||||||    
T  36637910 tgacttcagttatccagcagctttcaactttggtgattcaacctcagatacaggtg 36637965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 51043032 - 51043094
Alignment:
Q  18 ctaataagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 80  Q
    |||| |||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||    
T  51043032 ctaaaaagggtaatatttatattcaaagttgtgtaatcaatgcattaaatacttcctcttttg 51043094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 7015992 - 7015943
Alignment:
Q  29 aatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttt 78  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7015992 aatatttgcattcaaaattgtgtaatcaatgcattaaatgcttcctcttt 7015943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 36632929 - 36632876
Alignment:
Q  26 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctctttt 79  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  36632929 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgattcatctttt 36632876  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 28033941 - 28033992
Alignment:
Q  29 aatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 80  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  28033941 aatatttgcatttaaagttgtgtaatcaatgtattaaatgcttcctcttttg 28033992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 41463964 - 41463907
Alignment:
Q  23 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 80  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||  |||||||    
T  41463964 aaggataatatttgcattcaaagttatgtaatcaatgcattaaatgctttatcttttg 41463907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 17063247 - 17063309
Alignment:
Q  18 ctaataagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 80  Q
    |||||||| ||||||||| ||||| |||||||  ||||||||||||||||||||| |||||||    
T  17063247 ctaataagagtaatatttacattcgaagttgtagaatcaatgcattaaatgcttcatcttttg 17063309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 9026298 - 9026244
Alignment:
Q  26 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttgg 81  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||| ||||||||    
T  9026298 ggtaatatttacatttaaa-ttgtgtaatcaatgcattaaatgcttcatcttttgg 9026244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 34502944 - 34502901
Alignment:
Q  28 taatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 71  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||    
T  34502944 taatatttgcattgaaagttgtgtaatcaatgcattaaaagctt 34502901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 13362787 - 13362733
Alignment:
Q  23 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctctt 77  Q
    |||| |||||||| |||||||||||||||||| ||||||||| | ||||||||||    
T  13362787 aaggataatatttacattcaaagttgtgtaattaatgcattacacgcttcctctt 13362733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 16299921 - 16299863
Alignment:
Q  23 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttgg 81  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||| ||| || ||||||    
T  16299921 aagggtaatatctgcattcaaaattgtgtaatcaatgaattaaatactttcttttttgg 16299863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 10556337 - 10556292
Alignment:
Q  35 tgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 80  Q
    ||||||||||||| || || |||| |||||||||||||||||||||    
T  10556337 tgcattcaaagttatgcaaccaatacattaaatgcttcctcttttg 10556292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 17064127 - 17064083
Alignment:
Q  23 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaat 67  Q
    |||| ||||||||||||| ||||||  ||||||||||||||||||    
T  17064127 aaggataatatttgcatttaaagtttagtaatcaatgcattaaat 17064083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 221 - 321
Target Start/End: Complemental strand, 46939538 - 46939438
Alignment:
Q  221 ttgtgttattttgcatatgtttggttgtggcaaattctgttcacttcagttacccagcagttttcaactttggtgattcaaattcagacacaggtgaact 320  Q
    ||||||||||||||| ||||||||  ||||||||||| ||| | |||| ||  ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  46939538 ttgtgttattttgcacatgtttggcagtggcaaattcagttgagttcaattttccagcagttttcaacttaggtgattcaaattcggacacaggtgaact 46939439  T
Q  321 t 321  Q
    |    
T  46939438 t 46939438  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 21142363 - 21142408
Alignment:
Q  26 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 71  Q
    |||||||||| |||||||||| |||| |||||||||||||||||||    
T  21142363 ggtaatatttacattcaaagtagtgtgatcaatgcattaaatgctt 21142408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 305
Target Start/End: Complemental strand, 46938377 - 46938346
Alignment:
Q  274 ccagcagttttcaactttggtgattcaaattc 305  Q
    ||||||||||||||||||||||||||||||||    
T  46938377 ccagcagttttcaactttggtgattcaaattc 46938346  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 18318390 - 18318336
Alignment:
Q  27 gtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttgg 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  18318390 gtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctttatcttttgg 18318336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 43305273 - 43305322
Alignment:
Q  23 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttc 72  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| ||||    
T  43305273 aaggataatatttgcatttaaagttgtgtaatcaatgcattaaatacttc 43305322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 38623658 - 38623706
Alignment:
Q  23 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 71  Q
    |||| ||||||||||||| |||||||||||||||||| |||||||||||    
T  38623658 aaggataatatttgcatttaaagttgtgtaatcaatgaattaaatgctt 38623706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 8441409 - 8441450
Alignment:
Q  25 gggtaatatttgcattc-aaagttgtgtaatcaatgcattaa 65  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
T  8441409 gggtaatatttgcattcaaaagttgtgtaatcaatacattaa 8441450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 36613315 - 36613351
Alignment:
Q  27 gtaatatttgcattcaaagttgtgtaatcaatgcatt 63  Q
    |||||||||||||  ||||||||||||||||||||||    
T  36613315 gtaatatttgcatggaaagttgtgtaatcaatgcatt 36613351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 36621166 - 36621202
Alignment:
Q  27 gtaatatttgcattcaaagttgtgtaatcaatgcatt 63  Q
    |||||||||||||  ||||||||||||||||||||||    
T  36621166 gtaatatttgcatggaaagttgtgtaatcaatgcatt 36621202  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 44251284 - 44251337
Alignment:
Q  28 taatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttgg 81  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  44251284 taatatttgtattcaaagttgtgtaatcaatgcattaaatgtttcctcttttgg 44251337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 3813259 - 3813307
Alignment:
Q  26 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcct 74  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||    
T  3813259 ggtaatatttgcattcaaagttgtgtaatcaatgtaataaatgcttcct 3813307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 3234744 - 3234686
Alignment:
Q  23 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttgg 81  Q
    |||||||||||||||||||||| |||||||||||||| |||||| ||||| || |||||    
T  3234744 aagggtaatatttgcattcaaaattgtgtaatcaatgaattaaaggcttcttcatttgg 3234686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 13068321 - 13068283
Alignment:
Q  28 taatatttgcattcaaagttgtgtaatcaatgcattaaa 66  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  13068321 taatatttgcattgaaagttgtgtaatcaatgtattaaa 13068283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 42939285 - 42939325
Alignment:
Q  26 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaa 66  Q
    |||| |||||||||| ||||||||||| |||||||||||||    
T  42939285 ggtagtatttgcattaaaagttgtgtagtcaatgcattaaa 42939325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 5583605 - 5583649
Alignment:
Q  27 gtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 71  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  5583605 gtaatatttgcaatcaaagttgtgtaatcaatgcattaaatgctt 5583649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 31636960 - 31636903
Alignment:
Q  26 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttggtt 83  Q
    ||||||||||||||| ||||||||||||| ||| |||||||| |||  ||||||||||    
T  31636960 ggtaatatttgcatttaaagttgtgtaattaatacattaaatactttttcttttggtt 31636903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 3435826 - 3435789
Alignment:
Q  27 gtaatatttgcattcaaagttgtgtaatcaatgcatta 64  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  3435826 gtaatatttgcattgaaagttatgtaatcaatgcatta 3435789  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 23308596 - 23308648
Alignment:
Q  28 taatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 80  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||||||||||    
T  23308596 taatatttacattcaaaattgtgtaatcaatgcattaaatacttcctcttttg 23308648  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 22926466 - 22926427
Alignment:
Q  27 gtaatatttgcattcaaagttgtgtaatcaatgcattaaa 66  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  22926466 gtaatatttgcattgaaagttgtgtaatcaatgcattaaa 22926427  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 18365866 - 18365804
Alignment:
Q  18 ctaataagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 80  Q
    |||| ||||||||||||| | ||||||||| |||||| ||||||||||| |||| ||||||||    
T  18365866 ctaaaaagggtaatatttaccttcaaagttatgtaataaatgcattaaaagctttctcttttg 18365804  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 4549580 - 4549524
Alignment:
Q  23 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctctttt 79  Q
    |||| |||||||||||||||||||||||| || |||||||| ||| ||| |||||||    
T  4549580 aaggttaatatttgcattcaaagttgtgttattaatgcattgaatactttctctttt 4549524  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 46799093 - 46799049
Alignment:
Q  27 gtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 71  Q
    ||||| |||||||| |||| |||||||||||||||||||| ||||    
T  46799093 gtaatttttgcattaaaagatgtgtaatcaatgcattaaaagctt 46799049  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 1422660 - 1422715
Alignment:
Q  26 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttgg 81  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||| |||||||||    
T  1422660 ggtaatatttgcattcaaagttggataatcaatgcattgaatgcttactcttttgg 1422715  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 20869355 - 20869400
Alignment:
Q  26 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 71  Q
    |||| |||||||||| ||||||||||||||||||||||||| ||||    
T  20869355 ggtagtatttgcattgaaagttgtgtaatcaatgcattaaaagctt 20869400  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 19264767 - 19264713
Alignment:
Q  26 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 80  Q
    |||||| ||||||||||||||||  |||||||||||||||||  || ||||||||    
T  19264767 ggtaatgtttgcattcaaagttggataatcaatgcattaaatattttctcttttg 19264713  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 42079010 - 42078958
Alignment:
Q  26 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctctttt 79  Q
    |||||||| |||||||||| || |||||| |||||||||||||||| |||||||    
T  42079010 ggtaatatatgcattcaaa-ttatgtaataaatgcattaaatgctttctctttt 42078958  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 20281487 - 20281434
Alignment:
Q  27 gtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 80  Q
    |||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||    
T  20281487 gtaatatttgcatttaaaattgtgtaatcaatgcattaaatgtttcatcttttg 20281434  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 44341999 - 44342047
Alignment:
Q  23 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 71  Q
    ||||||||||||| |||||||||||||| | ||||| ||||||||||||    
T  44341999 aagggtaatatttacattcaaagttgtgcattcaatacattaaatgctt 44342047  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 21622742 - 21622703
Alignment:
Q  27 gtaatatttgcattcaaagttgtgtaatcaatgcattaaa 66  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  21622742 gtaatatttacattgaaagttgtgtaatcaatgcattaaa 21622703  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 54512311 - 54512269
Alignment:
Q  18 ctaataagggtaatatttgcattcaaagttgtgtaatcaatgc 60  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||    
T  54512311 ctaaaaagggtaatgtttacattcaaagttgtgtaatcaatgc 54512269  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 40184396 - 40184339
Alignment:
Q  23 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 80  Q
    |||| |||||| || ||||||||||||||||||| ||||||||||  ||| |||||||    
T  40184396 aaggataatatatgtattcaaagttgtgtaatcattgcattaaatatttcttcttttg 40184339  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 51875649 - 51875605
Alignment:
Q  23 aagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatg 68  Q
    |||| |||||||||||||||| |||||||||||||| |||||||||    
T  51875649 aaggataatatttgcattcaa-gttgtgtaatcaatacattaaatg 51875605  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 3525346 - 3525382
Alignment:
Q  27 gtaatatttgcattcaaagttgtgtaatcaatgcatt 63  Q
    |||||||||||||| |||||||| |||||||||||||    
T  3525346 gtaatatttgcattgaaagttgtataatcaatgcatt 3525382  T

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