View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11298_high_5 (Length: 309)
Name: NF11298_high_5
Description: NF11298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11298_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 5 - 293
Target Start/End: Complemental strand, 34696567 - 34696279
Alignment:
| Q |
5 |
cacctagttacatgttatgcaagtcctgaagatattgaatggtgcaatggtaaaagcccaatgtgcatcaaaggtgtggatgtgtttgctgtgtatttct |
104 |
Q |
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| T |
34696567 |
cacctagttacatgttatgcaagtcctgaagatattgaatggtgcaatggtaaaagcccaatgtgcatcaaaggtgtggatgtgtttgctgtgtatttct |
34696468 |
T |
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| Q |
105 |
tcaaggagaagaaactgaagctcatgaagtgttccgataaattggaagtttcactcgagccatttagttttgagctaatgacagtgtctccagtgagggt |
204 |
Q |
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| T |
34696467 |
tcaaggagaagaaactgaagctcatgaagtgttccgataaattggaagtttcactcgagccattcagttttgagctaatgacagtgtctccagtgagggt |
34696368 |
T |
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| Q |
205 |
gttttcaaaagggttgattcagtttgctccaatagggttggtgaacatgcttaactctggtggtgctgttcagtctgtggagtttgatg |
293 |
Q |
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| T |
34696367 |
gttttcaaaagggttgattcagtttgctccaatagggttggtgaacatgcttaactctggtggtgctgttcagtctgtggagtttgatg |
34696279 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 43637106 - 43637032
Alignment:
| Q |
22 |
tgcaagtcctgaagatattgaatggtgcaatggtaaaagcccaatgtgcatcaaaggtgtggatgtgtttgctgt |
96 |
Q |
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|||||||||| |||| ||||||||| |||| || || | |||||| |||||||||||||| ||||| |||||||| |
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| T |
43637106 |
tgcaagtcctaaagacattgaatggagcaaagggaacaacccaatttgcatcaaaggtgttgatgtatttgctgt |
43637032 |
T |
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