View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11298_high_7 (Length: 289)
Name: NF11298_high_7
Description: NF11298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11298_high_7 |
 | |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 8341703 - 8341973
Alignment:
| Q |
19 |
gaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaaaccggttatgttgaaaagcttgatctacacgattcatattat |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
8341703 |
gaaggacggtccaactgcagattgctgcaaatggaaaggaattcaatgcaacaatcaaaccggttatgttgaaaagcttgatctacaccattcacattat |
8341802 |
T |
|
| Q |
119 |
ttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaatttattg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8341803 |
ttgagtggtgaaatcaatccttcaataactgagttgtaacatctaacatatcttgacctcagttatttgaatactagtggtcaaattccaaaatttattg |
8341902 |
T |
|
| Q |
219 |
gatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaactt |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
8341903 |
gatcgttcagcaacttacgataccttgatctctcaaacggtggttatgagggaaagattcctactcaactt |
8341973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 126 - 257
Target Start/End: Original strand, 26727406 - 26727537
Alignment:
| Q |
126 |
gtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaatttattggatcgtt |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | ||| ||||| || ||||| |||||||| || || |
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|
| T |
26727406 |
gtgaaatcaatccttcaataactgagttgcaacatctaacatatctagaccttagttcattgatgattagaggtcatatcccaaattttattggctcctt |
26727505 |
T |
|
| Q |
226 |
cagcaacttacgataccttgatctctcaaatg |
257 |
Q |
| |
|
|| ||| |||||||||||| |||||||||||| |
|
|
| T |
26727506 |
catcaatttacgataccttaatctctcaaatg |
26727537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 30172 - 29896
Alignment:
| Q |
19 |
gaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaaaccggttatgttgaaaagcttgatctacacgattcata---- |
114 |
Q |
| |
|
|||||| | ||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| || | ||| | |
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|
| T |
30172 |
gaaggaggatccaaatgcagattgctgcaaatggaagggagttcaatgcaacaatcaaaccggttatgttgaaaagcttgatctgcatggttcggaaaca |
30073 |
T |
|
| Q |
115 |
--ttatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaat |
212 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| ||||||||||| ||||||| |
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|
| T |
30072 |
cgttgtttgagtggtgaaatcaatccttcaataactgagttgcaacatctaaaatatcttgacctcagatatttgaataccagtggtcaaatcccaaaat |
29973 |
T |
|
| Q |
213 |
ttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaactt |
289 |
Q |
| |
|
|||||||||| ||||||| |||| |||||||||||||||| |||||||||||| ||||||||||||| ||||||| |
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|
| T |
29972 |
ttattggatccatcagcaaattacaataccttgatctctcatttggtggttatgatgggaagattcctattcaactt |
29896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 168620 - 168896
Alignment:
| Q |
19 |
gaaggacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaaaccggttatgttgaaaagcttgatctacacgattcata---- |
114 |
Q |
| |
|
|||||| | ||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| || | ||| | |
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|
| T |
168620 |
gaaggaggatccaaatgcagattgctgcaaatggaagggagttcaatgcaacaatcaaaccggttatgttgaaaagcttgatctgcatggttcggaaaca |
168719 |
T |
|
| Q |
115 |
--ttatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaat |
212 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| ||||||||||| ||||||| |
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|
| T |
168720 |
cgttgtttgagtggtgaaatcaatccttcaataactgagttgcaacatctaaaatatcttgacctcagatatttgaataccagtggtcaaatcccaaaat |
168819 |
T |
|
| Q |
213 |
ttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaactt |
289 |
Q |
| |
|
|||||||||| ||||||| |||| |||||||||||||||| |||||||||||| ||||||||||||| ||||||| |
|
|
| T |
168820 |
ttattggatccatcagcaaattacaataccttgatctctcatttggtggttatgatgggaagattcctattcaactt |
168896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 117 - 280
Target Start/End: Original strand, 173733 - 173896
Alignment:
| Q |
117 |
atttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaatttat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
173733 |
atttgagtggtgaaatcaatccttcaataactgagttacaaaatctaacatatttagacctcagttatttgaatactagtagtcaaatctcaaaatttat |
173832 |
T |
|
| Q |
217 |
tggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcct |
280 |
Q |
| |
|
||| || |||||||| || || |||||||||| ||||||||| |||||| |||||| ||||| |
|
|
| T |
173833 |
tggctccttcagcaagttgcggcaccttgatctgtcaaatggtcattatgatgggaaggttcct |
173896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 173648 - 173712
Alignment:
| Q |
38 |
gattgctgcaaatggaaaggaattcaatgcaacaatcaaaccggttatgttgaaaagcttgatct |
102 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||| |||| ||||||||| ||| |||||||| |
|
|
| T |
173648 |
gattgctgcaaatggaagggagttcaatgcaacatcgaaactggttatgttcaaagtcttgatct |
173712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 38 - 278
Target Start/End: Original strand, 44611540 - 44611786
Alignment:
| Q |
38 |
gattgctgcaaatggaaaggaattcaatgcaacaatcaaaccggttatgttgaaaagcttgatctacacgattcatattat------ttgagtggtgaaa |
131 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||| |||||| ||||||||| ||| |||||||| || | || ||| ||| |||||||| |
|
|
| T |
44611540 |
gattgctgcaaatggaagggagttcaatgcaacattcaaactggttatgttcaaagtcttgatctgcatggctcgtatcgacgccgattgtttggtgaaa |
44611639 |
T |
|
| Q |
132 |
tcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaatttattggatcgttcagcaa |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| || ||| |||| |
|
|
| T |
44611640 |
tcaatccttcaataactgagttgcaacatctaacatatctaaacctcagttatctgaatactagtggtcaaatcccaaaatttattggctccttctgcaa |
44611739 |
T |
|
| Q |
232 |
cttacgataccttgatctctcaaatggtggttatgaggggaagattc |
278 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| ||| |||||||||| |
|
|
| T |
44611740 |
cttaagataccttgatctctcaaatagtggttttgatgggaagattc |
44611786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 108 - 289
Target Start/End: Original strand, 44144710 - 44144892
Alignment:
| Q |
108 |
attcatattatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattcc |
207 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| ||||||||||||||| |||||||||| || |
|
|
| T |
44144710 |
attcatatgatttgagtggtgaaatcaatccttcaataactgtgctgcaacatctaacacatctagacctaagttatttgaatactggtggtcaaatccc |
44144809 |
T |
|
| Q |
208 |
aaaatttattggatcgttcagcaacttacgatacc-ttgatctctcaaatggtggttatgaggggaagattcctactcaactt |
289 |
Q |
| |
|
|||||||||||| || |||||||| |||||| ||| ||||||||||| |||||||||||| |||||||||||| |||||||| |
|
|
| T |
44144810 |
aaaatttattggctccttcagcaagttacgacacctttgatctctcagttggtggttatgatgggaagattcctgctcaactt |
44144892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 115 - 289
Target Start/End: Complemental strand, 44785966 - 44785792
Alignment:
| Q |
115 |
ttatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaattt |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||| |||||||| |||||||||||||||| |||||| ||||| || |||||||||||||||| |
|
|
| T |
44785966 |
ttatttgagtggtgtaatcaatccttcaataactgagctgcgacatctaaaatatctagacctcagtcatttgattactaatgatcaaattccaaaattt |
44785867 |
T |
|
| Q |
215 |
attggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaactt |
289 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||| ||||||||| | || |||||||||||||||||| |
|
|
| T |
44785866 |
attggatccttcagcaacttacgataccttgacctctcagttggtggttacggtggaaagattcctactcaactt |
44785792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 27 - 285
Target Start/End: Original strand, 35898821 - 35899085
Alignment:
| Q |
27 |
gtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaaaccggttatgttgaaaagcttgatctacacgattcatat------tattt |
120 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||| ||||||||||||| ||||| |||||| || ||| |||||| | || | |||| | ||||| |
|
|
| T |
35898821 |
gtccaaatgcagattgctgcaaatggaaaggagttcaatgcaacaaccaaactggttatattcaaagtcttgatttgcatggttcaaaaacacgctattt |
35898920 |
T |
|
| Q |
121 |
gagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaatttattgga |
220 |
Q |
| |
|
||| || ||||||| |||| ||||||||| ||||||||||| |||||| ||||||| ||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35898921 |
gagaggcaaaatcaaccctttaataactgaattgcaacatcttacatatttagaccttggttttttgaatactagtggtcaaatcccaaaatttattggc |
35899020 |
T |
|
| Q |
221 |
tcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactca |
285 |
Q |
| |
|
|| ||||||||||| |||||| |||||||||||||| |||||| || |||||||||||| |||| |
|
|
| T |
35899021 |
tccttcagcaacttgcgatacattgatctctcaaatagtggtttcgatgggaagattcctgctca |
35899085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 256
Target Start/End: Complemental strand, 11544933 - 11544811
Alignment:
| Q |
134 |
aatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaatttattggatcgttcagcaact |
233 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| ||||||||||| | ||| || | |||||| |||||||||||||| || || | ||| | |
|
|
| T |
11544933 |
aatccttcaataactgagttacaacatctaaaatatttagacctcagtagtatgattattttcactcaaatcccaaaatttattggctccttaaccaagt |
11544834 |
T |
|
| Q |
234 |
tacgataccttgatctctcaaat |
256 |
Q |
| |
|
|| |||||||| ||||||||||| |
|
|
| T |
11544833 |
tatgataccttaatctctcaaat |
11544811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 44786060 - 44786005
Alignment:
| Q |
23 |
gacggtccaactgctgattgctgcaaatggaaaggaattcaatgcaacaatcaaac |
78 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
44786060 |
gacggtccaaatgcagattgttgcaaatgggaaggagttcaatgcaacaaccaaac |
44786005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 116 - 289
Target Start/End: Complemental strand, 29228802 - 29228629
Alignment:
| Q |
116 |
tatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaattta |
215 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
29228802 |
tatttgagtggtgaaataaattcttcactaactgagctgcaacatctaaaatatctagacctcagttatttgcatactagtggtcaaatcccaaaattta |
29228703 |
T |
|
| Q |
216 |
ttggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaactt |
289 |
Q |
| |
|
|||| || |||||||| |||| |||||| ||||||||| ||| |||||| |||||||||||| |||||||| |
|
|
| T |
29228702 |
ttggctccttcagcaagttacaatacctcaatctctcaacaggtcattatgatgggaagattccttctcaactt |
29228629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 116 - 289
Target Start/End: Complemental strand, 29342101 - 29341928
Alignment:
| Q |
116 |
tatttgagtggtgaaatcaatccttcaataactgagttgcaacatctaacatatctagacctcagttatttgaatactagtggtcaaattccaaaattta |
215 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
29342101 |
tatttgagtggtgaaataaattcttcactaactgagctgcaacatctaaaatatctagacctcagttatttgcatactagtggtcaaatcccaaaattta |
29342002 |
T |
|
| Q |
216 |
ttggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaactt |
289 |
Q |
| |
|
|||| || |||||||| |||| |||||| ||||||||| ||| |||||| |||||||||||| |||||||| |
|
|
| T |
29342001 |
ttggctccttcagcaagttacaatacctcaatctctcaacaggtcattatgatgggaagattccttctcaactt |
29341928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 29508317 - 29508253
Alignment:
| Q |
38 |
gattgctgcaaatggaaaggaattcaatgcaacaatcaaaccggttatgttgaaaagcttgatct |
102 |
Q |
| |
|
||||||||||||||||| ||| ||| ||||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
29508317 |
gattgctgcaaatggaagggagttcgatgcaacaatcaaacaggttatgttcaaagacttgatct |
29508253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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