View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11298_high_9 (Length: 257)
Name: NF11298_high_9
Description: NF11298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11298_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 27443352 - 27443128
Alignment:
| Q |
18 |
atatataccatagaaaaggaatgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggcttgattaatcttgttttgcaggcttgtg |
117 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27443352 |
atatataccatagaagaggaatgcaaaactaaggcatagagcaacacgagtgcttgtcattttggatatggcttgatgaatcttgttttgcaggcttgtg |
27443253 |
T |
|
| Q |
118 |
aatattttctctttcgattgtagtttgctgtttgaaggttattgatgaagttgttctctgcttcatgacatatatatatagccttcttttatcgatggtt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
27443252 |
aatattttctctttcgattgtagtttgctgtttgaaggtgattgatgaagttgttctctgcttcatgacataaatatatagccttcttctatcgatggtt |
27443153 |
T |
|
| Q |
218 |
tgaatcttaattcaacgaatggtat |
242 |
Q |
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||||||||||||||||||||||||| |
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| T |
27443152 |
tgaatcttaattcaacgaatggtat |
27443128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 195
Target Start/End: Original strand, 27221494 - 27221668
Alignment:
| Q |
23 |
taccatagaaaaggaatgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggctt--gattaatcttgttttgcaggcttgtgaat |
120 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
27221494 |
taccatagaagaggaatgcaaaactaaggcatagagcaacgcgggtgcttgtcattttggatatggcttttgatgaatcttgttttgcaggcttgtgaat |
27221593 |
T |
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| Q |
121 |
attttctctttcgattgtagtttgctgtttgaaggttattgatgaagttgttctctgcttcatgacatatatata |
195 |
Q |
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| T |
27221594 |
attttctctttcgattgtagtttgctgtttgtaagtgattgatgaagttgttctctgcttcgtgacatatatata |
27221668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 27215532 - 27215633
Alignment:
| Q |
23 |
taccatagaaaaggaatgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggc--ttgattaatcttgttttgcaggcttgtgaat |
120 |
Q |
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|||| ||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27215532 |
taccgtagaagaggaatgcaaaactaaggcacagagcaacacgggtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttgtgaat |
27215631 |
T |
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| Q |
121 |
at |
122 |
Q |
| |
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|| |
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| T |
27215632 |
at |
27215633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 246
Target Start/End: Original strand, 27433268 - 27433495
Alignment:
| Q |
23 |
taccatagaaaaggaatgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggcttgattaatcttgttttgcaggcttgtg----- |
117 |
Q |
| |
|
|||||||||| |||||||| || |||| ||||| ||||||| | ||| | ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27433268 |
taccatagaagaggaatgccaagctaaagcataaagcaacatgggtgttcttcattttggatatgacttgattaatcttgttttgcaggcttgtgaatat |
27433367 |
T |
|
| Q |
118 |
------aatattttctctttcgattgtag-tttgctgtttgaaggttattgatgaagttgttctctgcttcatgacatatatatatagccttcttttatc |
210 |
Q |
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| T |
27433368 |
tggtgcaatattttctctttcaattgtagtttttctgttt---ggtgattgatgaaattgctctctgcttcttgac--atatatatagcctac---tatg |
27433459 |
T |
|
| Q |
211 |
gatggtttgaatcttaattcaacgaatggtattcat |
246 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
27433460 |
gatggtttgaatcttaattcaacgaatggtattcat |
27433495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 27208270 - 27208352
Alignment:
| Q |
122 |
ttttctctttcgattgtagtttgctgtttgaaggttattgatgaagttgttctctgcttcatgacatatatatatagccttct |
204 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||| ||||| |||| |||||||||||||||||||||| |
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| T |
27208270 |
ttttctctttcgattgtagtttgctgtttgaaagtgattgatgaagtttctctcttcttcttgacatatatatatagccttct |
27208352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 27215653 - 27215758
Alignment:
| Q |
129 |
tttcgattgtagtttgctgtttgaaggttatt-gatgaagttgttctctgcttcatgacatatatatatagccttcttttatcgatggtttgaatcttaa |
227 |
Q |
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|||||||||||||||| ||| ||||||| ||| |||||||||| |||||||||| | ||||||||||| | || ||||||||||||||||| | | |
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| T |
27215653 |
tttcgattgtagtttgttgtgtgaaggtgatttgatgaagttgctctctgcttctttacatatatataga-----tttctatcgatggtttgaatcgtca |
27215747 |
T |
|
| Q |
228 |
ttcaacgaatg |
238 |
Q |
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||||||||||| |
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| T |
27215748 |
ttcaacgaatg |
27215758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 27390259 - 27390304
Alignment:
| Q |
20 |
atataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
65 |
Q |
| |
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||||||||||||| ||||||||||| |||||||| ||||||||||| |
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| T |
27390259 |
atataccatagaagaggaatgcaaagctaaggcagagagcaacacg |
27390304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 27410494 - 27410539
Alignment:
| Q |
20 |
atataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
65 |
Q |
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||||||||||||| ||||||||||| |||||||| ||||||||||| |
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| T |
27410494 |
atataccatagaagaggaatgcaaagctaaggcagagagcaacacg |
27410539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 27208178 - 27208225
Alignment:
| Q |
18 |
atatataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
65 |
Q |
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||||||||||||||| ||||||||||| |||| ||||| ||||||||| |
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| T |
27208178 |
atatataccatagaagaggaatgcaaagctaaagcataaagcaacacg |
27208225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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