View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11298_low_1 (Length: 700)
Name: NF11298_low_1
Description: NF11298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11298_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 22 - 352
Target Start/End: Original strand, 14738680 - 14739010
Alignment:
| Q |
22 |
aaaagtgtttgttgcgtagctaatgaaacactcatgttaataaataaaaccctagccatcatttatactatatcctcattattaccagcgtgtgacagta |
121 |
Q |
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| T |
14738680 |
aaaagtgtttgttgcgtagctaatgaaacactcatgttaataaataaaaccctagtcatcatttatactatatcctcattattaccagcgtgtgacagtg |
14738779 |
T |
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| Q |
122 |
aaaataagttcccgttttcttcaggagtatttattttactacatcatcattattacaagaaaagttcaaaagtacttgtggtaaataaacttgtgttact |
221 |
Q |
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| T |
14738780 |
aaaataagttcccgttttcttcaggagtatttattttactacatcctcattattacaagaaaagttcaaaagtacttgtggtaaataaacttgtgttact |
14738879 |
T |
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| Q |
222 |
tttacgtaattattcccatcagaaaaattggaaatttggcttatacttaggattgcaacagtgtttgttgggcactataatggttattatgaatgtgtag |
321 |
Q |
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| T |
14738880 |
tttacgtaattattcccatcagaaaaattggaaatttggcttatacttaggattgcaacagtgtttgttgggcactataatggttattatgaatgtgtag |
14738979 |
T |
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| Q |
322 |
ctaatgaaacactcttattaataatcatttt |
352 |
Q |
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| T |
14738980 |
ctaatgaaacactcttattaataatcatttt |
14739010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 338 - 690
Target Start/End: Original strand, 14739030 - 14739390
Alignment:
| Q |
338 |
attaataatcatttttgagtgtaacactaaaactaaggtccctaaaactttggtttggtgattgcttgtctgatttctgatttgttcagatctgttgaga |
437 |
Q |
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| T |
14739030 |
attaataatcatttttgagtgtaacactaaaactaaggtccctaaaactttggtttggtgattgcttacctgatttctgatttgttcagatctgttgaga |
14739129 |
T |
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| Q |
438 |
tctgcagctttcgtggcttttggggtgagatctgtcatcgttccactgattttgttcttgctaagactatttgcagttgttcgttgcggtgagagtttgt |
537 |
Q |
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| T |
14739130 |
tatgcagctttcgtggcttttggggtg----ctgtcatcgttccactggttttgttcttgctaagactatttgcagctgttcgttgcggtgagagtttgt |
14739225 |
T |
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| Q |
538 |
t----------gtgccatgatgcttgctgttttttgcaggggcagttggtccatg-acccgtctgtgttggcggtcggtttatacaccatttnnnnnnnn |
626 |
Q |
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| T |
14739226 |
tgcgctcgaaagggccatgatgcttgctgttttttgcaggggcagttggtccatgaacccgtctgtgttggcggtcggtttatacaccatttaaaaaaaa |
14739325 |
T |
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| Q |
627 |
ga-ggggggttgttggtatgtttcagacaccatccctaaaaaatatgaactcatgcttgtctctg |
690 |
Q |
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| T |
14739326 |
gagggggggttgttggtacgtttcagacaccatcgctaaaaaagatgagctcatgcttgtctctg |
14739390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 113 - 265
Target Start/End: Original strand, 14744779 - 14744932
Alignment:
| Q |
113 |
gtgacagtaaaaataagttcccgttttcttcaggagtatttatttt-actacatcatcattattacaagaaaagttcaaaagtacttgtggtaaataaac |
211 |
Q |
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| T |
14744779 |
gtgacagcgaaaataaggtcccgttttactcgcgagtattgatttttactacatcctcattattacaagaaaagttcaaaagtacttgtagtaaataaac |
14744878 |
T |
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| Q |
212 |
ttgtgttacttttacgtaattattcccatcagaaaaattggaaatttggcttat |
265 |
Q |
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| T |
14744879 |
ctgtgttacttttacgtaattactcctatccgaaatattggaaaattgtcttat |
14744932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 308 - 379
Target Start/End: Original strand, 14744929 - 14745006
Alignment:
| Q |
308 |
ttatgaatgtgtagctaatgaaacactcttattaataatcatttt------tgagtgtaacactaaaactaaggtccc |
379 |
Q |
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| T |
14744929 |
ttatgaatgtgtagctaatgaaacactcttattaataatcattttctagtgtaagtgtaacactaaaactaaggtccc |
14745006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 407 - 611
Target Start/End: Original strand, 11853777 - 11853990
Alignment:
| Q |
407 |
ctgatttctgatttgttcagatctgttgagatctgcagctttcgtggcttttggggtgagatctgtcatcgttccactgattttgttcttgctaagacta |
506 |
Q |
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| T |
11853777 |
ctgatttctaatttgtacagatctgttgagatctgcagctttcgtggaatttgggttg----ctatcaccgttccactgattttgttgttaccaagactc |
11853872 |
T |
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| Q |
507 |
tttgcagttgttcgttgcggtgagagtttgttgt----------gccatgatgcttgctgtttt--ttgcaggggcagttggtccatg-acccgtctgtg |
593 |
Q |
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| T |
11853873 |
gtcgcagctgttctttacggtcataatttgttgtgctcgaaagggccatgatgcttgctgtttttgttgcaggggcagttggtccatgaacctgtctgtg |
11853972 |
T |
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| Q |
594 |
ttggcggtcggtttatac |
611 |
Q |
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| T |
11853973 |
ttgacggtcggttcatac |
11853990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 501
Target Start/End: Original strand, 38190944 - 38191030
Alignment:
| Q |
411 |
tttctgatttgttcagatctgttgagatctgcagctttcgtggcttttggggtgagatctgtcatcgttccactgattttgttcttgctaa |
501 |
Q |
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| T |
38190944 |
tttctgatttgtccatatctgttgagatttacagctttcgtggaatttgggctg----ctgtcaccgttctactggttttgttgttgctaa |
38191030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 583
Target Start/End: Original strand, 38191079 - 38191123
Alignment:
| Q |
541 |
gccatgatgcttgctgtttt--ttgcaggggcagttggtccatga |
583 |
Q |
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| T |
38191079 |
gccatgatgcttgctgtttttgttgcagggacagttggtccatga |
38191123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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