View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11298_low_14 (Length: 246)
Name: NF11298_low_14
Description: NF11298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11298_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 3 - 233
Target Start/End: Complemental strand, 27442823 - 27442594
Alignment:
| Q |
3 |
agtctatctattacaatga-ttaccaattaatttatcaaagatatgacaaatctgggggattaatatgtgtatatttgtcaaggattggatgattggttt |
101 |
Q |
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| T |
27442823 |
agtctctctattacaatgagttaccaattaatttatcaaagatatgacaaatgtgggggattaatatgtgtatatttgtcaaggattggatgattggttt |
27442724 |
T |
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| Q |
102 |
gcgagggacaaaatttggtatccattgttcttttataaattatttttgtccatgaagttgaataaaaacatattgaagctgtgtaatttaatttttctgt |
201 |
Q |
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| T |
27442723 |
gcgagggacaaaatttggtatccattgttcttttataaattatttttgtccatgaagttgaat--aaacttattgaagttgtgtaatttaatttttctgt |
27442626 |
T |
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| Q |
202 |
gttagactttcggtattagcaatgtttcctct |
233 |
Q |
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| T |
27442625 |
gttagactttcggtattagcaatgtttcctct |
27442594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 27433801 - 27434007
Alignment:
| Q |
1 |
ttagtctatctattacaatga-ttaccaattaatttatcaaagatatgacaaatctgg-gggattaatatgtgtatatttgtcaaggattggatgattgg |
98 |
Q |
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| T |
27433801 |
ttagtctctctattataatgagttaacgattaatttatctaagatatgaaaattgttcagggattaatatgtgtatattagtcaaggattggatgattgg |
27433900 |
T |
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| Q |
99 |
tttgcgagggacaaaatttggtatccattgttcttttataaattatttttgtccatgaagttgaataaaaacatattgaagctgtgtaatttaatttttc |
198 |
Q |
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| T |
27433901 |
tttgcgagggacaaaatttggtctccattgatcttctataaattatttttgtccatgaagttgaat--aaacttattgaagttgtgtagtttaatttttc |
27433998 |
T |
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| Q |
199 |
tgtgttaga |
207 |
Q |
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|||||||| |
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| T |
27433999 |
cgtgttaga |
27434007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 27434051 - 27434138
Alignment:
| Q |
130 |
tcttttataaattatttttgtccatgaagttgaataaaaacatattgaagctgtgtaatttaatttttctgtgttagactttcggtatta |
219 |
Q |
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| T |
27434051 |
tcttttataatttattgttgcccgtgaagttgaatgaatt--tattgaagttgtgtaatttaatttttccgtgttagacttttggtatta |
27434138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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