View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11298_low_15 (Length: 242)
Name: NF11298_low_15
Description: NF11298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11298_low_15 |
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| [»] scaffold0027 (2 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 3653 - 3705
Alignment:
| Q |
101 |
ttgcgaagacaagaaaaccaccatcaaaacgcacaagaccgtcgctccttatt |
153 |
Q |
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| T |
3653 |
ttgcgaagacaagaaaaccaccagcaaaacgcacaagatcatcgctccttatt |
3705 |
T |
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Target: scaffold0027; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 199
Target Start/End: Original strand, 3771 - 3801
Alignment:
| Q |
169 |
cacactagctaagtttgaaatatatgatatc |
199 |
Q |
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| T |
3771 |
cacactagctaagtttgaaatatatgatatc |
3801 |
T |
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