View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11298_low_18 (Length: 216)
Name: NF11298_low_18
Description: NF11298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11298_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 19722622 - 19722487
Alignment:
| Q |
17 |
atagaggatgatgattatagaaatcaattaaacttcttaaattatttccttttgctacatttagaatctcatagctactatgaaaaaattcataacacca |
116 |
Q |
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| T |
19722622 |
atagaggatgatgattatagaaatcaattaaactttttaaattattttcttttgctacatttggaatctcatagctactatgaaaaaattcataacacca |
19722523 |
T |
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| Q |
117 |
aacttgaaaatttgcgtgattaaaaaattcaaaata |
152 |
Q |
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| T |
19722522 |
aattggaaaatttgcgtgattaaaaaattcaaaata |
19722487 |
T |
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Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 8772063 - 8772131
Alignment:
| Q |
87 |
atagctactatgaaaa---aattcataacaccaaacttgaaaatttgcgtgattaaaaaattcaaaata |
152 |
Q |
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| T |
8772063 |
atagctactatgaaaaaaaaattcataacaccaaacttgaaaatttgcgtgattaaaaaattcaaaata |
8772131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 7558651 - 7558585
Alignment:
| Q |
87 |
atagctactatgaaaaaa-ttcataacaccaaacttgaaaatttgcgtgattaaaaaattcaaaata |
152 |
Q |
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| T |
7558651 |
atagctactataaaaaaaattcataacaccaaacttaaaaatttgcgtgattaaaaaattcaaaata |
7558585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 22732020 - 22731961
Alignment:
| Q |
23 |
gatgatgattatagaaatcaattaaacttcttaaattatttccttttgctacatttagaa |
82 |
Q |
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| T |
22732020 |
gatgatgattatagaaatcaattaaacattttaaattattgccttttgctacatttagaa |
22731961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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