View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11298_low_2 (Length: 659)
Name: NF11298_low_2
Description: NF11298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11298_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 572; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 1 - 641
Target Start/End: Original strand, 44625196 - 44625841
Alignment:
| Q |
1 |
attcagttacttggttgagaagaatgaacaagtttttgcagttgaaaaatgtaatgtaaagaaatgtggtgtactagtggaaacctgctaaataggatta |
100 |
Q |
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| T |
44625196 |
attcagttacttggttgagaagaatgaacaagtttttgcagttgaaaaatgtaatgtaaagaaatgtgatgtactagtggaaacctgctaaataggatta |
44625295 |
T |
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| Q |
101 |
gaccactatattgttggcttcttagagtttctttctcttgtattttaatttgttatgtaaaaacatgttcatgagtaatttttgcattcattttttatta |
200 |
Q |
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||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
44625296 |
gactactatattgttggcttcttagactttctttctcttgtattttaatttgttatgtagaaacatgttcatgagtaatttttgcactcattttttatta |
44625395 |
T |
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| Q |
201 |
ttataacgaaaccggtcaccaatgataagttcaaatactgtttggacatgttacatgtttcttagtgttaacgttatacaacaaatactcatagcggttt |
300 |
Q |
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| T |
44625396 |
ttataacgaaaccggtcaccaatgataagttcaaatactgtttggacatgttacatgtttcttagtgttaacgttatacaacaaatactcatagcggttt |
44625495 |
T |
|
| Q |
301 |
gatattcaccaaggtagagattgttaggtacgactcatagacaatgtcaaatacccttgcgtcaaatttagagggaaattgtcgcgctgttgttctcaat |
400 |
Q |
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| T |
44625496 |
gatattcaccaaggtagagattgttaggtacgactcatagacaatgtcaaatacccttgcgtcaaatttagagggaaattgtcgcgctgttgttctaaat |
44625595 |
T |
|
| Q |
401 |
agtaatttattcagtgacacaggaatcgtacatgg---attatgattcaataatcacacaacaacaatctaaataatcagcaactaattatgattcaaaa |
497 |
Q |
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| T |
44625596 |
agtaaattattcagtgacacaggaatcgtgcatggattattattattcaataatcacacaacaacaatctaaataatcagcaactaattatgattccaaa |
44625695 |
T |
|
| Q |
498 |
agaagaag-aaaagtaaaagatattcaactagcagcatatat-tatatggtagctccgaggtagctagctacttgagcaagcagtttagaattggtttgg |
595 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44625696 |
agaagaagaaaaagaaaaagatattcaactagcagcatatatatatatggtagctccgaggtagctagctacttgagcaagcagtttagaattggtttgg |
44625795 |
T |
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| Q |
596 |
tgtgtgaggctcttccatgagcattatggcagaaggagaaaacctt |
641 |
Q |
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| T |
44625796 |
tgtgtgaggctcttccatgagcattatggcagaaggagaaaacctt |
44625841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 44749260 - 44749177
Alignment:
| Q |
1 |
attcagttacttggttgagaagaatgaacaagtttttgcagttgaaaaatgtaatgtaaagaaatgtggtgtactagtggaaacctgctaa |
91 |
Q |
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|||||||||||||| |||||||||| |||||| ||||||| | | ||||| || |||||||||||||| ||||||||||||||||| |
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| T |
44749260 |
attcagttacttggctgagaagaatcaacaagattttgcactaggaaaatcta----aaagaaatgtggtg---tagtggaaacctgctaa |
44749177 |
T |
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