View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11298_low_5 (Length: 396)

Name: NF11298_low_5
Description: NF11298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11298_low_5
NF11298_low_5
[»] chr4 (14 HSPs)
chr4 (147-303)||(26436166-26436325)
chr4 (151-298)||(31632970-31633118)
chr4 (1-116)||(26436018-26436133)
chr4 (1-72)||(26434238-26434309)
chr4 (1-72)||(26832949-26833020)
chr4 (1-68)||(23415706-23415773)
chr4 (1-66)||(24307437-24307502)
chr4 (1-62)||(23453375-23453436)
chr4 (1-61)||(23408544-23408604)
chr4 (1-65)||(23886041-23886105)
chr4 (1-64)||(23402288-23402351)
chr4 (1-62)||(34662044-34662105)
chr4 (1-62)||(23868946-23869007)
chr4 (340-384)||(26436364-26436408)
[»] chr1 (3 HSPs)
chr1 (151-298)||(45576522-45576670)
chr1 (1-66)||(33216659-33216724)
chr1 (1-90)||(45576417-45576506)
[»] chr7 (1 HSPs)
chr7 (1-66)||(47317496-47317561)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 8e-77; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 147 - 303
Target Start/End: Original strand, 26436166 - 26436325
Alignment:
Q  147 gatttgtaatgaactgattggatcttgttgatcccttttgttaatgaaaatggtggaattaatgatcttttttgtata---tataattgtgcaagtttat 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  26436166 gatttgtaatgaactgattggatcttgttgatcccttttgttaatgaaaatggtggaattaatgatcttttttgtatatactataattgtgcaagtttat 26436265  T
Q  244 gttttatttgtttgggccagagtaaccaagattcaatatctttgtactatttgaatattg 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26436266 gttttatttgtttgggccagagtaaccaagattcaatatctttgtactatttgaatattg 26436325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 151 - 298
Target Start/End: Original strand, 31632970 - 31633118
Alignment:
Q  151 tgtaatgaactgattggatcttgttgatcccttttgttaatgaaaatggtggaattaatgatcttttttgtata-tataattgtgcaagtttatgtttta 249  Q
    |||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||    
T  31632970 tgtattgaattgattggatcttgttgatcctttttgttaatgaaaatggtggaattaataatcctttttgtataatataattgtgctagtttatgtttta 31633069  T
Q  250 tttgtttgggccagagtaaccaagattcaatatctttgtactatttgaa 298  Q
    | ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  31633070 tctgtttggaccagagtaaccaagattcaacctctttgtactatttgaa 31633118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 26436018 - 26436133
Alignment:
Q  1 ttggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttgaaaactagtttcctataggttgttactatgtctgt 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||    
T  26436018 ttggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttagatttgagatctagtttcctataggttgttactatgtctgt 26436117  T
Q  101 ttatgcaccattagtc 116  Q
    ||||||||||||||||    
T  26436118 ttatgcaccattagtc 26436133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26434238 - 26434309
Alignment:
Q  1 ttggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttgaaaacta 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26434238 ttggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttgaaaacta 26434309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26832949 - 26833020
Alignment:
Q  1 ttggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttgaaaacta 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26832949 ttggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttgaaaacta 26833020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 23415773 - 23415706
Alignment:
Q  1 ttggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttgaaa 68  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  23415773 ttggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctcttagacttgaaa 23415706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24307437 - 24307502
Alignment:
Q  1 ttggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttga 66  Q
    |||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||    
T  24307437 ttggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttagatttga 24307502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23453436 - 23453375
Alignment:
Q  1 ttggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagat 62  Q
    ||||||||||||||||||||||| || ||||||||||| || ||||||||||||||||||||    
T  23453436 ttggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttcttagat 23453375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 23408604 - 23408544
Alignment:
Q  1 ttggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga 61  Q
    ||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||||    
T  23408604 ttggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctcttaga 23408544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 23886041 - 23886105
Alignment:
Q  1 ttggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttg 65  Q
    ||||||||||||||||| |||||||| ||||| ||||| || |||||||||||||||||||||||    
T  23886041 ttggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 23886105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 23402288 - 23402351
Alignment:
Q  1 ttggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagattt 64  Q
    ||||||||||||||||| || ||||| ||||| ||||| || ||||||||||||||||||||||    
T  23402288 ttggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttcttagattt 23402351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 34662105 - 34662044
Alignment:
Q  1 ttggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagat 62  Q
    ||||| ||||||||||| |||||||||||||| ||||| || |||||||| |||||||||||    
T  34662105 ttggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttcttagat 34662044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 23868946 - 23869007
Alignment:
Q  1 ttggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagat 62  Q
    |||||||| |||||||||||||| || || || ||||| |||||||| ||||||||||||||    
T  23868946 ttggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat 23869007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 26436364 - 26436408
Alignment:
Q  340 agagatgaaatgtatatttggtttggtgtttcctccacattgatg 384  Q
    |||||||||| |||||||||||||||||||| ||||| |||||||    
T  26436364 agagatgaaaagtatatttggtttggtgtttactccatattgatg 26436408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 151 - 298
Target Start/End: Original strand, 45576522 - 45576670
Alignment:
Q  151 tgtaatgaactgattggatcttgttgatcccttttgttaatgaaaatggtggaattaatgatcttttttgtata-tataattgtgcaagtttatgtttta 249  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||| ||||||| || ||||||||||| |||||||||||||    
T  45576522 tgtattgaactgattggatcttgtttatcctttttgttaatgaaaatggtggaattaataatcctttttgtctaatataattgtgctagtttatgtttta 45576621  T
Q  250 tttgtttgggccagagtaaccaagattcaatatctttgtactatttgaa 298  Q
    | ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  45576622 tctgtttggaccagagtaaccaagattcaacctctttgtactatttgaa 45576670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 33216659 - 33216724
Alignment:
Q  1 ttggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttga 66  Q
    |||||||| ||||||||||||||||||||||||||||| || ||||||||| ||||||| ||||||    
T  33216659 ttggccaaacatgctgtttctgagggtaccaaggctgtgaccaagtttactggttcttaaatttga 33216724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 45576417 - 45576506
Alignment:
Q  1 ttggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttgaaaactagtttcctataggttgtta 90  Q
    ||||| ||||||| |||||||||||||||||| ||||| || || || || || |||||||||||| | || |||| |||||||||||||    
T  45576417 ttggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttagatttgagatcttgtttactataggttgtta 45576506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 47317496 - 47317561
Alignment:
Q  1 ttggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttga 66  Q
    |||||||| |||| |||||||||||||||||| ||||| || ||||||||||||||||| ||||||    
T  47317496 ttggccaaacatgttgtttctgagggtaccaaagctgtgaccaagtttactagttcttaaatttga 47317561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University