View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11298_low_6 (Length: 396)

Name: NF11298_low_6
Description: NF11298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11298_low_6
NF11298_low_6
[»] chr7 (34 HSPs)
chr7 (128-380)||(6361692-6361944)
chr7 (1-127)||(38643550-38643676)
chr7 (1-129)||(38644634-38644762)
chr7 (11-127)||(4227156-4227272)
chr7 (11-127)||(12643100-12643216)
chr7 (11-127)||(45915792-45915908)
chr7 (11-126)||(12644117-12644232)
chr7 (15-127)||(4226125-4226237)
chr7 (27-127)||(7158231-7158331)
chr7 (27-127)||(12930772-12930872)
chr7 (11-127)||(47558030-47558146)
chr7 (11-127)||(45914526-45914640)
chr7 (27-127)||(12929287-12929387)
chr7 (6-127)||(27479987-27480108)
chr7 (50-127)||(37284109-37284186)
chr7 (50-127)||(37289333-37289410)
chr7 (11-120)||(22661364-22661473)
chr7 (11-127)||(27480731-27480847)
chr7 (50-120)||(31695637-31695707)
chr7 (27-106)||(27558136-27558215)
chr7 (27-112)||(7159213-7159297)
chr7 (9-69)||(47559046-47559106)
chr7 (1-36)||(17102111-17102146)
chr7 (1-36)||(27396897-27396932)
chr7 (1-36)||(27991830-27991865)
chr7 (1-36)||(28469310-28469345)
chr7 (1-36)||(30948431-30948466)
chr7 (1-36)||(32053445-32053480)
chr7 (1-36)||(32680866-32680901)
chr7 (1-36)||(40379860-40379895)
chr7 (1-36)||(42731510-42731545)
chr7 (50-120)||(40022552-40022621)
chr7 (60-113)||(12929461-12929514)
chr7 (52-120)||(31694478-31694546)
[»] scaffold0347 (2 HSPs)
scaffold0347 (1-129)||(13607-13735)
scaffold0347 (1-125)||(14567-14691)
[»] chr2 (30 HSPs)
chr2 (11-129)||(25624417-25624535)
chr2 (11-128)||(25623287-25623404)
chr2 (27-127)||(24387351-24387451)
chr2 (26-127)||(24388255-24388356)
chr2 (50-127)||(20101770-20101847)
chr2 (11-127)||(29957817-29957933)
chr2 (11-129)||(20983245-20983363)
chr2 (50-127)||(20103167-20103244)
chr2 (27-127)||(20982524-20982624)
chr2 (27-120)||(19620793-19620886)
chr2 (50-129)||(29958570-29958649)
chr2 (54-120)||(7983837-7983903)
chr2 (50-120)||(33882895-33882965)
chr2 (54-120)||(43236511-43236577)
chr2 (27-104)||(28599450-28599527)
chr2 (1-36)||(2318249-2318284)
chr2 (1-36)||(6657969-6658004)
chr2 (1-36)||(11163325-11163360)
chr2 (1-36)||(14900754-14900789)
chr2 (1-36)||(15848179-15848214)
chr2 (1-36)||(16099146-16099181)
chr2 (1-36)||(33739794-33739829)
chr2 (1-36)||(37895649-37895684)
chr2 (1-36)||(39423606-39423641)
chr2 (1-36)||(39498401-39498436)
chr2 (1-36)||(44714063-44714098)
chr2 (27-104)||(9694026-9694103)
chr2 (54-106)||(7981068-7981120)
chr2 (1-41)||(17266484-17266524)
chr2 (27-127)||(43681856-43681956)
[»] chr1 (46 HSPs)
chr1 (1-120)||(25065932-25066051)
chr1 (3-120)||(25064940-25065057)
chr1 (11-127)||(13295135-13295251)
chr1 (27-126)||(2829539-2829645)
chr1 (27-120)||(6344262-6344355)
chr1 (27-120)||(32619391-32619484)
chr1 (11-128)||(46282070-46282187)
chr1 (27-127)||(2828193-2828293)
chr1 (50-129)||(51935222-51935301)
chr1 (15-120)||(6345625-6345730)
chr1 (40-113)||(32622369-32622442)
chr1 (11-120)||(46282777-46282886)
chr1 (55-127)||(13295608-13295680)
chr1 (11-127)||(49093041-49093157)
chr1 (11-120)||(50062932-50063041)
chr1 (50-120)||(32238706-32238776)
chr1 (27-98)||(10019657-10019728)
chr1 (1-44)||(16970837-16970880)
chr1 (1-51)||(34849087-34849137)
chr1 (1-51)||(34850367-34850417)
chr1 (11-89)||(49093797-49093875)
chr1 (50-120)||(52563658-52563728)
chr1 (1-41)||(10304009-10304049)
chr1 (47-127)||(28534817-28534896)
chr1 (1-37)||(31514588-31514624)
chr1 (1-36)||(183493-183528)
chr1 (1-36)||(1103552-1103587)
chr1 (1-36)||(6367653-6367688)
chr1 (1-36)||(14879062-14879097)
chr1 (1-36)||(24009843-24009878)
chr1 (1-36)||(24905438-24905473)
chr1 (1-36)||(25647975-25648010)
chr1 (1-36)||(28011454-28011489)
chr1 (27-106)||(33347700-33347779)
chr1 (1-36)||(33442865-33442900)
chr1 (1-36)||(40210672-40210707)
chr1 (1-36)||(40772598-40772633)
chr1 (1-36)||(42248564-42248599)
chr1 (27-106)||(49002897-49002976)
chr1 (27-129)||(2953748-2953850)
chr1 (4-65)||(13914372-13914433)
chr1 (1-41)||(10304157-10304197)
chr1 (1-37)||(37578494-37578530)
chr1 (1-41)||(42267389-42267429)
chr1 (58-106)||(49003190-49003238)
chr1 (1-65)||(52134130-52134194)
[»] chr5 (52 HSPs)
chr5 (11-127)||(22870446-22870562)
chr5 (11-120)||(22869612-22869721)
chr5 (11-127)||(20856932-20857048)
chr5 (7-120)||(36477356-36477469)
chr5 (27-127)||(14744730-14744830)
chr5 (6-120)||(36476772-36476886)
chr5 (46-127)||(31107931-31108012)
chr5 (50-127)||(8654107-8654184)
chr5 (11-127)||(20857531-20857647)
chr5 (27-127)||(21978971-21979071)
chr5 (11-127)||(20072853-20072969)
chr5 (11-129)||(39181780-39181898)
chr5 (27-120)||(21978017-21978110)
chr5 (27-120)||(31108338-31108430)
chr5 (11-127)||(39181057-39181173)
chr5 (6-129)||(20072119-20072242)
chr5 (11-120)||(16532900-16533009)
chr5 (43-120)||(8673774-8673851)
chr5 (11-128)||(16533609-16533726)
chr5 (27-106)||(21260886-21260965)
chr5 (50-113)||(21972104-21972166)
chr5 (27-89)||(39402148-39402210)
chr5 (1-36)||(297285-297320)
chr5 (1-36)||(3529144-3529179)
chr5 (1-36)||(5993980-5994015)
chr5 (1-36)||(6150545-6150580)
chr5 (1-36)||(6758136-6758171)
chr5 (1-36)||(8322495-8322530)
chr5 (27-98)||(8323085-8323156)
chr5 (1-36)||(14194725-14194760)
chr5 (27-106)||(14745469-14745548)
chr5 (27-126)||(18934714-18934813)
chr5 (1-36)||(24547427-24547462)
chr5 (27-126)||(25253087-25253186)
chr5 (27-126)||(25316877-25316976)
chr5 (1-36)||(28269690-28269725)
chr5 (1-36)||(28771140-28771175)
chr5 (1-36)||(29646664-29646699)
chr5 (1-36)||(31482673-31482708)
chr5 (1-36)||(32242333-32242368)
chr5 (1-36)||(35512239-35512274)
chr5 (1-36)||(35920486-35920521)
chr5 (1-36)||(38442159-38442194)
chr5 (1-36)||(38475301-38475336)
chr5 (1-36)||(39453391-39453426)
chr5 (1-36)||(41930607-41930642)
chr5 (60-113)||(12990912-12990965)
chr5 (60-113)||(13064533-13064586)
chr5 (1-41)||(12904840-12904880)
chr5 (27-127)||(25253370-25253470)
chr5 (27-127)||(25317161-25317261)
chr5 (27-127)||(32052508-32052608)
[»] chr3 (38 HSPs)
chr3 (1-127)||(32717079-32717205)
chr3 (11-127)||(29192977-29193093)
chr3 (11-120)||(29192042-29192151)
chr3 (7-120)||(37249206-37249319)
chr3 (27-127)||(22736690-22736790)
chr3 (11-91)||(32716285-32716365)
chr3 (11-127)||(2943913-2944029)
chr3 (11-120)||(37249782-37249890)
chr3 (27-120)||(44481953-44482046)
chr3 (11-129)||(45279268-45279386)
chr3 (11-127)||(48189083-48189199)
chr3 (11-129)||(11026616-11026734)
chr3 (27-127)||(1757304-1757404)
chr3 (11-127)||(2944650-2944766)
chr3 (11-101)||(1756576-1756666)
chr3 (11-113)||(48188392-48188494)
chr3 (11-120)||(45278551-45278660)
chr3 (50-113)||(44476063-44476126)
chr3 (11-113)||(43105818-43105920)
chr3 (27-113)||(21255815-21255901)
chr3 (27-127)||(1741387-1741487)
chr3 (1-65)||(33689681-33689745)
chr3 (1-36)||(2796270-2796305)
chr3 (1-36)||(8041707-8041742)
chr3 (1-36)||(9294260-9294295)
chr3 (1-36)||(10770762-10770797)
chr3 (1-36)||(23458281-23458316)
chr3 (1-36)||(26463900-26463935)
chr3 (1-36)||(36314569-36314604)
chr3 (1-36)||(40758235-40758270)
chr3 (1-36)||(48322648-48322683)
chr3 (1-36)||(51994188-51994223)
chr3 (1-36)||(54466514-54466549)
chr3 (60-113)||(21300340-21300393)
chr3 (40-101)||(43105259-43105320)
chr3 (25-98)||(46670537-46670610)
chr3 (25-106)||(55036690-55036771)
chr3 (27-83)||(22735403-22735459)
[»] chr4 (38 HSPs)
chr4 (11-127)||(23455673-23455789)
chr4 (11-127)||(23454954-23455070)
chr4 (7-120)||(38982576-38982689)
chr4 (27-127)||(53477080-53477180)
chr4 (36-129)||(54591587-54591680)
chr4 (11-127)||(56556582-56556698)
chr4 (52-127)||(13336863-13336938)
chr4 (11-126)||(56557309-56557424)
chr4 (11-129)||(38813552-38813670)
chr4 (50-120)||(54590150-54590220)
chr4 (52-120)||(22882352-22882420)
chr4 (52-120)||(22934016-22934084)
chr4 (11-127)||(38814311-38814427)
chr4 (11-127)||(52816407-52816523)
chr4 (27-127)||(55013089-55013188)
chr4 (1-65)||(4982997-4983061)
chr4 (11-127)||(52815663-52815779)
chr4 (57-120)||(9254413-9254476)
chr4 (1-65)||(14801798-14801862)
chr4 (1-36)||(9145037-9145072)
chr4 (1-36)||(13058128-13058163)
chr4 (1-36)||(23613400-23613435)
chr4 (1-36)||(24711202-24711237)
chr4 (1-36)||(27934623-27934658)
chr4 (1-36)||(34765682-34765717)
chr4 (1-36)||(36009115-36009150)
chr4 (1-36)||(42738302-42738337)
chr4 (1-36)||(43155798-43155833)
chr4 (1-36)||(44967340-44967375)
chr4 (1-36)||(49879478-49879513)
chr4 (58-113)||(50246173-50246228)
chr4 (1-36)||(50418939-50418974)
chr4 (60-113)||(22249940-22249993)
chr4 (1-37)||(10781786-10781822)
chr4 (1-37)||(16605692-16605728)
chr4 (1-33)||(17356224-17356256)
chr4 (1-37)||(24349764-24349800)
chr4 (1-41)||(52298112-52298152)
[»] chr8 (43 HSPs)
chr8 (27-126)||(1231527-1231626)
chr8 (11-127)||(34213764-34213880)
chr8 (27-115)||(7393145-7393233)
chr8 (27-127)||(25288076-25288176)
chr8 (27-127)||(38598964-38599064)
chr8 (50-127)||(33497639-33497716)
chr8 (27-127)||(1232799-1232897)
chr8 (11-127)||(34665770-34665886)
chr8 (27-129)||(24377179-24377281)
chr8 (50-120)||(24379019-24379089)
chr8 (43-113)||(33497030-33497100)
chr8 (27-120)||(4970132-4970225)
chr8 (11-127)||(34214512-34214629)
chr8 (56-127)||(4463455-4463526)
chr8 (50-120)||(29574749-29574819)
chr8 (27-85)||(7392250-7392308)
chr8 (60-130)||(27436560-27436630)
chr8 (11-101)||(34666525-34666614)
chr8 (1-36)||(1425324-1425359)
chr8 (1-36)||(3041727-3041762)
chr8 (1-36)||(16388828-16388863)
chr8 (1-36)||(23663816-23663851)
chr8 (1-36)||(23698546-23698581)
chr8 (1-36)||(35756673-35756708)
chr8 (1-36)||(36325325-36325360)
chr8 (1-36)||(36928567-36928602)
chr8 (1-36)||(38845570-38845605)
chr8 (1-36)||(38862709-38862744)
chr8 (1-36)||(39071767-39071802)
chr8 (1-36)||(40775921-40775956)
chr8 (1-36)||(44407128-44407163)
chr8 (1-35)||(31608815-31608849)
chr8 (54-120)||(36574824-36574890)
chr8 (60-113)||(547642-547695)
chr8 (27-104)||(9632351-9632428)
chr8 (60-129)||(27437552-27437621)
chr8 (60-113)||(36623560-36623613)
chr8 (60-113)||(37342989-37343042)
chr8 (60-113)||(43866835-43866888)
chr8 (1-37)||(12199221-12199257)
chr8 (1-37)||(12443649-12443685)
chr8 (58-106)||(26740033-26740081)
chr8 (52-120)||(29575910-29575978)
[»] scaffold0009 (2 HSPs)
scaffold0009 (27-127)||(261001-261101)
scaffold0009 (25-127)||(262439-262541)
[»] scaffold1493 (1 HSPs)
scaffold1493 (27-127)||(593-693)
[»] chr6 (23 HSPs)
chr6 (11-127)||(4116799-4116915)
chr6 (11-127)||(4117531-4117647)
chr6 (11-127)||(14656480-14656596)
chr6 (27-127)||(17784385-17784485)
chr6 (27-127)||(33401126-33401226)
chr6 (50-120)||(8427388-8427458)
chr6 (11-129)||(33399964-33400082)
chr6 (11-113)||(1661414-1661516)
chr6 (11-127)||(14657193-14657309)
chr6 (58-130)||(738012-738084)
chr6 (30-130)||(8427197-8427297)
chr6 (27-127)||(15819774-15819874)
chr6 (27-126)||(3299843-3299942)
chr6 (1-36)||(12080727-12080762)
chr6 (1-36)||(28000656-28000691)
chr6 (1-36)||(30337540-30337575)
chr6 (1-36)||(30803952-30803987)
chr6 (1-36)||(33517625-33517660)
chr6 (60-130)||(3299749-3299819)
chr6 (60-106)||(19296441-19296487)
chr6 (27-127)||(5064335-5064435)
chr6 (58-106)||(9607631-9607679)
chr6 (1-65)||(30725821-30725885)
[»] scaffold0182 (2 HSPs)
scaffold0182 (46-127)||(14396-14477)
scaffold0182 (50-127)||(13134-13211)
[»] scaffold0018 (1 HSPs)
scaffold0018 (27-128)||(73108-73209)
[»] scaffold0279 (1 HSPs)
scaffold0279 (27-106)||(10874-10953)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-37)||(139762-139798)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-65)||(37865-37929)
[»] scaffold0559 (1 HSPs)
scaffold0559 (1-36)||(1324-1359)
[»] scaffold0031 (1 HSPs)
scaffold0031 (1-36)||(69056-69091)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-36)||(141865-141900)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-36)||(1860-1895)


Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 128 - 380
Target Start/End: Complemental strand, 6361944 - 6361692
Alignment:
Q  128 aattcacaacataaagctactttcgattggttaaaccaaaacttctcaagattccatgtaaattattgaaggaaatcgtggctacaattttagatcactc 227  Q
    ||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  6361944 aattcacaacataaagctactttcgattggttaaacccaaaggtctcaagattccatgtaaattattgaaggaaactgtggctacaattttagatcactc 6361845  T
Q  228 aatatgttgcagaatgcgcggcaaatataggaaattgtctctgtttgaagacttcattgtgtatcattcttctagaattctccattctatttgctctttt 327  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6361844 aatatgtagcacaatgcgcggcaaatataggaaattgtctctgtttgaagacttcattgtgtatcattcttctagaattctccattctatttgctctttt 6361745  T
Q  328 tccctctaaaaacattactctatttagatattatatcaaaatattgtgcatag 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6361744 tccctctaaaaacattactctatttagatattatatcaaaatattgtgcatag 6361692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 38643676 - 38643550
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  38643676 ttaagtggggagagggacgaaatcttaaatgattaatttttacaggagcaaaatgggaggattagtaaggtcaaggatgaaaaatcaaatggcctataat 38643577  T
Q  101 tgcaggaatgaaatgcatatgtaagcc 127  Q
    |||||| ||||||||||||| ||||||    
T  38643576 tgcagggatgaaatgcatatttaagcc 38643550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 38644634 - 38644762
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataat 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||||| |||||| | |||| |||||||||||||||||||||    
T  38644634 ttaagtggggagagggatgaaatcttaaatgattaatttttacaaggtcaaaatggaaggattaataagcttagggataaaaaatcaaatgacctataat 38644733  T
Q  101 tgcaggaatgaaatgcatatgtaagccaa 129  Q
    |||| ||||||||||||||| ||||||||    
T  38644734 tgcaagaatgaaatgcatatttaagccaa 38644762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 4227156 - 4227272
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||||| ||||||| |||||||||||| ||  |||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||    
T  4227156 agagggacgaaattttaaatggttaatttttacagggacaaaatgggaggattagtaagctcaaggatgaaaaatcaaatggcctataattacagggatg 4227255  T
Q  111 aaatgcatatgtaagcc 127  Q
    |||||||||| ||||||    
T  4227256 aaatgcatatttaagcc 4227272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 12643216 - 12643100
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||||| ||||||| ||||||||| || ||||||||||||||||||||||||||||  |||||||||||||||| ||||||||| |||| |||    
T  12643216 agagggacgaaattttaaatggttaatttttgcaggggtaaaatgggaggattagtaagctcagagatgaaaaatcaaatggcctataattacagggatg 12643117  T
Q  111 aaatgcatatgtaagcc 127  Q
    |||||||||| ||||||    
T  12643116 aaatgcatatttaagcc 12643100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 45915792 - 45915908
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||| ||| |||||||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||||||| ||||||||| |||| |||    
T  45915792 agagggacggaattttaaatgattaatttttacaggggtaaaataggaggattagtaagcttagggatgaaaaatcaaatggcctataattacagggatg 45915891  T
Q  111 aaatgcatatgtaagcc 127  Q
    |||||||||| ||||||    
T  45915892 aaatgcatatttaagcc 45915908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 12644117 - 12644232
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| ||| |||||  ||| |||    
T  12644117 agagggacgaaattttaaatgattaatttttacaggagtaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctgtaattatagggatg 12644216  T
Q  111 aaatgcatatgtaagc 126  Q
    |||||||||| |||||    
T  12644217 aaatgcatatttaagc 12644232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 4226237 - 4226125
Alignment:
Q  15 ggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaat 114  Q
    ||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||||| |||| ||||||||| ||||||||| |||| |||||||    
T  4226237 ggacgaaattttaaatgattaatttttacaggggcaaaatggaaggattagtaagctcatggttgaagaatcaaatggcctataattacagggatgaaat 4226138  T
Q  115 gcatatgtaagcc 127  Q
    |||||| ||||||    
T  4226137 gcatatttaagcc 4226125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 7158331 - 7158231
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||||| |||||| ||| ||||||| |||||||||||| ||||||||||||||||||||| |||||||||| ||| ||||||||||||| |||||    
T  7158331 aaatgattaatatttacaggggcaaaatggaaggattagtaagttcatggatgaaaaatcaaatggcctataattgtagggatgaaatgcatatttaagc 7158232  T
Q  127 c 127  Q
    |    
T  7158231 c 7158231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 12930872 - 12930772
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||||| ||| || ||| ||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  12930872 aaatgattaatatttgcaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaatgacctataattgcagggatgaaatgcatatttaagc 12930773  T
Q  127 c 127  Q
    |    
T  12930772 c 12930772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 47558146 - 47558030
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||||| ||||||| |||||||||||| ||| ||||||||||||||||||| |||| ||||||||||||||||  |||||||||  ||  |||    
T  47558146 agagggacgaaattttaaatggttaatttttacaggggcaaaatgggaggattagtaaactcagggatgaaaaatcaaatagcctataattaaagagatg 47558047  T
Q  111 aaatgcatatgtaagcc 127  Q
    |||||||||| ||||||    
T  47558046 aaatgcatatttaagcc 47558030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 45914640 - 45914526
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||||| |||||||||||||||||||| ||| |||||| ||| ||||||||||| | ||||||||||||||||| ||||||||| |||  |||    
T  45914640 agagggacgaaattttaaatgattaatttttaca-gggcaaaatgagag-attagtaagcttagggatgaaaaatcaaatggcctataattacagagatg 45914543  T
Q  111 aaatgcatatgtaagcc 127  Q
    |||||||||| ||||||    
T  45914542 aaatgcatatttaagcc 45914526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 12929387 - 12929287
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||||| ||| || ||| |||||||||||||||||||| ||| ||||||||||||||||  |||||| ||||||| ||||||||||||| |||||    
T  12929387 aaatgattaatatttgcaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatagcctatatttgcagggatgaaatgcatatttaagc 12929288  T
Q  127 c 127  Q
    |    
T  12929287 c 12929287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 27480108 - 27479987
Alignment:
Q  6 tggggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcag 105  Q
    |||| ||||||||||| | | ||||||||| |  ||||| ||| ||||| |||||||||||||||||| ||||||||||||||  | |||||||||||||    
T  27480108 tgggaagagggacgaactttcaaatgattagtaattacaggggcaaaataggaggattagtaagctcagggatgaaaaatcaagcggcctataattgcag 27480009  T
Q  106 gaatgaaatgcatatgtaagcc 127  Q
    | |||||| |||||| ||||||    
T  27480008 ggatgaaaagcatatttaagcc 27479987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 37284186 - 37284109
Alignment:
Q  50 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagcc 127  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| |||||| ||||||    
T  37284186 aaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattacagggatgaaaagcatatttaagcc 37284109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 37289333 - 37289410
Alignment:
Q  50 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagcc 127  Q
    |||||||||||||||||||||||| |||||||||| |||||| ||||||||| |||| |||||| |||||| ||||||    
T  37289333 aaaatgggaggattagtaagctcagggatgaaaaaccaaatggcctataattacagggatgaaaagcatatttaagcc 37289410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 22661473 - 22661364
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||| ||||||||||||||| | ||||||||| |||| |||    
T  22661473 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcaaggatgaaaaatcaaacggcctataattacagggatg 22661374  T
Q  111 aaatgcatat 120  Q
    ||| ||||||    
T  22661373 aaaagcatat 22661364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 27480731 - 27480847
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||  ||| ||||||||||||||| | ||||||||| |||| |||    
T  27480731 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaaaatcaaggatgaaaaatcaaacggcctataattacagggatg 27480830  T
Q  111 aaatgcatatgtaagcc 127  Q
    |||  ||||| ||||||    
T  27480831 aaaaacatatttaagcc 27480847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 31695637 - 31695707
Alignment:
Q  50 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    ||||||| |||||||||||| | | ||||||||  |||||||||||||| ||||||| |||||||||||||    
T  31695637 aaaatggaaggattagtaagtttagggatgaaatttcaaatgacctatatttgcagggatgaaatgcatat 31695707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 27558136 - 27558215
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcagg 106  Q
    ||||||||||| ||| ||| || ||||||| |||||||||||  || |||| ||||| |||||||||||||| |||||||    
T  27558136 aaatgattaatatttgcaatggcaaaatggaaggattagtaacttcgtggacgaaaattcaaatgacctatatttgcagg 27558215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 7159213 - 7159297
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaa 112  Q
    ||||||||||| ||| || |||||||||||||||||||||||  ||| | | ||||| |||||||| ||||| ||||||| |||||    
T  7159213 aaatgattaatatttgca-gggtaaaatgggaggattagtaacttcaggaacgaaaattcaaatgatctatatttgcagggatgaa 7159297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 47559046 - 47559106
Alignment:
Q  9 ggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaag 69  Q
    ||||||| || |||| ||||||| |||||||||||| ||  ||||||||||||||||||||    
T  47559046 ggagaggaacaaaattttaaatggttaatttttacagggagaaaatgggaggattagtaag 47559106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 17102146 - 17102111
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  17102146 ttaagtggggagagggacgaaattttaaatgattaa 17102111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 27396897 - 27396932
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  27396897 ttaagtggggagagggacgaaattttaaatgattaa 27396932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 27991865 - 27991830
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  27991865 ttaagtggggagagggacgaaattttaaatgattaa 27991830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 28469310 - 28469345
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  28469310 ttaagtggggagagggacgaaattttaaatgattaa 28469345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 30948431 - 30948466
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  30948431 ttaagtggggagagggacgaaattttaaatgattaa 30948466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 32053445 - 32053480
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  32053445 ttaagtggggagagggacgaaattttaaatgattaa 32053480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 32680866 - 32680901
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  32680866 ttaagtggggagagggacgaaattttaaatgattaa 32680901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 40379895 - 40379860
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  40379895 ttaagtggggagagggacgaaattttaaatgattaa 40379860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 42731545 - 42731510
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  42731545 ttaagtggggagagggacgaaattttaaatgattaa 42731510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 40022552 - 40022621
Alignment:
Q  50 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    ||||||| |||||||||||| ||| ||||||||  |||||||| ||||| ||||||| ||||||| |||||    
T  40022552 aaaatggaaggattagtaagatcagggatgaaatttcaaatga-ctatatttgcagggatgaaatacatat 40022621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 12929514 - 12929461
Alignment:
Q  60 gattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaa 113  Q
    |||||||||  ||||||| ||||| |||||||||||||| ||||||| ||||||    
T  12929514 gattagtaacttcatggacgaaaattcaaatgacctatatttgcagggatgaaa 12929461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 31694546 - 31694478
Alignment:
Q  52 aatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    |||||||||||||||||  | | ||||||||  |||||||  ||||| ||||||| |||||||||||||    
T  31694546 aatgggaggattagtaaatttagggatgaaatttcaaatggactatatttgcagggatgaaatgcatat 31694478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 13735 - 13607
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |||||||||||||||| ||||||||||||||||| ||||||||    
T  13735 ttaagtggggagagggacgaaatcttaaatgattaatttttataggggcaaaatggaaggattagtaagctcagggatgaaaaatcaaatggcctataat 13636  T
Q  101 tgcaggaatgaaatgcatatgtaagccaa 129  Q
    |||||| ||||||||||||| ||||||||    
T  13635 tgcagggatgaaatgcatatttaagccaa 13607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 14567 - 14691
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  14567 ttaagtggggagagggacgaaatcttaaatgattaatttttataggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataat 14666  T
Q  101 tgcaggaatgaaatgcatatgtaag 125  Q
    || ||||||||||||||||| ||||    
T  14667 tgaaggaatgaaatgcatatttaag 14691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 25624417 - 25624535
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||    
T  25624417 agagggacgaaattttaaatgattaatttttacaggggaaaaatgggaggattagtaagctcagggatgaaaaatcaaatgacctataattacagggatg 25624516  T
Q  111 aaatgcatatgtaagccaa 129  Q
    |||||||||| ||||||||    
T  25624517 aaatgcatatttaagccaa 25624535  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 25623404 - 25623287
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||  ||| |||    
T  25623404 agagggacgaaattttaaatgattaatttttacaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattatagggatg 25623305  T
Q  111 aaatgcatatgtaagcca 128  Q
    |||||||||| |||||||    
T  25623304 aaatgcatatttaagcca 25623287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 24387451 - 24387351
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    |||||||||||||||||| ||  |||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||| |||||    
T  24387451 aaatgattaatttttacatggacaaaatgggaggattagtaagctcagggatgaaaaattaaatggcctataattgcagggatgaaatgcatatttaagc 24387352  T
Q  127 c 127  Q
    |    
T  24387351 c 24387351  T

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Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 24388255 - 24388356
Alignment:
Q  26 taaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaag 125  Q
    |||||||||||||||||||| || ||||||| |||||||||||||||| ||||||||||||||||  | |||||||||||| ||||||||||||| ||||    
T  24388255 taaatgattaatttttacaatggcaaaatggaaggattagtaagctcagggatgaaaaatcaaattgcttataattgcagggatgaaatgcatatttaag 24388354  T
Q  126 cc 127  Q
    ||    
T  24388355 cc 24388356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 20101847 - 20101770
Alignment:
Q  50 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagcc 127  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| |||||| ||||||    
T  20101847 aaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattacagggatgaaaagcatatttaagcc 20101770  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 29957933 - 29957817
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||| ||||||||||||||| | ||||||||| |||| |||    
T  29957933 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatg 29957834  T
Q  111 aaatgcatatgtaagcc 127  Q
    ||| |||||| ||||||    
T  29957833 aaaagcatatttaagcc 29957817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 20983245 - 20983363
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||| ||||||||||||||| |  |||||||| |||| |||    
T  20983245 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggtctataattacagggatg 20983344  T
Q  111 aaatgcatatgtaagccaa 129  Q
    ||| |||||| ||||||||    
T  20983345 aaaagcatatttaagccaa 20983363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 20103167 - 20103244
Alignment:
Q  50 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagcc 127  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||||||||| |||| || ||| |||||| ||||||    
T  20103167 aaaatgggaggattagtaagctcagggatgaaaaatctaatggcctataattacagggataaaaagcatatttaagcc 20103244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 20982624 - 20982524
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||| |  ||||| ||| ||||||| |||||||||||| ||| ||||||||||||||| | ||||||||| |||| |||||| |||||| |||||    
T  20982624 aaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatatttaagc 20982525  T
Q  127 c 127  Q
    |    
T  20982524 c 20982524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 19620793 - 19620886
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    ||||||||||| ||| || ||| ||||||| |||||||||||| ||| ||||||||  |||||||||||||| ||| ||| | |||||||||||    
T  19620793 aaatgattaatatttgcaggggcaaaatggaaggattagtaagttcagggatgaaatttcaaatgacctatatttgtagggacgaaatgcatat 19620886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 29958570 - 29958649
Alignment:
Q  50 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagccaa 129  Q
    ||||||| |||||||||||| ||| |||||||||||||||   ||||||||| |||| ||||||  ||||| ||||||||    
T  29958570 aaaatggaaggattagtaagttcagggatgaaaaatcaaacagcctataattacagggatgaaaaacatatttaagccaa 29958649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 7983837 - 7983903
Alignment:
Q  54 tgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    |||||||||||||||| |||| |||||||  |||||||||||||| |||| |  |||||||||||||    
T  7983837 tgggaggattagtaagttcatagatgaaatttcaaatgacctatatttgctgagatgaaatgcatat 7983903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 33882895 - 33882965
Alignment:
Q  50 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    ||||||||||||||||||| |||||  ||||||  ||||||| | |||| ||||||| |||||||||||||    
T  33882895 aaaatgggaggattagtaacctcatatatgaaatttcaaatgccttatatttgcagggatgaaatgcatat 33882965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 43236577 - 43236511
Alignment:
Q  54 tgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    |||||||||||||||| ||| ||||||||  ||||||| |||||| ||||||| || ||||||||||    
T  43236577 tgggaggattagtaagttcagggatgaaatttcaaatggcctatatttgcagggataaaatgcatat 43236511  T

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Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 28599527 - 28599450
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgca 104  Q
    ||||||||||| ||| ||| || ||||||| |||||||||||  ||||||| ||||| |||||||| ||||| |||||    
T  28599527 aaatgattaatatttgcaatggcaaaatggaaggattagtaacttcatggacgaaaattcaaatgatctatatttgca 28599450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 2318284 - 2318249
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  2318284 ttaagtggggagagggacgaaattttaaatgattaa 2318249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6658004 - 6657969
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6658004 ttaagtggggagagggacgaaattttaaatgattaa 6657969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 11163325 - 11163360
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  11163325 ttaagtggggagagggacgaaattttaaatgattaa 11163360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 14900754 - 14900789
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14900754 ttaagtggggagagggacgaaattttaaatgattaa 14900789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 15848214 - 15848179
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  15848214 ttaagtggggagagggacgaaattttaaatgattaa 15848179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 16099181 - 16099146
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  16099181 ttaagtggggagagggacgaaattttaaatgattaa 16099146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 33739829 - 33739794
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  33739829 ttaagtggggagagggacgaaattttaaatgattaa 33739794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 37895649 - 37895684
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  37895649 ttaagtggggagagggacgaaattttaaatgattaa 37895684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 39423641 - 39423606
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39423641 ttaagtggggagagggacgaaattttaaatgattaa 39423606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 39498436 - 39498401
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39498436 ttaagtggggagagggacgaaattttaaatgattaa 39498401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 44714063 - 44714098
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  44714063 ttaagtggggagagggacgaaattttaaatgattaa 44714098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 9694026 - 9694103
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgca 104  Q
    ||||||||||| ||| ||| |  ||||||| |||||||||||  ||| ||| ||||| |||||||||||||| |||||    
T  9694026 aaatgattaatatttgcaatgacaaaatggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgca 9694103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 7981120 - 7981068
Alignment:
Q  54 tgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcagg 106  Q
    |||||||||||||||| ||  ||||||||  |||||||||||||| |||||||    
T  7981120 tgggaggattagtaagttcggggatgaaatttcaaatgacctatagttgcagg 7981068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 17266524 - 17266484
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaattttt 41  Q
    |||||||||||||||||| |||| |||||||||||| ||||    
T  17266524 ttaagtggggagagggaccaaattttaaatgattaaatttt 17266484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 43681956 - 43681856
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||||| ||| ||| || ||||||| | |||||||||  | ||||| ||||| ||||||||| |||| ||||||| | ||||  ||||| |||||    
T  43681956 aaatgattaatatttgcaatggcaaaatggaatgattagtaactttatggacgaaaattcaaatgacatatatttgcagggacgaaagacatatttaagc 43681857  T
Q  127 c 127  Q
    |    
T  43681856 c 43681856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 25065932 - 25066051
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataat 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||| | ||||||    
T  25065932 ttaagtggagagagggacgaaatcttaaatgattaatttttacaggggtaaaatggaaggattagtaagctcagggatgaaaaatcaaatggcttataat 25066031  T
Q  101 tgcaggaatgaaatgcatat 120  Q
    |  ||| |||||||||||||    
T  25066032 tatagggatgaaatgcatat 25066051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 25065057 - 25064940
Alignment:
Q  3 aagtggggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattg 102  Q
    ||||| |||||||||||||||||||||||||||||||||| | ||  | |||||||||||||||||| ||| |||||||||||||||| |||||||||||    
T  25065057 aagtgaggagagggacgaaatcttaaatgattaatttttatagggacagaatgggaggattagtaagatcagggatgaaaaatcaaattacctataattg 25064958  T
Q  103 caggaatgaaatgcatat 120  Q
    |||| |||||||||||||    
T  25064957 cagggatgaaatgcatat 25064940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 13295251 - 13295135
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    |||||||||| || |||||||||||||||||||||||| ||||||| |||||||||||||||| || |||||||||||||||||||||||| ||||  ||    
T  13295251 agagggacgacattttaaatgattaatttttacaagggcaaaatggaaggattagtaagctcaggggtgaaaaatcaaatgacctataattacaggggtg 13295152  T
Q  111 aaatgcatatgtaagcc 127  Q
    |||||||||| ||||||    
T  13295151 aaatgcatatttaagcc 13295135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 2829539 - 2829645
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaa-------atcaaatgacctataattgcaggaatgaaatgcata 119  Q
    ||||||||||| ||| || |||||||||||||||||||||||||||| |||||||||       ||||||||||||||||||| ||| ||||||||||||    
T  2829539 aaatgattaatatttgcaggggtaaaatgggaggattagtaagctcaaggatgaaaaatcaaatatcaaatgacctataattgtagggatgaaatgcata 2829638  T
Q  120 tgtaagc 126  Q
    | |||||    
T  2829639 tttaagc 2829645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 6344355 - 6344262
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    ||||| ||||| ||| |||||| |||||||||||||||||||| ||||||||||||  ||||||||||  ||||| |||| |||||||||||||    
T  6344355 aaatgtttaatatttgcaagggcaaaatgggaggattagtaagttcatggatgaaatttcaaatgacccctaattacagggatgaaatgcatat 6344262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 32619484 - 32619391
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    ||||||||| |  ||||| ||| |||||||||||||||||||||||| ||||||||||||||||| || |||||| |||| |||||| ||||||    
T  32619484 aaatgattagtaattacaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcccataattacagggatgaaaagcatat 32619391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 46282187 - 46282070
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||| ||||||||||||||| ||||||||||| |||| |||    
T  46282187 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacgacctataattacagggatg 46282088  T
Q  111 aaatgcatatgtaagcca 128  Q
    |||  ||||| |||||||    
T  46282087 aaaaacatatttaagcca 46282070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 2828293 - 2828193
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||||| ||| ||  || ||||| | |||||||||||| | |||||||||||||||||||| ||||||||||| | ||||||||||||| |||||    
T  2828293 aaatgattaatatttgcagaggcaaaatagaaggattagtaagtttatggatgaaaaatcaaatgatctataattgcaaggatgaaatgcatatttaagc 2828194  T
Q  127 c 127  Q
    |    
T  2828193 c 2828193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 51935222 - 51935301
Alignment:
Q  50 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagccaa 129  Q
    |||||||||||||||| ||||||| ||||||||||||||||||| ||||||| || | |||||| |||||| ||||||||    
T  51935222 aaaatgggaggattagaaagctcagggatgaaaaatcaaatgacatataattacatggatgaaaagcatatttaagccaa 51935301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 6345625 - 6345730
Alignment:
Q  15 ggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaat 114  Q
    |||| |||| ||||||| ||||| ||| || ||| ||||||| |||||||||||| ||| ||||||||  ||||||||||  |||||||||| |||||||    
T  6345625 ggactaaattttaaatgcttaatatttgcaggggcaaaatggaaggattagtaagttcagggatgaaatttcaaatgacccctaattgcagggatgaaat 6345724  T
Q  115 gcatat 120  Q
    ||||||    
T  6345725 gcatat 6345730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 32622369 - 32622442
Alignment:
Q  40 ttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaa 113  Q
    ||||| ||| |||||||||||||||||||||||| ||||||||||||||||| || |||||| |||| ||||||    
T  32622369 ttacaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcccataattacagggatgaaa 32622442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 46282777 - 46282886
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||| ||||||||||||||| | ||||||||| |||| |||    
T  46282777 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatg 46282876  T
Q  111 aaatgcatat 120  Q
    ||| ||||||    
T  46282877 aaaagcatat 46282886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 13295608 - 13295680
Alignment:
Q  55 gggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagcc 127  Q
    |||||| ||||||||||||  |||||||||||||||| ||||||||| |||| ||||||||||||| ||||||    
T  13295608 gggagggttagtaagctcagagatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagcc 13295680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 49093157 - 49093041
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||| ||||||||||||||| | ||||||||| |||| |||    
T  49093157 agagggacgaactttcaaatgattagtaattacatgggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatg 49093058  T
Q  111 aaatgcatatgtaagcc 127  Q
    ||| |||| | ||||||    
T  49093057 aaaagcatgtttaagcc 49093041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 50062932 - 50063041
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  |||||  || ||||||| |||||||||||| ||| ||||||||||||||| | ||||||||| |||| |||    
T  50062932 agagggacgaactttcaaatgattagtaattacagaggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatg 50063031  T
Q  111 aaatgcatat 120  Q
    ||| ||||||    
T  50063032 aaaagcatat 50063041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 32238776 - 32238706
Alignment:
Q  50 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    |||||||||||||||||||| ||| ||||||||  ||||||  |||||| ||||||| |||||||||||||    
T  32238776 aaaatgggaggattagtaagttcagggatgaaatttcaaatagcctatatttgcagggatgaaatgcatat 32238706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 10019657 - 10019728
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctata 98  Q
    ||||||||||| ||| ||| || ||||||| |||||||||||  ||| ||||||||| ||||||||||||||    
T  10019657 aaatgattaatatttgcaatggcaaaatggaaggattagtaacttcagggatgaaaattcaaatgacctata 10019728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 16970837 - 16970880
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaatttttaca 44  Q
    ||||||||||||||||||||||| |||||||||||| |||||||    
T  16970837 ttaagtggggagagggacgaaattttaaatgattaaattttaca 16970880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34849137 - 34849087
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaatttttacaagggtaa 51  Q
    ||||| ||||||||||||||||| |||||||||||| |||| |||||||||    
T  34849137 ttaagaggggagagggacgaaattttaaatgattaaattttgcaagggtaa 34849087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 34850367 - 34850417
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaatttttacaagggtaa 51  Q
    ||||||||||||||||| ||||| |||||||||||| |||| |||||||||    
T  34850367 ttaagtggggagagggatgaaattttaaatgattaaattttgcaagggtaa 34850417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 49093797 - 49093875
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaa 89  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||| |||||||||||||||    
T  49093797 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaa 49093875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 52563728 - 52563658
Alignment:
Q  50 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    ||||||||||||||||||| |||| ||||||||   |||||  |||||| ||||||| |||||||||||||    
T  52563728 aaaatgggaggattagtaacctcaaggatgaaattccaaataccctatatttgcagggatgaaatgcatat 52563658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10304049 - 10304009
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaattttt 41  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  10304049 ttaagtggggagagggacgaaattttaaatgattaaatttt 10304009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 28534817 - 28534896
Alignment:
Q  47 ggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagcc 127  Q
    |||||||||| |||||||||||| ||| ||||||||  ||||||| |||||| || || ||| ||||||||||| ||||||    
T  28534817 ggtaaaatggaaggattagtaagttcagggatgaaatttcaaatgccctatatttaca-gaacgaaatgcatatttaagcc 28534896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31514588 - 31514624
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaat 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  31514588 ttaagtggggagagggacgaaattttaaatgattaat 31514624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 183493 - 183528
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  183493 ttaagtggggagagggacgaaattttaaatgattaa 183528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 1103587 - 1103552
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  1103587 ttaagtggggagagggacgaaattttaaatgattaa 1103552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6367688 - 6367653
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6367688 ttaagtggggagagggacgaaattttaaatgattaa 6367653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 14879097 - 14879062
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14879097 ttaagtggggagagggacgaaattttaaatgattaa 14879062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 24009843 - 24009878
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  24009843 ttaagtggggagagggacgaaattttaaatgattaa 24009878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 24905438 - 24905473
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  24905438 ttaagtggggagagggacgaaattttaaatgattaa 24905473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 25648010 - 25647975
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  25648010 ttaagtggggagagggacgaaattttaaatgattaa 25647975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 28011489 - 28011454
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  28011489 ttaagtggggagagggacgaaattttaaatgattaa 28011454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 33347700 - 33347779
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcagg 106  Q
    ||||||||||| ||| |||||| | | ||| |||||||||||  ||| ||| ||||| |||||||||||||| |||||||    
T  33347700 aaatgattaatatttgcaagggcagattggaaggattagtaacttcaaggacgaaaattcaaatgacctatatttgcagg 33347779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 33442865 - 33442900
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  33442865 ttaagtggggagagggacgaaattttaaatgattaa 33442900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 40210672 - 40210707
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  40210672 ttaagtggggagagggacgaaattttaaatgattaa 40210707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 40772633 - 40772598
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  40772633 ttaagtggggagagggacgaaattttaaatgattaa 40772598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 42248599 - 42248564
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  42248599 ttaagtggggagagggacgaaattttaaatgattaa 42248564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 49002976 - 49002897
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcagg 106  Q
    ||||||||||| ||| || ||| | | ||| |||||||||||  ||||||| ||||| |||||||||||||| |||||||    
T  49002976 aaatgattaatatttgcaggggcagattggaaggattagtaacttcatggacgaaaattcaaatgacctatatttgcagg 49002897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 2953748 - 2953850
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||||| ||| || ||| | | ||| |||||||||||  ||| ||| ||||| |||||||||||||| ||||||| | ||||  ||||| |||||    
T  2953748 aaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaagc 2953847  T
Q  127 caa 129  Q
    |||    
T  2953848 caa 2953850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 13914372 - 13914433
Alignment:
Q  4 agtggggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattag 65  Q
    |||||||||||||||||||| ||||||||||||    |||||||||||| ||  ||||||||    
T  13914372 agtggggagagggacgaaattttaaatgattaaacaatacaagggtaaattgccaggattag 13914433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10304157 - 10304197
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaattttt 41  Q
    |||||||||||||| |||||||| |||||||||||| ||||    
T  10304157 ttaagtggggagagagacgaaattttaaatgattaaatttt 10304197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37578494 - 37578530
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaat 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  37578494 ttaagtggggagagtgacgaaattttaaatgattaat 37578530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 42267429 - 42267389
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaattttt 41  Q
    |||||||||||||| |||||||| |||||||||||| ||||    
T  42267429 ttaagtggggagagagacgaaatattaaatgattaaatttt 42267389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 49003190 - 49003238
Alignment:
Q  58 aggattagtaagctcatggatgaaaaatcaaatgacctataattgcagg 106  Q
    |||||||||||  ||||||| ||||| |||||||||||||| |||||||    
T  49003190 aggattagtaacttcatggacgaaaattcaaatgacctatatttgcagg 49003238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 52134194 - 52134130
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattag 65  Q
    ||||||||||||||||||||||| ||||| ||||||   ||||| || |||||||  ||||||||    
T  52134194 ttaagtggggagagggacgaaattttaaacgattaacaattacagggttaaaatgccaggattag 52134130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 52)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 22870446 - 22870562
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    |||| |||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||    
T  22870446 agagagacgaaattttaaatgattaatttttacaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattacagggatg 22870545  T
Q  111 aaatgcatatgtaagcc 127  Q
    |||||||||| ||||||    
T  22870546 aaatgcatatttaagcc 22870562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 22869721 - 22869612
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||||| ||||||| |||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||| || | |||    
T  22869721 agagggacgaaattttaaatggttaatttttacaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattacaaggatg 22869622  T
Q  111 aaatgcatat 120  Q
    ||||||||||    
T  22869621 aaatgcatat 22869612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 20857048 - 20856932
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||||| | |||||||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||||||| | ||||||||| |||| |||    
T  20857048 agagggacgaaatttcaaatgattaacttttacaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaacggcctataattacagggatg 20856949  T
Q  111 aaatgcatatgtaagcc 127  Q
    ||| |||||| ||||||    
T  20856948 aaaagcatatttaagcc 20856932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 36477356 - 36477469
Alignment:
Q  7 ggggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcagg 106  Q
    ||||||||||||||| | | ||||||||| |  ||||| ||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  36477356 ggggagagggacgaactttcaaatgattagtaattacaggggcaaaatgggaggattagtaagctcatggatgaaaaatcaaacggcctataattgcagg 36477455  T
Q  107 aatgaaatgcatat 120  Q
     |||||| ||||||    
T  36477456 gatgaaaagcatat 36477469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 14744730 - 14744830
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||||| ||| || ||| |||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||| ||||||||||||| |||||    
T  14744730 aaatgattaatatttgcaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatgacatataattgcagggatgaaatgcatatttaagc 14744829  T
Q  127 c 127  Q
    |    
T  14744830 c 14744830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 36476886 - 36476772
Alignment:
Q  6 tggggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcag 105  Q
    |||| ||||||||||| | | ||||||||| |  ||||||||| |||||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  36476886 tgggaagagggacgaactttcaaatgattagtaattacaagggcaaaatgggaggattagtaagctcagggatgaaaaatcaaacggcctataattgcag 36476787  T
Q  106 gaatgaaatgcatat 120  Q
    | |||||| ||||||    
T  36476786 ggatgaaaagcatat 36476772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 31108012 - 31107931
Alignment:
Q  46 gggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagcc 127  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||    
T  31108012 gggtaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcagggatgaaatgcatatttaagcc 31107931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 8654184 - 8654107
Alignment:
Q  50 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagcc 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||  ||||| ||||||    
T  8654184 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattacagggatgaaaaacatatttaagcc 8654107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 20857531 - 20857647
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||||| | |||||||||| ||||||| ||| |||||||||||||||||||||| | | ||||||||||||| | ||||||||| || | |||    
T  20857531 agagggacgaaatttcaaatgattaacttttacaggggcaaaatgggaggattagtaagcttaggaatgaaaaatcaaacggcctataattacatggatg 20857630  T
Q  111 aaatgcatatgtaagcc 127  Q
    ||| |||||| ||||||    
T  20857631 aaaagcatatttaagcc 20857647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 21978971 - 21979071
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    |||| ||||||||||||| || |||||| |||||||||||||| ||  ||||||||||||||||| | |||||||||||| ||||||||||||| |||||    
T  21978971 aaattattaatttttacagggataaaataggaggattagtaagttcgaggatgaaaaatcaaatggcttataattgcagggatgaaatgcatatttaagc 21979070  T
Q  127 c 127  Q
    |    
T  21979071 c 21979071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 20072853 - 20072969
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||| ||||||||||||||| ||||||||||| |||| |||    
T  20072853 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacgacctataattacagggatg 20072952  T
Q  111 aaatgcatatgtaagcc 127  Q
    ||| |||||| ||||||    
T  20072953 aaaagcatatttaagcc 20072969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 39181780 - 39181898
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||| ||||||||||||||| ||||||||||| |||| ||     
T  39181780 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacgacctataattacagggatt 39181879  T
Q  111 aaatgcatatgtaagccaa 129  Q
    |||  ||||| ||||||||    
T  39181880 aaaaacatatttaagccaa 39181898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 21978017 - 21978110
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    ||||||||| |  ||||| ||| ||| |||||||||||||||||||| ||||||||||||||||| || |||||| |||| |||||| ||||||    
T  21978017 aaatgattagtaattacaggggcaaagtgggaggattagtaagctcagggatgaaaaatcaaatggcccataattacagggatgaaaagcatat 21978110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 31108338 - 31108430
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    ||||||||||| |||||| || |||||||| | |||||||||| |||||||||||||||||||||  ||||| ||||||| ||||||| |||||    
T  31108338 aaatgattaatatttacagggataaaatggaaagattagtaagttcatggatgaaaaatcaaatg-tctatatttgcagggatgaaatacatat 31108430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 39181173 - 39181057
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||| ||||||||||||||| | | ||||||| |||| |||    
T  39181173 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcttataattacagggatg 39181074  T
Q  111 aaatgcatatgtaagcc 127  Q
    ||| |||||| ||||||    
T  39181073 aaaagcatatttaagcc 39181057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 20072242 - 20072119
Alignment:
Q  6 tggggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcag 105  Q
    |||| ||||||||||| | | ||||||||| |  ||||| ||| ||||||  |||||||||||| ||| ||||||||||||||| | ||||||||| |||    
T  20072242 tgggaagagggacgaactttcaaatgattagtaattacaggggcaaaatgaaaggattagtaagttcagggatgaaaaatcaaacggcctataattacag 20072143  T
Q  106 gaatgaaatgcatatgtaagccaa 129  Q
      |||||| |||||| ||||||||    
T  20072142 agatgaaaagcatatttaagccaa 20072119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 16533009 - 16532900
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| ||||||| |||| ||| ||||||||||||||| | ||||||||| |||| |||    
T  16533009 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattaataagttcagggatgaaaaatcaaacggcctataattacagggatg 16532910  T
Q  111 aaatgcatat 120  Q
    ||| ||||||    
T  16532909 aaaagcatat 16532900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 8673774 - 8673851
Alignment:
Q  43 caagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    |||||| |||||||||| ||||| ||| ||| ||||||||  ||||||| |||||| ||||||| |||||||||||||    
T  8673774 caagggcaaaatgggagaattagcaagttcaaggatgaaatttcaaatggcctatatttgcagggatgaaatgcatat 8673851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 16533609 - 16533726
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| ||||||| |||| |||  |||||||||||||| | |||||||||  ||| |||    
T  16533609 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattaataagttcagagatgaaaaatcaaacggcctataattatagggatg 16533708  T
Q  111 aaatgcatatgtaagcca 128  Q
    ||| |||||| |||||||    
T  16533709 aaaagcatatttaagcca 16533726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 21260965 - 21260886
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcagg 106  Q
    ||||||||||| ||| ||| || ||||||| |||||||||||  ||| ||| ||||| |||||||||||||| |||||||    
T  21260965 aaatgattaatatttgcaatggcaaaatggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagg 21260886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 21972166 - 21972104
Alignment:
Q  50 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaa 113  Q
    |||||||||||||||||||||| | ||||||||||||||||| || |||||| |||| ||||||    
T  21972166 aaaatgggaggattagtaagctga-ggatgaaaaatcaaatggcccataattacagggatgaaa 21972104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 39402148 - 39402210
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaa 89  Q
    ||||||||||| ||| || ||| ||||||||||||||||||||  || |||||||||||||||    
T  39402148 aaatgattaatatttgcaggggcaaaatgggaggattagtaagtccagggatgaaaaatcaaa 39402210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 297285 - 297320
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  297285 ttaagtggggagagggacgaaattttaaatgattaa 297320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 3529144 - 3529179
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  3529144 ttaagtggggagagggacgaaattttaaatgattaa 3529179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 5994015 - 5993980
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  5994015 ttaagtggggagagggacgaaattttaaatgattaa 5993980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6150580 - 6150545
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6150580 ttaagtggggagagggacgaaattttaaatgattaa 6150545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 6758136 - 6758171
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6758136 ttaagtggggagagggacgaaattttaaatgattaa 6758171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 8322530 - 8322495
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8322530 ttaagtggggagagggacgaaattttaaatgattaa 8322495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 8323156 - 8323085
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctata 98  Q
    ||||||||||| | | ||| || ||||||| |||||||||||  ||||||| ||||| ||||||||||||||    
T  8323156 aaatgattaatatcttcaatggcaaaatggaaggattagtaacttcatggacgaaaattcaaatgacctata 8323085  T

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Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 14194725 - 14194760
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14194725 ttaagtggggagagggacgaaattttaaatgattaa 14194760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 14745548 - 14745469
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcagg 106  Q
    ||||||||||| ||| || ||| | | ||| |||||||||||  ||| ||||||||| |||||||||||||| |||||||    
T  14745548 aaatgattaatatttgcaggggcagattggaaggattagtaacttcagggatgaaaattcaaatgacctatatttgcagg 14745469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 18934813 - 18934714
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    |||||| |||| ||| ||| || ||||||  |||||||||||  ||||||| ||||| ||||||||| |||| ||||||| ||||||  ||||| |||||    
T  18934813 aaatgactaatatttgcaatggcaaaatgaaaggattagtaacttcatggacgaaaattcaaatgacttatatttgcagggatgaaagacatatttaagc 18934714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 24547427 - 24547462
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  24547427 ttaagtggggagagggacgaaattttaaatgattaa 24547462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 25253186 - 25253087
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||||| ||| || ||| ||| ||| |||||||||||  ||| ||| ||||| |||||||| ||||| ||||||| ||||||  ||||| |||||    
T  25253186 aaatgattaatatttgcaggggcaaattggaaggattagtaacttcagggacgaaaattcaaatgaactatatttgcagggatgaaagacatatttaagc 25253087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 25316976 - 25316877
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||||| ||| || ||| ||| ||| |||||||||||  ||| ||| ||||| |||||||| ||||| ||||||| ||||||  ||||| |||||    
T  25316976 aaatgattaatatttgcaggggcaaattggaaggattagtaacttcagggacgaaaattcaaatgaactatatttgcagggatgaaagacatatttaagc 25316877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 28269690 - 28269725
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  28269690 ttaagtggggagagggacgaaattttaaatgattaa 28269725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 28771140 - 28771175
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  28771140 ttaagtggggagagggacgaaattttaaatgattaa 28771175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 29646664 - 29646699
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  29646664 ttaagtggggagagggacgaaattttaaatgattaa 29646699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31482673 - 31482708
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31482673 ttaagtggggagagggacgaaattttaaatgattaa 31482708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 32242368 - 32242333
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  32242368 ttaagtggggagagggacgaaattttaaatgattaa 32242333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 35512274 - 35512239
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  35512274 ttaagtggggagagggacgaaattttaaatgattaa 35512239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 35920486 - 35920521
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  35920486 ttaagtggggagagggacgaaattttaaatgattaa 35920521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 38442194 - 38442159
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  38442194 ttaagtggggagagggacgaaattttaaatgattaa 38442159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 38475301 - 38475336
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  38475301 ttaagtggggagagggacgaaattttaaatgattaa 38475336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 39453426 - 39453391
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39453426 ttaagtggggagagggacgaaattttaaatgattaa 39453391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 41930642 - 41930607
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  41930642 ttaagtggggagagggacgaaattttaaatgattaa 41930607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 12990912 - 12990965
Alignment:
Q  60 gattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaa 113  Q
    |||||||||  ||||||| ||||| |||||||||||||| ||||||| ||||||    
T  12990912 gattagtaacttcatggacgaaaattcaaatgacctatatttgcagggatgaaa 12990965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 13064533 - 13064586
Alignment:
Q  60 gattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaa 113  Q
    |||||||||  ||||||| ||||| |||||||||||||| ||||||| ||||||    
T  13064533 gattagtaacttcatggacgaaaattcaaatgacctatatttgcagggatgaaa 13064586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12904880 - 12904840
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaattttt 41  Q
    ||||||||||||||||||||||| |||||| ||||| ||||    
T  12904880 ttaagtggggagagggacgaaattttaaattattaaatttt 12904840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 25253370 - 25253470
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||| | ||| |||||| | | ||| |||||||||||  ||| ||| ||||| |||||||||||||| ||||||| | ||||  ||||| |||||    
T  25253370 aaatgattagtatttgcaagggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaagc 25253469  T
Q  127 c 127  Q
    |    
T  25253470 c 25253470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 25317161 - 25317261
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||| | ||| |||||| | | ||| |||||||||||  ||| ||| ||||| |||||||||||||| ||||||| | ||||  ||||| |||||    
T  25317161 aaatgattagtatttgcaagggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaagc 25317260  T
Q  127 c 127  Q
    |    
T  25317261 c 25317261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 32052508 - 32052608
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||||| ||| || ||| | | ||| |||||||||||  ||| ||| ||||| |||||||||||||| ||||||| | ||||  ||||| |||||    
T  32052508 aaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaagc 32052607  T
Q  127 c 127  Q
    |    
T  32052608 c 32052608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 32717079 - 32717205
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataat 100  Q
    |||| |||| ||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||| | | ||||||||||||||||||||||||||    
T  32717079 ttaattgggaagagggacgaaattttaaatgattaatttttacaggggcaaaatggaaggattagtaagtttagggatgaaaaatcaaatgacctataat 32717178  T
Q  101 tgcaggaatgaaatgcatatgtaagcc 127  Q
    | |||| ||||||||||||| ||||||    
T  32717179 tacagggatgaaatgcatatttaagcc 32717205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 29192977 - 29193093
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    |||||||| |||| |||||| ||||||||||||| |||  ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||    
T  29192977 agagggacaaaattttaaataattaatttttacaggggcgaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattacagggatg 29193076  T
Q  111 aaatgcatatgtaagcc 127  Q
    |||||||||| ||||||    
T  29193077 aaatgcatatttaagcc 29193093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 29192151 - 29192042
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||||| |||||||||||||||||||| ||| |||| || |||||||||||||||| | ||||||||||||||| ||||||||| |||| |||    
T  29192151 agagggacgaaattttaaatgattaatttttacaggggcaaaacggaaggattagtaagctcaggaatgaaaaatcaaatggcctataattacagggatg 29192052  T
Q  111 aaatgcatat 120  Q
    ||||||||||    
T  29192051 aaatgcatat 29192042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 37249319 - 37249206
Alignment:
Q  7 ggggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcagg 106  Q
    ||||||||||||||| | | ||||||||| |  ||||| ||| ||||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||    
T  37249319 ggggagagggacgaactttcaaatgattagtaattacaggggcaaaatgggaggattaataagctcagggatgaaaaatcaaacggcctataattgcagg 37249220  T
Q  107 aatgaaatgcatat 120  Q
     |||||| ||||||    
T  37249219 gatgaaaagcatat 37249206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 22736690 - 22736790
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||| |  ||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||  ||||| |||||    
T  22736690 aaatgattagtaattacaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatgacctataattacagggatgaaaaacatatttaagc 22736789  T
Q  127 c 127  Q
    |    
T  22736790 c 22736790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 32716365 - 32716285
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatg 91  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||||||||||    
T  32716365 agagggacgaaattttaaatggttaatttttacaagggtaaaatgagaggattagtaaactcaaggataaaaaatcaaatg 32716285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 2944029 - 2943913
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaat- 109  Q
    ||||||||||| | | |||||||||| ||||||| ||| ||||| |||||||||||||||||| ||||||||||||||| | |||||||||||||| ||     
T  2944029 agagggacgaactttcaaatgattaacttttacaggggcaaaataggaggattagtaagctca-ggatgaaaaatcaaacggcctataattgcagggata 2943931  T
Q  110 gaaatgcatatgtaagcc 127  Q
    |||| |||||| ||||||    
T  2943930 gaaaagcatatttaagcc 2943913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 37249782 - 37249890
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||||||| | |||||||||||||||||||||| ||||||||||||||| | |||||||||||||| |||    
T  37249782 agagggacgaactttcaaatgattagtaattacaagggcagaatgggaggattagtaagctcagggatgaaaaatcaaacggcctataattgcagg-atg 37249880  T
Q  111 aaatgcatat 120  Q
    ||| ||||||    
T  37249881 aaaagcatat 37249890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 44481953 - 44482046
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    ||||||||| |  ||||| ||| |||||||||||||||||||||||||||||||||||||||||| || |||||| |||| |||||| ||||||    
T  44481953 aaatgattagtaattacaggggcaaaatgggaggattagtaagctcatggatgaaaaatcaaatggcccataattacagggatgaaaagcatat 44482046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 45279268 - 45279386
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||| ||||||||||||||| | ||||||||| |||| |||    
T  45279268 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatg 45279367  T
Q  111 aaatgcatatgtaagccaa 129  Q
    ||| |||||| ||||||||    
T  45279368 aaaagcatatttaagccaa 45279386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 48189083 - 48189199
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||||||| ||||||||||||||| | ||||||||| || | |||    
T  48189083 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagctcagggatgaaaaatcaaacggcctataattacaaggatg 48189182  T
Q  111 aaatgcatatgtaagcc 127  Q
    ||| |||||| ||||||    
T  48189183 aaaagcatatttaagcc 48189199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 11026616 - 11026734
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||| ||||| ||| ||||||||||||||| | ||||||||| |||| |||    
T  11026616 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattggtaagttcagggatgaaaaatcaaacggcctataattacagggatg 11026715  T
Q  111 aaatgcatatgtaagccaa 129  Q
    ||| |||||| ||||||||    
T  11026716 aaaagcatatttaagccaa 11026734  T

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Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 1757304 - 1757404
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||| |  ||||| ||| ||||||| |||||||||||| ||||||||||||||||||| | ||||||||| |||| ||||||  ||||| |||||    
T  1757304 aaatgattagtaattacaggggcaaaatggaaggattagtaagttcatggatgaaaaatcaaacggcctataattacagggatgaaaatcatatttaagc 1757403  T
Q  127 c 127  Q
    |    
T  1757404 c 1757404  T

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Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 2944650 - 2944766
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| |||||||  ||||||||||| ||| ||||||||||||||| | ||||||||| |||| |||    
T  2944650 agagggacgaactttcaaatgattagtaattacaggggcaaaatggatggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatg 2944749  T
Q  111 aaatgcatatgtaagcc 127  Q
    ||| |||||| ||||||    
T  2944750 aaaagcatatttaagcc 2944766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 1756666 - 1756576
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataatt 101  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||||||||||||||||||| | |||||||||    
T  1756666 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcatggatgaaaaatcaaacggcctataatt 1756576  T

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Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 48188494 - 48188392
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||| ||||||||||||||| | ||||||||| |||| |||    
T  48188494 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatg 48188395  T
Q  111 aaa 113  Q
    |||    
T  48188394 aaa 48188392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 45278660 - 45278551
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||  ||| ||||||||||||||| | ||||||||| |||| |||    
T  45278660 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaaattcagggatgaaaaatcaaacggcctataattacagggatg 45278561  T
Q  111 aaatgcatat 120  Q
    ||| ||||||    
T  45278560 aaaagcatat 45278551  T

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Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 44476126 - 44476063
Alignment:
Q  50 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaa 113  Q
    |||||||||||||||||||| ||| ||||||||||||||||| || |||||| |||| ||||||    
T  44476126 aaaatgggaggattagtaagttcagggatgaaaaatcaaatggcccataattacagggatgaaa 44476063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 43105818 - 43105920
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||  |||||||||||| ||| ||||||||||||||| | ||||||||| |||| |||    
T  43105818 agagggacgaactttcaaatgattagtaattacaggggcaaaatgaaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatg 43105917  T
Q  111 aaa 113  Q
    |||    
T  43105918 aaa 43105920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 21255815 - 21255901
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaa 113  Q
    ||||||||||| ||||||| || ||||||| || ||||||||  | ||||| ||||| |||||||| ||||| ||||||||| ||||    
T  21255815 aaatgattaatatttacaatggcaaaatggaagcattagtaactttatggacgaaaattcaaatgatctatatttgcaggaacgaaa 21255901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 1741487 - 1741387
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||||| ||| |||||| | | ||| |||||||||||  ||| ||| ||||| |||||||||||||| ||||||| | ||||  ||||| |||||    
T  1741487 aaatgattaatatttgcaagggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaagc 1741388  T
Q  127 c 127  Q
    |    
T  1741387 c 1741387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 33689681 - 33689745
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattag 65  Q
    ||||||||||||||||||||||| |||||||||||| |  | |||||||||| ||  ||||||||    
T  33689681 ttaagtggggagagggacgaaattttaaatgattaaataatgcaagggtaaattgccaggattag 33689745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 2796305 - 2796270
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  2796305 ttaagtggggagagggacgaaattttaaatgattaa 2796270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 8041742 - 8041707
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8041742 ttaagtggggagagggacgaaattttaaatgattaa 8041707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9294260 - 9294295
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9294260 ttaagtggggagagggacgaaattttaaatgattaa 9294295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 10770762 - 10770797
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  10770762 ttaagtggggagagggacgaaattttaaatgattaa 10770797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 23458281 - 23458316
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  23458281 ttaagtggggagagggacgaaattttaaatgattaa 23458316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 26463900 - 26463935
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  26463900 ttaagtggggagagggacgaaattttaaatgattaa 26463935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 36314569 - 36314604
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  36314569 ttaagtggggagagggacgaaattttaaatgattaa 36314604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 40758270 - 40758235
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  40758270 ttaagtggggagagggacgaaattttaaatgattaa 40758235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 48322648 - 48322683
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  48322648 ttaagtggggagagggacgaaattttaaatgattaa 48322683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 51994188 - 51994223
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  51994188 ttaagtggggagagggacgaaattttaaatgattaa 51994223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 54466549 - 54466514
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  54466549 ttaagtggggagagggacgaaattttaaatgattaa 54466514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 21300393 - 21300340
Alignment:
Q  60 gattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaa 113  Q
    |||||||||  ||| ||||||||| |||||||||||||| ||||||| ||||||    
T  21300393 gattagtaacttcagggatgaaaattcaaatgacctatatttgcagggatgaaa 21300340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 43105320 - 43105259
Alignment:
Q  40 ttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataatt 101  Q
    ||||| ||| ||||||  |||||||||||| ||| ||||||||||||||| | |||||||||    
T  43105320 ttacaggggcaaaatgaaaggattagtaagttcagggatgaaaaatcaaacggcctataatt 43105259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 46670537 - 46670610
Alignment:
Q  25 ttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctata 98  Q
    ||||||||||||| ||| ||| |  ||||||| || ||||||||  ||| ||||||||| ||||||||||||||    
T  46670537 ttaaatgattaatatttgcaatgacaaaatggaagaattagtaacttcagggatgaaaattcaaatgacctata 46670610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 55036771 - 55036690
Alignment:
Q  25 ttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcagg 106  Q
    ||||||||||||| ||| || ||| | | ||| |||||||||||  ||| | ||||||| |||||||||||||| |||||||    
T  55036771 ttaaatgattaatatttgcaggggcagattggaaggattagtaacttcaggaatgaaaattcaaatgacctatatttgcagg 55036690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 22735459 - 22735403
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaa 83  Q
    ||||||||| |  ||||| ||| |||||||||||||||||||||| | |||||||||    
T  22735459 aaatgattagtaattacaggggcaaaatgggaggattagtaagcttagggatgaaaa 22735403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 23455673 - 23455789
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||||| | ||||||||||||||||||  || |||||||||||||||||||||||| | ||||||||||||||||||||||||| |||| |||    
T  23455673 agagggacgaaatttgaaatgattaatttttacagtggcaaaatgggaggattagtaagctcaggaatgaaaaatcaaatgacctataattacagggatg 23455772  T
Q  111 aaatgcatatgtaagcc 127  Q
    |||||||||| ||||||    
T  23455773 aaatgcatatttaagcc 23455789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 23455070 - 23454954
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||| ||| |||||||  ||||||||||| ||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |||| |||    
T  23455070 agagggacggaattttaaatgggtaatttttacaggggcaaaatgggatgattagtaagctcagggatgaaaaatcaaatggcctataattacagggatg 23454971  T
Q  111 aaatgcatatgtaagcc 127  Q
    |||||||||| ||||||    
T  23454970 aaatgcatatttaagcc 23454954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 38982576 - 38982689
Alignment:
Q  7 ggggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcagg 106  Q
    ||||||||||||||| | | ||||||||| |  ||||| ||| |||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  38982576 ggggagagggacgaactttcaaatgattagtaattacaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaacggcctataattgcagg 38982675  T
Q  107 aatgaaatgcatat 120  Q
     |||||| ||||||    
T  38982676 gatgaaaagcatat 38982689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 53477080 - 53477180
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||||| ||| || ||| |||||||||||||||||||| |||  ||||||||||||||||||||||||||||||  ||||||||||||| |||||    
T  53477080 aaatgattaatatttgcaggggcaaaatgggaggattagtaagttcagagatgaaaaatcaaatgacctataattgcagagatgaaatgcatatttaagc 53477179  T
Q  127 c 127  Q
    |    
T  53477180 c 53477180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 129
Target Start/End: Original strand, 54591587 - 54591680
Alignment:
Q  36 atttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagccaa 129  Q
    |||||| || ||| ||||||||||| |||||||| ||| |||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||    
T  54591587 atttttgcaggggcaaaatgggaggtttagtaagttcagggatgaaaaatcaaatgatctataattgcagggatgaaatgcatatttaagccaa 54591680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 56556698 - 56556582
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||||||||||||||||||| | ||||||||| |||| |||    
T  56556698 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcatggatgaaaaatcaaacggcctataattacagggatg 56556599  T
Q  111 aaatgcatatgtaagcc 127  Q
    ||| |||||| ||||||    
T  56556598 aaaagcatatttaagcc 56556582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 13336863 - 13336938
Alignment:
Q  52 aatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagcc 127  Q
    |||||||||||||||||| ||| ||||||||  |||||||||||||| ||||||| ||||||||||||| ||||||    
T  13336863 aatgggaggattagtaagttcagggatgaaatttcaaatgacctatatttgcagggatgaaatgcatatttaagcc 13336938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 56557309 - 56557424
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||||||||||||||||||| | |||||||||  ||| |||    
T  56557309 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcatggatgaaaaatcaaacggcctataattagagggatg 56557408  T
Q  111 aaatgcatatgtaagc 126  Q
    ||| |||||| |||||    
T  56557409 aaaagcatatttaagc 56557424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 38813670 - 38813552
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | |||| |||| |  ||||| ||| ||||||| |||||||||||| ||| ||||||||||||||| | ||||||||| |||| |||    
T  38813670 agagggacgaactttcaaattattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatg 38813571  T
Q  111 aaatgcatatgtaagccaa 129  Q
    ||| |||||| ||||||||    
T  38813570 aaaagcatatttaagccaa 38813552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 54590220 - 54590150
Alignment:
Q  50 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    ||||||| || ||||||||| |||  ||||||||||||||||||||||||||||||| |||||||||||||    
T  54590220 aaaatggaagaattagtaagttcaaagatgaaaaatcaaatgacctataattgcagggatgaaatgcatat 54590150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 22882352 - 22882420
Alignment:
Q  52 aatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    ||||||||||||| |||| ||| ||||||||  |||||||||||||| ||||||| |||||||||||||    
T  22882352 aatgggaggattattaagttcagggatgaaatttcaaatgacctatatttgcagggatgaaatgcatat 22882420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 22934016 - 22934084
Alignment:
Q  52 aatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    ||||||||||||| |||| ||| ||||||||  |||||||||||||| ||||||| |||||||||||||    
T  22934016 aatgggaggattattaagttcagggatgaaatttcaaatgacctatatttgcagggatgaaatgcatat 22934084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 38814311 - 38814427
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||| ||||||||||||||| | |||| |||| || | |||    
T  38814311 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctaaaattacaaggatg 38814410  T
Q  111 aaatgcatatgtaagcc 127  Q
    ||| |||||| ||||||    
T  38814411 aaaagcatatttaagcc 38814427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 52816407 - 52816523
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| |||  |||||||||||||| | ||||||||| |||| |||    
T  52816407 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagagatgaaaaatcaaacggcctataattacagggatg 52816506  T
Q  111 aaatgcatatgtaagcc 127  Q
    |||  ||||| ||||||    
T  52816507 aaaatcatatttaagcc 52816523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 55013089 - 55013188
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||| |  ||||| ||| ||| |||||||||||||||||||| ||||||||||||||||  ||||||||| || | |||||| |||||| |||||    
T  55013089 aaatgattagtaattacaggggcaaactgggaggattagtaagctca-ggatgaaaaatcaaatagcctataattacatggatgaaaagcatatttaagc 55013187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 4982997 - 4983061
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattag 65  Q
    ||||||||||||||||||||||| |||||||||||||  || ||||| |||| || |||||||||    
T  4982997 ttaagtggggagagggacgaaattttaaatgattaataattgcaaggctaaattgcgaggattag 4983061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 52815779 - 52815663
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | || |||||| |  ||||| ||| ||||||  |||||||||||| ||| |||| |||||||||| | ||||||||| |||| |||    
T  52815779 agagggacgaactttcaagtgattagtaattacaggggcaaaatgaaaggattagtaagttcagggataaaaaatcaaacggcctataattacagggatg 52815680  T
Q  111 aaatgcatatgtaagcc 127  Q
    ||| |||||| ||||||    
T  52815679 aaaagcatatttaagcc 52815663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 9254476 - 9254413
Alignment:
Q  57 gaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    ||||||||||||| ||| ||||||||  ||||||| |||||| ||||||| |||||||||||||    
T  9254476 gaggattagtaagttcaaggatgaaatttcaaatggcctatatttgcagggatgaaatgcatat 9254413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 14801862 - 14801798
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattag 65  Q
    ||||||||||||||||||||||| ||||||||||||    |||||||||||| ||  ||||||||    
T  14801862 ttaagtggggagagggacgaaattttaaatgattaaacaatacaagggtaaattgtcaggattag 14801798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9145037 - 9145072
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9145037 ttaagtggggagagggacgaaattttaaatgattaa 9145072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 13058163 - 13058128
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  13058163 ttaagtggggagagggacgaaattttaaatgattaa 13058128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 23613435 - 23613400
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  23613435 ttaagtggggagagggacgaaattttaaatgattaa 23613400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 24711237 - 24711202
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  24711237 ttaagtggggagagggacgaaattttaaatgattaa 24711202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 27934658 - 27934623
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  27934658 ttaagtggggagagggacgaaattttaaatgattaa 27934623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 34765682 - 34765717
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  34765682 ttaagtggggagagggacgaaattttaaatgattaa 34765717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 36009115 - 36009150
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  36009115 ttaagtggggagagggacgaaattttaaatgattaa 36009150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 42738302 - 42738337
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  42738302 ttaagtggggagagggacgaaattttaaatgattaa 42738337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 43155798 - 43155833
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  43155798 ttaagtggggagagggacgaaattttaaatgattaa 43155833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 44967340 - 44967375
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  44967340 ttaagtggggagagggacgaaattttaaatgattaa 44967375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 49879478 - 49879513
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  49879478 ttaagtggggagagggacgaaattttaaatgattaa 49879513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 50246173 - 50246228
Alignment:
Q  58 aggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaa 113  Q
    |||||||||||  ||||||| ||||| |||||||||||||| ||||||| ||||||    
T  50246173 aggattagtaacttcatggacgaaaattcaaatgacctatatttgcagggatgaaa 50246228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 50418939 - 50418974
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  50418939 ttaagtggggagagggacgaaattttaaatgattaa 50418974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 22249993 - 22249940
Alignment:
Q  60 gattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaa 113  Q
    |||||||||  ||| ||||||||| |||||||||||||| ||||||| ||||||    
T  22249993 gattagtaacttcagggatgaaaattcaaatgacctatatttgcagggatgaaa 22249940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10781786 - 10781822
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaat 37  Q
    |||| |||||||||||||||||| |||||||||||||    
T  10781786 ttaactggggagagggacgaaattttaaatgattaat 10781822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16605728 - 16605692
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaat 37  Q
    |||||||||| |||||||||||| |||||||||||||    
T  16605728 ttaagtggggggagggacgaaattttaaatgattaat 16605692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 17356224 - 17356256
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgat 33  Q
    ||||||||||||||||||||||| |||||||||    
T  17356224 ttaagtggggagagggacgaaattttaaatgat 17356256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24349800 - 24349764
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaat 37  Q
    |||| |||||||||||||||||| |||||||||||||    
T  24349800 ttaactggggagagggacgaaattttaaatgattaat 24349764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 52298152 - 52298112
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaattttt 41  Q
    |||||||||||||| |||||||| |||||||||||| ||||    
T  52298152 ttaagtggggagagagacgaaattttaaatgattaaatttt 52298112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 43)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 1231626 - 1231527
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||||||||||| |||||    
T  1231626 aaatgattaatttttacaggggtaaaatgggaggattagtaagctcatggatgaaaaatcaaagggcctataattgtagggatgaaatgcatatttaagc 1231527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 34213880 - 34213764
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | |||||||||| ||||||| ||| ||||| |||||||||||||||||| ||||||||||||||| | |||||||||||||| |||    
T  34213880 agagggacgaactttcaaatgattaacttttacaggggcaaaataggaggattagtaagctcagggatgaaaaatcaaacggcctataattgcagggatg 34213781  T
Q  111 aaatgcatatgtaagcc 127  Q
    ||| |||||| ||||||    
T  34213780 aaaagcatatttaagcc 34213764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 7393145 - 7393233
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatg 115  Q
    ||||||||||| ||| || || ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||    
T  7393145 aaatgattaatatttgcagggataaaatgggaggattagtaagttcagggatgaaaaatcaaatgacctataattgcagggatgaaatg 7393233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 25288076 - 25288176
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||||| ||| || ||| |||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||  ||||||||||||| |||||    
T  25288076 aaatgattaatatttgcaggggcaaaatgagaggattagtaagttcagggatgaaaaatcaaatgacctataattgcagtgatgaaatgcatatttaagc 25288175  T
Q  127 c 127  Q
    |    
T  25288176 c 25288176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 38599064 - 38598964
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||||| ||| || ||| |||||| ||||||||||||| ||| ||||||||||||||||| |||||||||||||| ||||||||||||| |||||    
T  38599064 aaatgattaatatttgcaggggcaaaatgagaggattagtaagttcagggatgaaaaatcaaatggcctataattgcagggatgaaatgcatatttaagc 38598965  T
Q  127 c 127  Q
    |    
T  38598964 c 38598964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 33497639 - 33497716
Alignment:
Q  50 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagcc 127  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| |||||| ||||||    
T  33497639 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgccctataattacagggatgaaaagcatatttaagcc 33497716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 1232799 - 1232897
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    |||||||||||||||||| ||| |||||||||||||    ||||||| ||||||||||||||||| ||||||||| |||| ||||||||||||| |||||    
T  1232799 aaatgattaatttttacaggggcaaaatgggaggatac--aagctcagggatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagc 1232896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 34665886 - 34665770
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||| ||||||||||||||| | ||||||||| |||| |||    
T  34665886 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatg 34665787  T
Q  111 aaatgcatatgtaagcc 127  Q
    ||| |||||| ||||||    
T  34665786 aaaagcatatttaagcc 34665770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 24377281 - 24377179
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||| ||||| ||| || ||| |||||||||||||||||||| ||| ||||||||  ||||||||||  |||||||| ||||||||||||||| | |||    
T  24377281 aaatgcttaatatttgcaggggaaaaatgggaggattagtaagttcagggatgaaacttcaaatgacccctaattgcaagaatgaaatgcatattttagc 24377182  T
Q  127 caa 129  Q
    |||    
T  24377181 caa 24377179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 24379019 - 24379089
Alignment:
Q  50 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    ||||| |||||||||||||| ||| |||||||| |||||||||||  |||||||||| |||||||||||||    
T  24379019 aaaataggaggattagtaagttcaaggatgaaatatcaaatgacccctaattgcagggatgaaatgcatat 24379089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 33497100 - 33497030
Alignment:
Q  43 caagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaa 113  Q
    |||||| ||||||| |||||||||||| ||| | ||||||||||||||||||||||||| || ||||||||    
T  33497100 caagggcaaaatggaaggattagtaagttcaagaatgaaaaatcaaatgacctataattacatgaatgaaa 33497030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 4970225 - 4970132
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    ||||| ||||| ||| || ||| ||||||| |||||||||||| ||| ||||||||  ||||||||||  |||||||||| |||||||||||||    
T  4970225 aaatgcttaatatttgcaggggcaaaatggaaggattagtaagttcagggatgaaatttcaaatgacccctaattgcagggatgaaatgcatat 4970132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 34214512 - 34214629
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggat-gaaaaatcaaatgacctataattgcaggaat 109  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||| |||| ||||||||||| | ||||||||| |||| ||    
T  34214512 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggattgaaaaatcaaacggcctataattacagggat 34214611  T
Q  110 gaaatgcatatgtaagcc 127  Q
    |||| |||||| ||||||    
T  34214612 gaaaagcatatttaagcc 34214629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 4463455 - 4463526
Alignment:
Q  56 ggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagcc 127  Q
    |||||||||||||| ||| ||||||||  ||||||| |||||| ||||||| ||||||||||||| ||||||    
T  4463455 ggaggattagtaagttcagggatgaaatttcaaatggcctatacttgcagggatgaaatgcatatttaagcc 4463526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 29574819 - 29574749
Alignment:
Q  50 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    ||||||| |||||||||||| | | ||||||||  |||||||||||||| ||||||| |||||||||||||    
T  29574819 aaaatggaaggattagtaagtttagggatgaaatttcaaatgacctatatttgcagggatgaaatgcatat 29574749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 7392308 - 7392250
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaat 85  Q
    ||||||||||| ||| || || ||||||||||||||||||||| ||| |||||||||||    
T  7392308 aaatgattaatatttgcagggataaaatgggaggattagtaagttcagggatgaaaaat 7392250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 27436630 - 27436560
Alignment:
Q  60 gattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagccaat 130  Q
    |||||||||  ||| ||| ||||| ||||| |||||||| ||||||| ||||||||||||| |||||||||    
T  27436630 gattagtaacttcagggacgaaaattcaaacgacctatatttgcagggatgaaatgcatatttaagccaat 27436560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 34666525 - 34666614
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataatt 101  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||| ||||||||||||||| | |||||||||    
T  34666525 agagggacgaactttcaaatgattagtaattaca-gggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataatt 34666614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 1425324 - 1425359
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  1425324 ttaagtggggagagggacgaaattttaaatgattaa 1425359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 3041727 - 3041762
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  3041727 ttaagtggggagagggacgaaattttaaatgattaa 3041762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 16388828 - 16388863
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  16388828 ttaagtggggagagggacgaaattttaaatgattaa 16388863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 23663816 - 23663851
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  23663816 ttaagtggggagagggacgaaattttaaatgattaa 23663851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 23698546 - 23698581
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  23698546 ttaagtggggagagggacgaaattttaaatgattaa 23698581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 35756708 - 35756673
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  35756708 ttaagtggggagagggacgaaattttaaatgattaa 35756673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 36325360 - 36325325
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  36325360 ttaagtggggagagggacgaaattttaaatgattaa 36325325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 36928602 - 36928567
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  36928602 ttaagtggggagagggacgaaattttaaatgattaa 36928567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 38845570 - 38845605
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  38845570 ttaagtggggagagggacgaaattttaaatgattaa 38845605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 38862744 - 38862709
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  38862744 ttaagtggggagagggacgaaattttaaatgattaa 38862709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 39071802 - 39071767
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39071802 ttaagtggggagagggacgaaattttaaatgattaa 39071767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 40775921 - 40775956
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  40775921 ttaagtggggagagggacgaaattttaaatgattaa 40775956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 44407128 - 44407163
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  44407128 ttaagtggggagagggacgaaattttaaatgattaa 44407163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 31608815 - 31608849
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgatta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  31608815 ttaagtggggagagggacgaaattttaaatgatta 31608849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 36574890 - 36574824
Alignment:
Q  54 tgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    |||||||||||||||| ||| ||||||||  ||||||| ||||||  |||||  |||||||||||||    
T  36574890 tgggaggattagtaagttcagggatgaaatttcaaatgccctatatatgcagagatgaaatgcatat 36574824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 547695 - 547642
Alignment:
Q  60 gattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaa 113  Q
    |||||||||  ||| ||| ||||| |||||||||||||||||||||| ||||||    
T  547695 gattagtaacttcaaggacgaaaattcaaatgacctataattgcagggatgaaa 547642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 9632428 - 9632351
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgca 104  Q
    ||||||||||| ||| ||| |  ||||||| |||||||||||  ||| ||| ||||| |||||||||||||| |||||    
T  9632428 aaatgattaatatttgcaatgacaaaatggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgca 9632351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 27437552 - 27437621
Alignment:
Q  60 gattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagccaa 129  Q
    |||||||||  ||| ||| ||||| ||||| | |||||| ||||||| ||||||||||||| ||||||||    
T  27437552 gattagtaacttcagggacgaaaattcaaacggcctatatttgcagggatgaaatgcatatttaagccaa 27437621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 36623613 - 36623560
Alignment:
Q  60 gattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaa 113  Q
    |||||||||  ||| ||||||||| |||||||||||||| ||||||| ||||||    
T  36623613 gattagtaacttcagggatgaaaattcaaatgacctatatttgcagggatgaaa 36623560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 37343042 - 37342989
Alignment:
Q  60 gattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaa 113  Q
    |||||||||  ||| ||||||||| |||||||||||||| ||||||| ||||||    
T  37343042 gattagtaacttcagggatgaaaattcaaatgacctatatttgcagggatgaaa 37342989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 43866835 - 43866888
Alignment:
Q  60 gattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaa 113  Q
    |||||||||  ||| ||||||||| |||||||||||||| ||||||| ||||||    
T  43866835 gattagtaacttcagggatgaaaattcaaatgacctatatttgcagggatgaaa 43866888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12199221 - 12199257
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaat 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  12199221 ttaagtggggagagagacgaaattttaaatgattaat 12199257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12443649 - 12443685
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaat 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  12443649 ttaagtggggagagagacgaaattttaaatgattaat 12443685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 26740033 - 26740081
Alignment:
Q  58 aggattagtaagctcatggatgaaaaatcaaatgacctataattgcagg 106  Q
    |||||||||||  ||||||| ||||| |||||||||||||| |||||||    
T  26740033 aggattagtaacttcatggacgaaaattcaaatgacctatatttgcagg 26740081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 29575910 - 29575978
Alignment:
Q  52 aatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    |||||||||||||||||  | | ||||||||  |||||||  ||||| ||||||| |||||||||||||    
T  29575910 aatgggaggattagtaaatttagggatgaaatttcaaatggactatatttgcagggatgaaatgcatat 29575978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 261101 - 261001
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||||| ||| || ||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  261101 aaatgattaatatttgcaggggcaaaatgggaggattagtaaattcatggatgaaaaatcaaatgacctataattgcagggatgaaatgcatatttaagc 261002  T
Q  127 c 127  Q
    |    
T  261001 c 261001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 262439 - 262541
Alignment:
Q  25 ttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaa 124  Q
    ||||||||||||| ||| || ||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||||||||||||| |||    
T  262439 ttaaatgattaatatttgcaggggaaaaatgggaggattagtaagttcagggatgaaaaatcaaatgacctataattacagggatgaaatgcatatttaa 262538  T
Q  125 gcc 127  Q
    |||    
T  262539 gcc 262541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1493 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold1493
Description:

Target: scaffold1493; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 693 - 593
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||||| ||| || ||| |||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||  ||||||||||||| |||||    
T  693 aaatgattaatatttgcaggggcaaaatgagaggattagtaagttcagggatgaaaaatcaaatgacctataattgcagtgatgaaatgcatatttaagc 594  T
Q  127 c 127  Q
    |    
T  593 c 593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 4116915 - 4116799
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | |||||||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||||||| | ||||||||| |||| |||    
T  4116915 agagggacgaattttcaaatgattaacttttacaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaacggcctataattacagggatg 4116816  T
Q  111 aaatgcatatgtaagcc 127  Q
    |||  ||||| ||||||    
T  4116815 aaaaacatatttaagcc 4116799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 4117531 - 4117647
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | |||||||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||||||| | ||||||||| |||| |||    
T  4117531 agagggacgaattttcaaatgattaacttttacaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaacggcctataattacagggatg 4117630  T
Q  111 aaatgcatatgtaagcc 127  Q
    |||  ||||| ||||||    
T  4117631 aaaaacatatttaagcc 4117647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 14656596 - 14656480
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | |||||||||| ||||||| ||| ||||| |||||||||||||||||| |||||||||||||||   |||||||||||||| |||    
T  14656596 agagggacgaactttcaaatgattaacttttacaggggcaaaataggaggattagtaagctcagggatgaaaaatcaaacagcctataattgcagggatg 14656497  T
Q  111 aaatgcatatgtaagcc 127  Q
    ||| |||||| ||||||    
T  14656496 aaaagcatatttaagcc 14656480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 17784385 - 17784485
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||||| ||| || ||| |||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| |||||| |||||| |||||    
T  17784385 aaatgattaatatttgcaggggcaaaatgggaggattagtaagttcatggatgaaaaatcaaatggcctatcattgcagggatgaaaagcatatttaagc 17784484  T
Q  127 c 127  Q
    |    
T  17784485 c 17784485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 33401126 - 33401226
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    |||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||||||||| | |||||||||||||| |||||| |||||| |||||    
T  33401126 aaatgattaacttttacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaacggcctataattgcagggatgaaaagcatatttaagc 33401225  T
Q  127 c 127  Q
    |    
T  33401226 c 33401226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 8427388 - 8427458
Alignment:
Q  50 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatat 120  Q
    ||||||||||||||||||||  || |||||||||||||||||||||||||||||||| |||||||||||||    
T  8427388 aaaatgggaggattagtaagtccagggatgaaaaatcaaatgacctataattgcagggatgaaatgcatat 8427458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 33400082 - 33399964
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||| ||||||||||||||| | ||||||||| |||| |||    
T  33400082 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatg 33399983  T
Q  111 aaatgcatatgtaagccaa 129  Q
    ||| |||||| ||||||||    
T  33399982 aaaagcatatttaagccaa 33399964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 1661414 - 1661516
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||||||||||| |||||||||||| ||| ||||||||||||||| | ||||||||| |||| |||    
T  1661414 agagggacgaactttcaaatgattagtaattacaggggtaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatg 1661513  T
Q  111 aaa 113  Q
    |||    
T  1661514 aaa 1661516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 14657193 - 14657309
Alignment:
Q  11 agagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatg 110  Q
    ||||||||||| | | ||||||||| |  ||||| ||| ||||||| |||||||||||| ||| |||| |||||||||| | |||||||||  ||| |||    
T  14657193 agagggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaaggtcagggataaaaaatcaaacggcctataattatagggatg 14657292  T
Q  111 aaatgcatatgtaagcc 127  Q
    ||| |||||| ||||||    
T  14657293 aaaagcatatttaagcc 14657309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 738012 - 738084
Alignment:
Q  58 aggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagccaat 130  Q
    |||||||||||  ||||||| ||||| |||||||||||||| ||||||| | ||||  ||||| |||||||||    
T  738012 aggattagtaacttcatggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaagccaat 738084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 8427297 - 8427197
Alignment:
Q  30 tgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagccaa 129  Q
    |||||||| ||| || ||| |||||||||||||||||||  | |  || ||||| |||||||||||||| ||||| | ||||||  ||||| ||||||||    
T  8427297 tgattaatatttgcaggggcaaaatgggaggattagtaacttgagagacgaaaattcaaatgacctatatttgcaaggatgaaagacatatttaagccaa 8427198  T
Q  130 t 130  Q
    |    
T  8427197 t 8427197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 15819774 - 15819874
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||| | ||| |||||||| | ||| |||||||||||  ||| ||| ||||| |||||||||||||| ||||||| | ||||  ||||| |||||    
T  15819774 aaatgattagtatttgcaagggtagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaagc 15819873  T
Q  127 c 127  Q
    |    
T  15819874 c 15819874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 3299843 - 3299942
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||||| ||| ||| || | | ||| |||||||||||  ||| ||| ||||| |||||||||||||| ||||||| | ||||| ||||| |||||    
T  3299843 aaatgattaatatttgcaatggcagattggaaggattagtaacttcaaggacgaaaattcaaatgacctatatttgcagggacgaaatacatatttaagc 3299942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 12080762 - 12080727
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  12080762 ttaagtggggagagggacgaaattttaaatgattaa 12080727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 28000656 - 28000691
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  28000656 ttaagtggggagagggacgaaattttaaatgattaa 28000691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 30337575 - 30337540
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  30337575 ttaagtggggagagggacgaaattttaaatgattaa 30337540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 30803987 - 30803952
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  30803987 ttaagtggggagagggacgaaattttaaatgattaa 30803952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 33517660 - 33517625
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  33517660 ttaagtggggagagggacgaaattttaaatgattaa 33517625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 3299819 - 3299749
Alignment:
Q  60 gattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagccaat 130  Q
    |||||||||  ||||||||||||| |||||||||||||  ||||||| | ||||| | ||| |||||||||    
T  3299819 gattagtaacttcatggatgaaaattcaaatgacctatgtttgcagggacgaaatacctatctaagccaat 3299749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 19296487 - 19296441
Alignment:
Q  60 gattagtaagctcatggatgaaaaatcaaatgacctataattgcagg 106  Q
    |||||||||  ||||||||||||| |||||||||||||| |||||||    
T  19296487 gattagtaacttcatggatgaaaattcaaatgacctatatttgcagg 19296441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 5064435 - 5064335
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||||| ||| || ||| ||| |||||||||||||||  ||| ||| ||||| ||||||||| |||| || |||| | ||||  ||||| |||||    
T  5064435 aaatgattaatatttgcaggggcaaattgggaggattagtaacttcagggacgaaaattcaaatgacttatatttacagggacgaaagacatatttaagc 5064336  T
Q  127 c 127  Q
    |    
T  5064335 c 5064335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 9607631 - 9607679
Alignment:
Q  58 aggattagtaagctcatggatgaaaaatcaaatgacctataattgcagg 106  Q
    |||||||||||  ||||||| ||||| |||||||||||||| |||||||    
T  9607631 aggattagtaacttcatggacgaaaattcaaatgacctatatttgcagg 9607679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 30725885 - 30725821
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattag 65  Q
    |||| |||||||||||||||||| ||||||||||||    | |||||||||| ||| ||||||||    
T  30725885 ttaaatggggagagggacgaaattttaaatgattaaacagtgcaagggtaaattggcaggattag 30725821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 14396 - 14477
Alignment:
Q  46 gggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagcc 127  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||  ||||| |||||| ||||||    
T  14396 gggtaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattacaggggtgaaaagcatatttaagcc 14477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 13211 - 13134
Alignment:
Q  50 aaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagcc 127  Q
    ||||||||||||||| ||| ||||  ||||||||||||||||  ||||| || |||| |||||| |||||| ||||||    
T  13211 aaaatgggaggattactaaactcagagatgaaaaatcaaatggtctatatttacagggatgaaaagcatatttaagcc 13134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 73209 - 73108
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcaggaatgaaatgcatatgtaagc 126  Q
    ||||||||| |  ||||| ||| |||||||||||||||||||||||| ||||||||| ||||||| || |||||| |||| |||||| |||||| |||||    
T  73209 aaatgattagtaattacaggggcaaaatgggaggattagtaagctcagggatgaaaagtcaaatggcccataattacagggatgaaaagcatatttaagc 73110  T
Q  127 ca 128  Q
    ||    
T  73109 ca 73108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 10953 - 10874
Alignment:
Q  27 aaatgattaatttttacaagggtaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattgcagg 106  Q
    ||||||||||| ||| ||| || ||||||| |||||||||||  || |||| ||||| |||||||||||||| |||||||    
T  10953 aaatgattaatatttgcaatggcaaaatggaaggattagtaacttcgtggacgaaaattcaaatgacctatatttgcagg 10874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 139798 - 139762
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaat 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  139798 ttaagtggggagagggacgaaattttaaatgattaat 139762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 37865 - 37929
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaatttttacaagggtaaaatgggaggattag 65  Q
    ||||||||||||||||||||||| ||||||||||||    |||||||||||| ||  ||||||||    
T  37865 ttaagtggggagagggacgaaattttaaatgattaaacaatacaagggtaaattgtcaggattag 37929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0559 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0559
Description:

Target: scaffold0559; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 1359 - 1324
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  1359 ttaagtggggagagggacgaaattttaaatgattaa 1324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 69091 - 69056
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  69091 ttaagtggggagagggacgaaattttaaatgattaa 69056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 141865 - 141900
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  141865 ttaagtggggagagggacgaaattttaaatgattaa 141900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 1895 - 1860
Alignment:
Q  1 ttaagtggggagagggacgaaatcttaaatgattaa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  1895 ttaagtggggagagggacgaaattttaaatgattaa 1860  T

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