View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11298_low_8 (Length: 292)

Name: NF11298_low_8
Description: NF11298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11298_low_8
NF11298_low_8
[»] scaffold0003 (1 HSPs)
scaffold0003 (90-262)||(319085-319257)
[»] chr4 (7 HSPs)
chr4 (107-270)||(15736909-15737072)
chr4 (91-218)||(11449126-11449255)
chr4 (91-218)||(11545499-11545628)
chr4 (90-236)||(17473773-17473921)
chr4 (91-238)||(11419997-11420146)
chr4 (96-192)||(19053534-19053630)
chr4 (96-154)||(12380532-12380590)
[»] chr8 (7 HSPs)
chr8 (90-183)||(12863735-12863828)
chr8 (97-236)||(24122062-24122201)
chr8 (91-212)||(18527798-18527920)
chr8 (137-238)||(28800506-28800607)
chr8 (96-234)||(23584605-23584745)
chr8 (94-262)||(25724338-25724509)
chr8 (102-238)||(24308579-24308717)
[»] chr1 (14 HSPs)
chr1 (90-270)||(31584045-31584227)
chr1 (91-197)||(43282146-43282251)
chr1 (90-203)||(34188108-34188221)
chr1 (131-218)||(17103105-17103193)
chr1 (114-238)||(15440927-15441051)
chr1 (139-238)||(19361744-19361843)
chr1 (139-238)||(19380384-19380483)
chr1 (90-230)||(14580362-14580503)
chr1 (90-262)||(33439172-33439348)
chr1 (165-262)||(30805618-30805717)
chr1 (168-238)||(17087863-17087933)
chr1 (101-155)||(18129680-18129734)
chr1 (94-172)||(41029654-41029732)
chr1 (108-197)||(1812491-1812580)
[»] chr3 (14 HSPs)
chr3 (92-209)||(4244304-4244421)
chr3 (90-238)||(38076041-38076191)
chr3 (90-262)||(17119273-17119449)
chr3 (90-192)||(4514995-4515097)
chr3 (90-238)||(5638344-5638504)
chr3 (90-197)||(9796485-9796592)
chr3 (90-149)||(13291375-13291434)
chr3 (90-259)||(24112849-24113020)
chr3 (92-134)||(20284915-20284957)
chr3 (90-154)||(4253254-4253319)
chr3 (90-134)||(11045001-11045045)
chr3 (90-154)||(14426921-14426985)
chr3 (90-182)||(17034156-17034248)
chr3 (96-234)||(17637190-17637330)
[»] chr2 (7 HSPs)
chr2 (131-269)||(22268925-22269064)
chr2 (90-262)||(18848605-18848780)
chr2 (90-260)||(23959622-23959793)
chr2 (184-262)||(35665922-35666002)
chr2 (96-142)||(12061224-12061270)
chr2 (101-142)||(22272522-22272563)
chr2 (90-263)||(27765332-27765508)
[»] chr7 (8 HSPs)
chr7 (94-271)||(956804-956982)
chr7 (201-271)||(8259601-8259671)
chr7 (90-233)||(27706991-27707136)
chr7 (90-181)||(11608835-11608926)
chr7 (145-234)||(23022373-23022463)
chr7 (102-155)||(11016331-11016384)
chr7 (90-154)||(4031219-4031283)
chr7 (163-238)||(24865676-24865752)
[»] chr6 (6 HSPs)
chr6 (96-232)||(17146223-17146360)
chr6 (90-203)||(26238922-26239035)
chr6 (90-144)||(10821467-10821521)
chr6 (108-197)||(6560556-6560645)
chr6 (101-156)||(12394825-12394880)
chr6 (96-264)||(10814438-10814611)
[»] scaffold0804 (1 HSPs)
scaffold0804 (90-154)||(79-143)


Alignment Details
Target: scaffold0003 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 90 - 262
Target Start/End: Original strand, 319085 - 319257
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagta 189  Q
    |||||||| |||||||||||||||||||||||||| ||| |||||| | |||| ||||||||||  | |||| ||| ||||||  ||||||||||||| |    
T  319085 gtattgaaaaacaattagatatgttaatatgtgttcaagtgtgcaggatcataaattaaaatttgctaagttctgaccatatatgagagcatctgaagca 319184  T
Q  190 caagagaaactaaagacttggtagaagatatgagcaaaggtcaaccagatgttaacttttggatcagaagaaa 262  Q
     || |||| ||||||||||||||||| || |||  |||||||||||||| || ||||||||||||||||||||    
T  319185 taaaagaagctaaagacttggtagaacatctgaagaaaggtcaaccagaagtcaacttttggatcagaagaaa 319257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 107 - 270
Target Start/End: Complemental strand, 15737072 - 15736909
Alignment:
Q  107 gatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagtacaagagaaactaaagac 206  Q
    |||||||||||||||||| ||| |||||  |||||| |||||||| || | |||| |||||||||| || |||||||||||  |||||||| || || ||    
T  15737072 gatatgttaatatgtgttcaagtgtgcaataccatagattaaaatatactaagttatgaacatatataaaagcatctgaagcgcaagagaatctgaatac 15736973  T
Q  207 ttggtagaagatatgagcaaaggtcaaccagatgttaacttttggatcagaagaaaagttgcac 270  Q
    |||||||||||| |||  |||||||||||| | ||||| |||||||| ||||||| ||| ||||    
T  15736972 ttggtagaagatttgaagaaaggtcaaccataagttaatttttggattagaagaagagtagcac 15736909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 218
Target Start/End: Original strand, 11449126 - 11449255
Alignment:
Q  91 tattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagtac 190  Q
    ||||||||||||||| || |||||||||| |||| ||| |||||| |||||||||||||||||| | || | ||||||| || |||||||||  ||| |     
T  11449126 tattgaagaacaattggacatgttaatatatgttcaagtgtgcaggaccatatattaaaatttaataaggtctgaacatgtaaaagagcatcaaaagcat 11449225  T
Q  191 aagagaaactaa-agact-tggtagaagat 218  Q
    ||||||| |||| ||||| |||||||||||    
T  11449226 aagagaagctaatagactatggtagaagat 11449255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 11545628 - 11545499
Alignment:
Q  91 tattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagtac 190  Q
    ||||||| ||||||| || |||||||||| |||| ||| |||||| |||||||||||||||||| | || | ||||||| || |||||||||  |||||     
T  11545628 tattgaaaaacaattggacatgttaatatatgttcaagtgtgcaggaccatatattaaaatttaataaggtctgaacatgtaaaagagcatcaaaagtat 11545529  T
Q  191 aagagaaactaa-agact-tggtagaagat 218  Q
    ||||||| |||| ||||| |||||||||||    
T  11545528 aagagaagctaatagactatggtagaagat 11545499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 17473773 - 17473921
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagta 189  Q
    ||||| ||||| ||||| |||||||||||| |||| ||| |||||| | |||| |||||||||||   || | ||||||| || ||||| ||| |||| |    
T  17473773 gtattaaagaaaaattaaatatgttaatatatgttcaagtgtgcaggaacataaattaaaatttaacaaggtctgaacatgtataagagtatcagaagca 17473872  T
Q  190 caagagaaact-aaagact-tggtagaagatatgagcaaaggtcaacca 236  Q
    ||||||||||| ||||||| ||||||||||| |||  ||||||||||||    
T  17473873 caagagaaactcaaagactatggtagaagatttgaagaaaggtcaacca 17473921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 91 - 238
Target Start/End: Complemental strand, 11420146 - 11419997
Alignment:
Q  91 tattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagtac 190  Q
    |||| |||||||||| |||||| |||||| |||| ||| ||  || ||||||||||||||||||   || | ||||||| || |||| |||| ||||||     
T  11420146 tattaaagaacaattggatatgataatatatgttcaagtgtaaaggaccatatattaaaatttaacaaggtctgaacatgtataagaacatcagaagtag 11420047  T
Q  191 aagagaaact-aaagact-tggtagaagatatgagcaaaggtcaaccaga 238  Q
    ||||||| || ||||||| ||||||||||| |||  ||||||||||||||    
T  11420046 aagagaagctcaaagactatggtagaagatctgaagaaaggtcaaccaga 11419997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 192
Target Start/End: Complemental strand, 19053630 - 19053534
Alignment:
Q  96 aagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagtacaa 192  Q
    ||||||||||||||||| |||||| |||| ||| |||| | |||||| |||||||||||   || | |||| ||||| ||||||||| |||| ||||    
T  19053630 aagaacaattagatatgctaatatatgttcaagtgtgctggaccataaattaaaatttaacaaggtctgaaaatatataagagcatcagaagcacaa 19053534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 12380590 - 12380532
Alignment:
Q  96 aagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaattta 154  Q
    |||||||||| |||||  |||||| |||||||| |||||  ||||||||||||||||||    
T  12380590 aagaacaattggatattctaatatatgtttaagtgtgcatgaccatatattaaaattta 12380532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 12863828 - 12863735
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatct 183  Q
    |||||||| ||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| || | |||||||||| ||||||||||    
T  12863828 gtattgaacaacaattggatatgttaatatgtgtttaagtgtgcaggaccatatattaaaatttattaaggtctgaacatatataagagcatct 12863735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 97 - 236
Target Start/End: Complemental strand, 24122201 - 24122062
Alignment:
Q  97 agaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagtacaagaga 196  Q
    |||| |||| |||||| ||||||||||| ||| |||||| |||||| ||||||||||||  |||| ||||||||||  |||| |||||||| ||||||||    
T  24122201 agaataattggatatgctaatatgtgttcaagtgtgcaggaccatagattaaaatttatcaagttatgaacatatatgagagtatctgaagcacaagaga 24122102  T
Q  197 aactaaagacttggtagaagatatgagcaaaggtcaacca 236  Q
    |  ||||||||| ||||||||| |||  |||||| |||||    
T  24122101 aggtaaagacttagtagaagatttgaagaaaggttaacca 24122062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 18527798 - 18527920
Alignment:
Q  91 tattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagtac 190  Q
    |||| ||||||||||||||||| ||| || |||||||| |||||| | |||| ||||||||||||  || | |||||||||| ||||||||| |||| ||    
T  18527798 tattaaagaacaattagatatgctaaaatatgtttaagtgtgcaggatcatagattaaaatttatcaaggtctgaacatatataagagcatcagaagcac 18527897  T
Q  191 aagagaaact-aaagacttggta 212  Q
    ||||||| || ||||||||||||    
T  18527898 aagagaagctaaaagacttggta 18527920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 28800506 - 28800607
Alignment:
Q  137 accatatattaaaatttattgagttttgaacatatacaagagcatctgaagtacaagagaaactaaagacttggtagaagatatgagcaaaggtcaacca 236  Q
    |||||| |||||||||| |  |||| |||||||||| |||| ||| ||||||||||||||| |||||||||   ||||||||||||  ||||||||||||    
T  28800506 accatagattaaaatttgtcaagttctgaacatatataagatcatttgaagtacaagagaagctaaagactctatagaagatatgaaaaaaggtcaacca 28800605  T
Q  237 ga 238  Q
    ||    
T  28800606 ga 28800607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 23584605 - 23584745
Alignment:
Q  96 aagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagtacaagag 195  Q
    ||||||||||  ||||| |||||| |||| ||| | |||| |||||  ||||||||||| | || ||||||||| || |||||||||  ||| |||||||    
T  23584605 aagaacaattgaatatgctaatatatgttcaagtgcgcaggaccattgattaaaatttaataaggtttgaacatgtataagagcatcataagcacaagag 23584704  T
Q  196 aaact-aaagact-tggtagaagatatgagcaaaggtcaac 234  Q
    ||||| ||||||| ||||||||||| ||| |||||||||||    
T  23584705 aaactcaaagactatggtagaagatctgaacaaaggtcaac 23584745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 262
Target Start/End: Original strand, 25724338 - 25724509
Alignment:
Q  94 tgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagtacaag 193  Q
    |||||||||||| |||||| |||||| |||| ||  |||||| |||||| |||||||||||   || | | ||||| || ||||||||| |||  | |||    
T  25724338 tgaagaacaattggatatgataatatatgttcaactgtgcaggaccataaattaaaatttaacaaggtctaaacatgtataagagcatcagaaacataag 25724437  T
Q  194 agaaact-aaagac-ttggtagaagatatgagcaaaggtcaaccagatgttaac-ttttggatcagaagaaa 262  Q
    | ||  | ||| || ||||||||||||||||  ||||||||| |||| |||||| ||||||| |||||||||    
T  25724438 ataagttaaaatactttggtagaagatatgaagaaaggtcaatcagaagttaacattttggaccagaagaaa 25724509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 238
Target Start/End: Original strand, 24308579 - 24308717
Alignment:
Q  102 aattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagtacaagagaa-act 200  Q
    |||| ||||||| ||||| |||| ||| | |||| |||||| |||||||||||   || ||||||||| || ||||||||| || || |||||||| |      
T  24308579 aattggatatgtgaatatatgttcaagtgcgcaggaccataaattaaaatttaacaaggtttgaacatgtataagagcatcagatgtccaagagaagatc 24308678  T
Q  201 aaagact-tggtagaagatatgagcaaaggtcaaccaga 238  Q
    ||||||| ||||||||||| | |  ||||||||||||||    
T  24308679 aaagactatggtagaagatctaaagaaaggtcaaccaga 24308717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 90 - 270
Target Start/End: Original strand, 31584045 - 31584227
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagta 189  Q
    ||||||||||| |||| |||||||||||| ||| ||||| |||||| |||||| ||||||||||||  || | ||| ||||||  |||||||| |||| |    
T  31584045 gtattgaagaataattggatatgttaatacgtgcttaagtgtgcaggaccatagattaaaatttatcaaggtctgagcatatatgagagcatcagaagca 31584144  T
Q  190 caagagaaact-aaagacttggtagaagatatgagcaaaggtcaaccagatgttaac-ttttggatcagaagaaaagttgcac 270  Q
    ||||||||| | |||||||| ||||||||| |||  ||| |||||||| | || ||| |||||||||| ||||| ||||||||    
T  31584145 caagagaaattaaaagacttcgtagaagatctgaagaaatgtcaaccataagtcaacattttggatcataagaagagttgcac 31584227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 43282146 - 43282251
Alignment:
Q  91 tattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagtac 190  Q
    ||||||||||||||| | |||| |||||| |||||||| ||||||| ||||  ||||||| ||||  |||||||| |||||| |||||||||||||| ||    
T  43282146 tattgaagaacaattgggtatgataatatatgtttaagtgtgcaga-ccatggattaaaacttatcaagttttgagcatatataagagcatctgaagcac 43282244  T
Q  191 aagagaa 197  Q
    |||||||    
T  43282245 aagagaa 43282251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 34188221 - 34188108
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagta 189  Q
    |||||||| |||||||  ||||| |||||| |||||| |||||||| |||||| |||| |||||||  ||  |||| |||||| ||||||||  ||||||    
T  34188221 gtattgaaaaacaattgaatatgctaatatatgtttacgcgtgcaggaccatagattataatttatcaaggcttgatcatatataagagcattagaagta 34188122  T
Q  190 caagagaaactaaa 203  Q
    |||||||| |||||    
T  34188121 caagagaagctaaa 34188108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 17103105 - 17103193
Alignment:
Q  131 tgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagtacaagagaaact-aaagacttggtagaagat 218  Q
    ||||| ||||||||||||||||||   |||| ||||||| || ||||||||| |||| ||||||||| || ||||||||||||||||||    
T  17103105 tgcaggaccatatattaaaatttaacaagttctgaacatgtataagagcatcagaagaacaagagaagctaaaagacttggtagaagat 17103193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 15441051 - 15440927
Alignment:
Q  114 taatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagtacaagagaaactaaagacttggtag 213  Q
    |||||| || ||||| |||||  |||||| ||||||||||||  |  | |||||||||||||||||||| |||| ||||||||| ||||| | ||  |||    
T  15441051 taatatatgcttaagtgtgcatgaccataaattaaaatttatcaaagtctgaacatatacaagagcatcagaagcacaagagaagctaaataatttatag 15440952  T
Q  214 aagatatgagcaaaggtcaaccaga 238  Q
    ||||| |||  ||||||||| ||||    
T  15440951 aagatctgaagaaaggtcaatcaga 15440927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 19361744 - 19361843
Alignment:
Q  139 catatattaaaatttattgagttttgaacatatacaagagcatctgaagtacaagagaaactaaagacttggtagaagatatgagcaaaggtcaaccaga 238  Q
    |||| ||||||||||||| ||||||||||||||| |||| ||||||||  |||||||||   ||||||||  ||||| || |||  ||||||||| ||||    
T  19361744 catagattaaaatttattaagttttgaacatatataagaacatctgaaccacaagagaataaaaagactttatagaatatctgaagaaaggtcaatcaga 19361843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 19380384 - 19380483
Alignment:
Q  139 catatattaaaatttattgagttttgaacatatacaagagcatctgaagtacaagagaaactaaagacttggtagaagatatgagcaaaggtcaaccaga 238  Q
    |||| ||||||||||||| ||||||||||||||| |||| ||||||||  |||||||||   ||||||||  ||||| || |||  ||||||||| ||||    
T  19380384 catagattaaaatttattaagttttgaacatatataagaacatctgaaccacaagagaataaaaagactttatagaatatctgaagaaaggtcaatcaga 19380483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 230
Target Start/End: Original strand, 14580362 - 14580503
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagta 189  Q
    ||||| |||||||||||||||||||||||| |||| ||| |||||| | | || |||||||||||   || | | || || || || |||| | |||| |    
T  14580362 gtattaaagaacaattagatatgttaatatatgttcaagagtgcaggatcttagattaaaatttaacaaggtctaaatatgtataaaagcaccagaagca 14580461  T
Q  190 caagagaaact-aaagacttggtagaagatatgagcaaaggt 230  Q
    ||||||||  | ||||||||| ||||||||||||| ||||||    
T  14580462 caagagaagttaaaagacttgatagaagatatgaggaaaggt 14580503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 262
Target Start/End: Complemental strand, 33439348 - 33439172
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagta 189  Q
    ||||| ||||||||||||||||| |||||| || | ||| |||||| |||||| |||||| ||||   || | ||||||| || ||||||||| |||| |    
T  33439348 gtattaaagaacaattagatatgctaatatatgatcaagtgtgcaggaccatagattaaattttaaaaagatatgaacatgtataagagcatcagaagca 33439249  T
Q  190 c-aagagaaact-aaagac-ttggtagaagatatgagcaaaggtcaaccagatgttaac-ttttggatcagaagaaa 262  Q
    | |||||||  | |||||| |||||||||||| |||  |||||| ||||| | || ||| | |||||||||||||||    
T  33439248 caaagagaagttaaaagactttggtagaagatctgatgaaaggtaaaccataagtcaacgtcttggatcagaagaaa 33439172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 262
Target Start/End: Original strand, 30805618 - 30805717
Alignment:
Q  165 aacatatacaagagcatctgaagtacaagagaaactaaagact-tggtagaagatatgagcaaaggtcaaccagatgttaac-ttttggatcagaagaaa 262  Q
    ||||| || ||||||||  |||| ||||||||| ||||| ||| ||||||||||| |||  |||||||||||||| || ||| | |||||||||||||||    
T  30805618 aacatgtataagagcatgagaagcacaagagaagctaaacactatggtagaagatctgaagaaaggtcaaccagaagtgaacatcttggatcagaagaaa 30805717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 17087863 - 17087933
Alignment:
Q  168 atatacaagagcatctgaagtacaagagaaactaaagacttggtagaagatatgagcaaaggtcaaccaga 238  Q
    ||||| |||||||| ||||  ||||||||| ||||| |||| ||||||||| |||  ||||||||||||||    
T  17087863 atatataagagcatttgaaacacaagagaagctaaatactttgtagaagatctgaagaaaggtcaaccaga 17087933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 18129680 - 18129734
Alignment:
Q  101 caattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttat 155  Q
    |||||||||||| |||||| |||||||| |||||| |||||| | ||||||||||    
T  18129680 caattagatatgctaatatttgtttaagtgtgcaggaccatagactaaaatttat 18129734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 41029732 - 41029654
Alignment:
Q  94 tgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatata 172  Q
    |||||||||||| |||||| | |||| |||||||| |||||| | |||| ||||||||||||  || | ||||||||||    
T  41029732 tgaagaacaattggatatgctgatatatgtttaagtgtgcaggatcataaattaaaatttatcaaggtctgaacatata 41029654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 1812491 - 1812580
Alignment:
Q  108 atatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagtacaagagaa 197  Q
    ||||| |||||| |||||||| |||||  |||||| ||||||||||||  || | | ||||||||  ||||||| ||||| |||||||||    
T  1812491 atatgctaatatatgtttaagtgtgcatgaccataaattaaaatttatcaaggtctaaacatatatgagagcatatgaagcacaagagaa 1812580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 4244421 - 4244304
Alignment:
Q  92 attgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagtaca 191  Q
    |||||||||||||| |||| ||||||||||||| ||| |||||  | |||| ||||||||||||  |||| ||||||||||  ||||||||||||| |||    
T  4244421 attgaagaacaattggataagttaatatgtgttcaagtgtgcaagatcatagattaaaatttatcaagttctgaacatatatgagagcatctgaagcaca 4244322  T
Q  192 agagaaactaaagacttg 209  Q
    |||||||||||| |||||    
T  4244321 agagaaactaaatacttg 4244304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 238
Target Start/End: Original strand, 38076041 - 38076191
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagta 189  Q
    ||||||||||||||||||||||  |||||| || | ||| ||||| |||||||||||||||||||   || | ||||||| || ||||||||| |||| |    
T  38076041 gtattgaagaacaattagatatactaatatatgctcaagtgtgcataaccatatattaaaatttaacaaggtctgaacatgtataagagcatcagaagca 38076140  T
Q  190 caagagaaactaa-agact-tggtagaagatatgagcaaaggtcaaccaga 238  Q
    ||| |||| |||| ||||| ||||||||||| |||  ||||||||||||||    
T  38076141 caatagaagctaatagactatggtagaagatttgaagaaaggtcaaccaga 38076191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 262
Target Start/End: Complemental strand, 17119449 - 17119273
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatata-caagagcatctgaagt 188  Q
    ||||| |||||| ||| | ||||||||||| |||||||| |||||| |||||| |||||||||||   |  | ||||||| ||  ||||||||| ||||     
T  17119449 gtattaaagaactatttggtatgttaatatatgtttaagtgtgcaggaccatagattaaaatttaacaaagtctgaacatgtataaagagcatcagaagc 17119350  T
Q  189 acaagagaaac-taaagact-tggtagaagatatgagcaaaggtcaaccagatgttaac-ttttggatcagaagaaa 262  Q
    ||||||||||| |||||||| ||||||||||| |||   ||||||||||||| || |||   |||||||||||||||    
T  17119349 acaagagaaacttaaagactatggtagaagatctgaaggaaggtcaaccagaagtcaacaccttggatcagaagaaa 17119273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 192
Target Start/End: Complemental strand, 4515097 - 4514995
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagta 189  Q
    |||||||| ||||| | ||||||||||||| |||| ||| |||||| ||||||||||||||||||   || | ||||||| || ||||||||| |||| |    
T  4515097 gtattgaaaaacaactggatatgttaatatatgttcaagtgtgcaggaccatatattaaaatttaacaaggtctgaacatgtataagagcatcagaagca 4514998  T
Q  190 caa 192  Q
    |||    
T  4514997 caa 4514995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 238
Target Start/End: Original strand, 5638344 - 5638504
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtt------------taagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaaga 177  Q
    |||||||||||||||||||||||||||||| ||||            |||| |||||| || ||| ||||||||||||  |||| |||||||||| ||||    
T  5638344 gtattgaagaacaattagatatgttaatatatgttctgaacatatattaagtgtgcaggacaatagattaaaatttatcaagttctgaacatatataaga 5638443  T
Q  178 gcatctgaagtacaagagaaactaaagacttggtagaagatatgagcaaaggtcaaccaga 238  Q
     | ||||||  |||| |||| |||||||  |  ||||||||||||  ||||||||||||||    
T  5638444 tcttctgaaacacaatagaagctaaagatattatagaagatatgaataaaggtcaaccaga 5638504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 9796592 - 9796485
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagta 189  Q
    ||||| |||||||||| ||||||||||||| |||| ||| |||||| | |||| |||||||||||   || | ||||||| || ||||||||| |||| |    
T  9796592 gtattaaagaacaattggatatgttaatatatgttcaagtgtgcaggatcatagattaaaatttaacaaggtctgaacatgtataagagcatcagaagca 9796493  T
Q  190 caagagaa 197  Q
    ||| ||||    
T  9796492 caaaagaa 9796485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 13291375 - 13291434
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaa 149  Q
    |||||||||||||||||||||||||||||| |||| ||| |||||| |||| | ||||||    
T  13291375 gtattgaagaacaattagatatgttaatatatgttcaagtgtgcaggaccaaagattaaa 13291434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 259
Target Start/End: Complemental strand, 24113020 - 24112849
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttat-tgagttttgaacatatacaagagcatctgaagt 188  Q
    ||||||||||||| |  |||||| |||||||| || |||| ||||| | |||| ||||||||||||   ||| ||||||||||| |||||||| |||| |    
T  24113020 gtattgaagaacagtgggatatgctaatatgtattcaagcatgcaggatcatagattaaaatttatcaaagtattgaacatatataagagcatttgaatt 24112921  T
Q  189 acaagagaa-actaaagacttggtagaagatatgagcaaaggtcaaccagatgttaacttttggatcagaag 259  Q
     ||| |||| |  |||||||| ||||||||| |||  ||| |||||||||| || ||  ||| |||||||||    
T  24112920 gcaaaagaagatgaaagacttagtagaagatctgaagaaaagtcaaccagaagtcaaggttttgatcagaag 24112849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 20284915 - 20284957
Alignment:
Q  92 attgaagaacaattagatatgttaatatgtgtttaagcgtgca 134  Q
    |||||||||||||||||||||||||||| |||| ||| |||||    
T  20284915 attgaagaacaattagatatgttaatatatgttcaagtgtgca 20284957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 4253319 - 4253254
Alignment:
Q  90 gtattgaagaacaattag-atatgttaatatgtgtttaagcgtgcagaaccatatattaaaattta 154  Q
    |||||||||||||||| | ||| ||||||||||||| ||| |||||| ||| || |||||||||||    
T  4253319 gtattgaagaacaatttggataagttaatatgtgttcaagtgtgcaggaccgtagattaaaattta 4253254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 11045045 - 11045001
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgca 134  Q
    ||||||||||||||| ||||||| |||||| |||||||| |||||    
T  11045045 gtattgaagaacaatgagatatgctaatatatgtttaagtgtgca 11045001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 14426921 - 14426985
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaattta 154  Q
    ||||| |||||||||| |||||| |||||| |||| ||| |||||| |||| | |||||||||||    
T  14426921 gtattaaagaacaattggatatgctaatatatgttcaagtgtgcaggaccaaagattaaaattta 14426985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 17034156 - 17034248
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatc 182  Q
    |||||||||||||||| ||||||||||||  |||| ||| |||||  | |||| ||||| |||||   || ||||||||| || |||||||||    
T  17034156 gtattgaagaacaattggatatgttaatacatgttcaagtgtgcacgatcatagattaatatttaacaaggtttgaacatgtataagagcatc 17034248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 17637190 - 17637330
Alignment:
Q  96 aagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagtacaagag 195  Q
    |||||||||| |||||| | |||| |||| |||  || ||||||||||||||||||| |   || | ||||||| ||||| |||||| |||| ||||||     
T  17637190 aagaacaattggatatgctgatatatgttcaagtatggagaaccatatattaaaattaaacaaggtctgaacatgtacaaaagcatcagaagcacaagat 17637289  T
Q  196 aaac-taaagact-tggtagaagatatgagcaaaggtcaac 234  Q
    || |  ||||||| ||||| |||||||||  ||||||||||    
T  17637290 aagcaaaaagactatggtaaaagatatgaaaaaaggtcaac 17637330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 131 - 269
Target Start/End: Complemental strand, 22269064 - 22268925
Alignment:
Q  131 tgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagtacaagagaaactaaa-gacttggtagaagatatgagcaaagg 229  Q
    ||||| |||||| ||||||||||||  || | |||| |||||  |||||||| |||||| ||||||| ||||| |||| |||||||||| |||  |||||    
T  22269064 tgcaggaccatagattaaaatttatcaaggtctgaaaatatattagagcatcagaagtataagagaagctaaaagactaggtagaagatctgaagaaagg 22268965  T
Q  230 tcaaccagatgttaacttttggatcagaagaaaagttgca 269  Q
    | ||||||| || ||||||||||||||||||| |||||||    
T  22268964 taaaccagaagtcaacttttggatcagaagaagagttgca 22268925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 262
Target Start/End: Complemental strand, 18848780 - 18848605
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagta 189  Q
    |||||||||||||||| |||||| |||||| |||| ||| || ||||||||||||||||||||||   |||||| ||||| || || | ||||  ||| |    
T  18848780 gtattgaagaacaattggatatgataatatatgttcaagtgtacagaaccatatattaaaatttaacaagttttaaacatctataacaacatcaaaagca 18848681  T
Q  190 caagagaaact-aaagact-tggtagaagatatgagcaaaggtcaaccagatgttaac-ttttggatcagaagaaa 262  Q
    |||||||| || | | ||| ||||||||||| |||  |||||||||||||| || |||   |||||||||||||||    
T  18848680 caagagaagctgagaaactatggtagaagatctgaagaaaggtcaaccagaagtcaacgccttggatcagaagaaa 18848605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 260
Target Start/End: Complemental strand, 23959793 - 23959622
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagta 189  Q
    ||||| || ||||| | |||||| |||||| |||| ||| ||| || ||||||||||||||||||   || | ||||||| || |||||| ||||||| |    
T  23959793 gtattaaataacaacttgatatgctaatatatgttcaagtgtggaggaccatatattaaaatttaacaaggtatgaacatgtataagagcgtctgaagca 23959694  T
Q  190 caagagaaacta-aagacttggtagaagatatgagcaaaggtcaaccagatgttaacttttggatcagaaga 260  Q
    | |||||| ||  ||||||||||||||||| |||  |||||||||| ||| || ||||||| ||||| ||||    
T  23959693 ctagagaagctggaagacttggtagaagatctgaagaaaggtcaactagaagtcaacttttagatcataaga 23959622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 35665922 - 35666002
Alignment:
Q  184 gaagtacaagagaaactaaa-gacttggtagaagatatgagcaaaggtcaaccagatgttaac-ttttggatcagaagaaa 262  Q
    |||||| |||| |||||||| ||||||||||||||| |||  ||| |||||||||| || ||| |||||||||||||||||    
T  35665922 gaagtataagaaaaactaaaagacttggtagaagatctgaagaaaagtcaaccagaagtcaacattttggatcagaagaaa 35666002  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 12061270 - 12061224
Alignment:
Q  96 aagaacaattagatatgttaatatgtgtttaagcgtgcagaaccata 142  Q
    |||||||||||||||||||||| || ||||||| |||||||| ||||    
T  12061270 aagaacaattagatatgttaatgtgagtttaagtgtgcagaatcata 12061224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 22272563 - 22272522
Alignment:
Q  101 caattagatatgttaatatgtgtttaagcgtgcagaaccata 142  Q
    ||||||||||||||||||| |||| ||| |||||||||||||    
T  22272563 caattagatatgttaatatttgttcaagtgtgcagaaccata 22272522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 263
Target Start/End: Original strand, 27765332 - 27765508
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagta 189  Q
    ||||| ||||| |||| ||||||||||||| |||| ||  |||||| |||||| | |||| ||||   || ||||||| | || ||||  ||| |||| |    
T  27765332 gtattaaagaataattggatatgttaatatatgttcaaatgtgcaggaccatagaataaattttaacaaggtttgaacgtttataagaatatcagaagca 27765431  T
Q  190 caagagaaact-aaagact-tggtagaagatatgagcaaaggtcaaccagatgttaac-ttttggatcagaagaaaa 263  Q
    |||||||| || ||||||| ||||||||||| |||  ||| |||||||||| || ||| | || |||||||||||||    
T  27765432 caagagaatctcaaagactatggtagaagatctgaagaaatgtcaaccagaagtcaacatcttcgatcagaagaaaa 27765508  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 271
Target Start/End: Complemental strand, 956982 - 956804
Alignment:
Q  94 tgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagtacaag 193  Q
    |||||||| |||  |||||||| ||| |||||||| |||||| | |||| ||||||||||||  || ||||||||||||| ||| |||| |||  || ||    
T  956982 tgaagaacgattgaatatgttagtatatgtttaagtgtgcaggaacataaattaaaatttatcaaggtttgaacatatacgagaacatcagaaacacgag 956883  T
Q  194 agaaact-aaagacttggtagaagatatgagcaaaggtcaaccagatgttaacttttggatcagaagaaaagttgcact 271  Q
    |||| || ||| | |||||||||||| |||  |||| ||||||| | || ||||||||||||| ||||| |||||||||    
T  956882 agaagctaaaaaatttggtagaagatctgaagaaagatcaaccataagtcaacttttggatcataagaagagttgcact 956804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 8259671 - 8259601
Alignment:
Q  201 aaagacttggtagaagatatgagcaaaggtcaaccagatgttaacttttggatcagaagaaaagttgcact 271  Q
    ||||||||||||||||||||||  |||||||||||| | || ||||||||||||| ||||| || ||||||    
T  8259671 aaagacttggtagaagatatgatgaaaggtcaaccataagtcaacttttggatcaaaagaagagatgcact 8259601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 27706991 - 27707136
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagta 189  Q
    ||||| ||||| ||||||||||| ||||   |||| |||||||||  |||||| |||||||||||   ||   ||||||| || ||||||||| |||| |    
T  27706991 gtattaaagaataattagatatgctaattaatgttcaagcgtgcaagaccataaattaaaatttaacaaggcatgaacatgtataagagcatcagaagca 27707090  T
Q  190 caagagaaact-aaagact-tggtagaagatatgagcaaaggtcaa 233  Q
    ||||||||||| ||||||| ||||||||||| |||  |||||||||    
T  27707091 caagagaaactcaaagactatggtagaagatctgaataaaggtcaa 27707136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 11608835 - 11608926
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcat 181  Q
    ||||| ||||||||||||||||| |||| |||||| |||  ||||| | |||| |||||| |||||  |||| |||||||||| ||||||||    
T  11608835 gtattaaagaacaattagatatgctaatttgtgttaaagtatgcaggagcatagattaaattttatcaagttctgaacatatataagagcat 11608926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 234
Target Start/End: Original strand, 23022373 - 23022463
Alignment:
Q  145 ttaaaatttattgagttttgaacatatacaagagcatctgaagtacaagagaaacta-aagacttggtagaagatatgagcaaaggtcaac 234  Q
    |||||||||||  || | |||||||||| |||| ||||  ||| | ||||||| ||| |||||||||||||||||||||  ||||||||||    
T  23022373 ttaaaatttatcaaggtctgaacatatataagaacatcataagcaaaagagaagctagaagacttggtagaagatatgaagaaaggtcaac 23022463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 11016384 - 11016331
Alignment:
Q  102 aattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttat 155  Q
    |||| |||||| |||||| ||||||||||||||| |||||| | ||||||||||    
T  11016384 aattggatatgctaatatttgtttaagcgtgcaggaccatagactaaaatttat 11016331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 4031219 - 4031283
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaattta 154  Q
    ||||| ||||| |||||||| ||||||||| |||| ||| |||||  | ||||||||||||||||    
T  4031219 gtattaaagaataattagatgtgttaatatatgttcaagtgtgcatgatcatatattaaaattta 4031283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 24865752 - 24865676
Alignment:
Q  163 tgaacatatacaagagcatctgaagtacaagagaaactaaag-acttggtagaagatatgagcaaaggtcaaccaga 238  Q
    |||||||||| | ||||||| |||| |||||||||  ||||  ||||||||||||||||||  ||||||||| ||||    
T  24865752 tgaacatatatatgagcatcagaagcacaagagaagttaaaatacttggtagaagatatgaagaaaggtcaatcaga 24865676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 96 - 232
Target Start/End: Original strand, 17146223 - 17146360
Alignment:
Q  96 aagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagtacaagag 195  Q
    ||||||||||  ||||| |||||| | |||||| |||||| | ||||||||||||||||   || |||||||||| | ||||| ||| |||| |||||||    
T  17146223 aagaacaattgtatatgctaatatatatttaagtgtgcaggatcatatattaaaatttaacaaggtttgaacatagataagagtatcagaagcacaagag 17146322  T
Q  196 aaact-aaagacttggtagaagatatgagcaaaggtca 232  Q
    || || ||| ||| ||||||||||||||  ||||||||    
T  17146323 aagctaaaatactcggtagaagatatgaagaaaggtca 17146360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 26239035 - 26238922
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagta 189  Q
    |||||||||||||||| |||||| |||||| | ||||||| ||||  |||||| ||||||||||||| || | | |||||||| || |||||| |||| |    
T  26239035 gtattgaagaacaattggatatgctaatatatttttaagcatgcatgaccataaattaaaatttattaaggtctaaacatatataaaagcatcagaagca 26238936  T
Q  190 caagagaaactaaa 203  Q
    ||| |||| |||||    
T  26238935 caaaagaagctaaa 26238922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 10821521 - 10821467
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatata 144  Q
    |||||||||||||||||||||| |||||||||||| ||| |||||||| ||||||    
T  10821521 gtattgaagaacaattagatatattaatatgtgttcaagtgtgcagaatcatata 10821467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 6560556 - 6560645
Alignment:
Q  108 atatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttattgagttttgaacatatacaagagcatctgaagtacaagagaa 197  Q
    ||||| |||||| ||||||||  |||||||||||| |||| |||||||  || | |||||||||| |||||||||  ||| |||||||||    
T  6560556 atatggtaatatatgtttaagtttgcagaaccataaattacaatttatcaaggtctgaacatatataagagcatcaaaagcacaagagaa 6560645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 12394880 - 12394825
Alignment:
Q  101 caattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaatttatt 156  Q
    ||||||||||||||||||| |||| ||| |||||| |||||| | |||||||||||    
T  12394880 caattagatatgttaatatttgttcaagtgtgcaggaccatagactaaaatttatt 12394825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 264
Target Start/End: Original strand, 10814438 - 10814611
Alignment:
Q  96 aagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatata--ttaaaatttattgagttttgaacatatacaagagcatctgaagtacaag 193  Q
    |||||||||| |||||| ||||||  ||||||| ||| || ||||||||  ||||||||||   || | ||||||| || |||||||||  ||||| |||    
T  10814438 aagaacaattggatatgctaatatacgtttaagtgtgtaggaccatatagattaaaatttaacaaggtctgaacatgtataagagcatcaaaagtaaaag 10814537  T
Q  194 agaaact-aaagact-tggtagaagatatgagcaaaggtcaaccagatgttaactt-ttggatcagaagaaaag 264  Q
    |||| || ||||||| ||||||||||  |||   |||||||||||||  |||||   |||||||||||||||||    
T  10814538 agaagctcaaagactatggtagaagaattgaatgaaggtcaaccagaaattaacaccttggatcagaagaaaag 10814611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0804 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 79 - 143
Alignment:
Q  90 gtattgaagaacaattagatatgttaatatgtgtttaagcgtgcagaaccatatattaaaattta 154  Q
    ||||| |||||||||||||||||||||||| |||| ||| |||||| | | || |||||||||||    
T  79 gtattaaagaacaattagatatgttaatatatgttcaagagtgcaggatcttagattaaaattta 143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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