View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11299_high_1 (Length: 578)
Name: NF11299_high_1
Description: NF11299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11299_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 16 - 567
Target Start/End: Complemental strand, 31553968 - 31553420
Alignment:
| Q |
16 |
caaatacatcaatataatatcatgatatcactcttcagcaaagtcaacaaatctttgagatctgattcctcttcatccatggatgagatagtagattggt |
115 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31553968 |
caaatacatcaatataa---catgatatcactcttcagcaaagtcaacaaatctttgagatctgattcctcttcatccatggatgagatagtagattggt |
31553872 |
T |
|
| Q |
116 |
ctcaactccctatagaactatggcctaagataggaaaatatcttgataaacacatagatgttctcagatttcgcagtgtatgcgaatcatttcgttcttc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31553871 |
ctcaactccctatagaactatggcctaagataggaaaatatcttgataatcacatagatgttctcagatttcgcagtgtctgcgaatcatttcgttcttc |
31553772 |
T |
|
| Q |
216 |
cattcctccatctcatccaaattctccttcttttcctttacaaatacctcaccccgtctacaactccctaaacaactacgtcaaccaatcaactgtttat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31553771 |
cattcctccatctcatccaaattctccttcttttcctttacaaatacctcaccccgtctacaactccctaaacaactacgtcaaccaatccactgtttat |
31553672 |
T |
|
| Q |
316 |
atcattgaaccaactgatgcaagttccaactccaatttagaacctttagcaccttcttcttccaaaggttggttgattaaggtagaagaaacaaagaatc |
415 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31553671 |
atcattgaaccaactgatgcaagttccaactccaatttagaacctttagcaccttcttcttccaaaggttggttgattaaggtagaagaaacaaagaatc |
31553572 |
T |
|
| Q |
416 |
aacctgtgagtttgttgagtcctatctctgaccgaaaactatcataccctcttagcaataacaacacttctcccatactatggaacttgttggattatag |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31553571 |
aacctgtgagtttgttgagtcctatctctgaccgaaaactatcataccctcttagcaataacaacacttctcccatgctatggaacttgttggattatag |
31553472 |
T |
|
| Q |
516 |
ggtcattgagctatgcaaatcatataaaattgaaaaaactacacctttctct |
567 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31553471 |
ggtcattgagctatgcaaatcatataaaattgaaaaaactacacctttctct |
31553420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 92 - 541
Target Start/End: Complemental strand, 31564283 - 31563834
Alignment:
| Q |
92 |
ccatggatgagatagtagattggtctcaactccctatagaactatggcctaagataggaaaatatcttgataaacacatagatgttctcagatttcgcag |
191 |
Q |
| |
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|||||||||||| ||||||||||||||| ||||| | ||| |||||| | |||||||| || ||||||||||| ||||||||| ||||||||||||| || |
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| T |
31564283 |
ccatggatgagaaagtagattggtctcatctccccaaagagctatggtccaagatagggaagtatcttgataatcacatagatattctcagatttcggag |
31564184 |
T |
|
| Q |
192 |
tgtatgcgaatcatttcgttcttccattcctccatctcatccaaattctccttcttttcctttacaaatacctcaccccgtctacaactccctaaacaac |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | |||||||| | |
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|
| T |
31564183 |
tgtatgcgaatcatttcgttcttccattcctccatctcatccaaattctccttcttttcctttacaaatacctcacaccatttttgactcccta---tat |
31564087 |
T |
|
| Q |
292 |
tacgtcaaccaatcaactgtttatatcattgaaccaactgatgcaagttccaactccaatttagaacctttagcaccttcttcttccaaaggttggttga |
391 |
Q |
| |
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||| | | ||||||||| ||||| | |||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||| | ||||||||||||||| |
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| T |
31564086 |
taccttcatcaatcaactatttatcttattgaaccaactaatggaagttccaacttcaatttaccacctttagcaccttcttataccaaaggttggttga |
31563987 |
T |
|
| Q |
392 |
ttaaggtagaagaaacaaagaatcaacctgt---gagtttgttgagtcctatctctgaccgaaaactatcataccctcttagcaataacaacacttctcc |
488 |
Q |
| |
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| || || |||||| |||| ||| | ||| | ||||||||||||||||||||| ||| | ||| ||||||| |||||| || |||||||| |||||| |
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| T |
31563986 |
tcaaagtggaagaatcaaataataatcctttgaagagtttgttgagtcctatctccgactgcaaattatcatatcctcttgacagtaacaacagttctcc |
31563887 |
T |
|
| Q |
489 |
catactatggaacttgttggattatagggtcattgagctatgcaaatcatata |
541 |
Q |
| |
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|| |||||||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
31563886 |
aattatatggaacttgttgaattatagggtcattgagctatgcaagtcatata |
31563834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 36 - 551
Target Start/End: Complemental strand, 18232924 - 18232430
Alignment:
| Q |
36 |
catgatatcactcttcagcaaagtcaacaaatctttgagatctgattcctcttc---atccatggatgagatagtagattggtctcaactccctatagaa |
132 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
18232924 |
catgatatcacttttcagcaaagtcaacaaatctttgagatctgatacctcttcttcatccatggatgagaaagtagattggtctcaactccctaaagaa |
18232825 |
T |
|
| Q |
133 |
ctatggcctaagataggaaaatatcttgataaacacatagatgttctcagatttcgcagtgtatgcgaatcatttcgttcttccattcctccatctcatc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || |
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|
| T |
18232824 |
ctatggcctaagataggaaaatatcttgataatcacatagatgttctcagatttcgcagtgtatgtgaatcatttcgttcttccattcctctttctcttc |
18232725 |
T |
|
| Q |
233 |
caaattctccttcttttcctttacaaatacctcaccccgtctacaactccctaaacaactacgtcaaccaatcaactgtttatatcattgaaccaactga |
332 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||| ||||| | ||| |||||||||| |
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| T |
18232724 |
caaattctccttcttttcctttgcaaat------------------ctccccaaacaactacctcaaccaatcaaccatttatcttattcaaccaactga |
18232643 |
T |
|
| Q |
333 |
tgcaagttccaactccaatttagaacctttagcaccttcttcttccaaaggttggttgattaaggtagaagaaacaaagaatcaacctgtgagtttgttg |
432 |
Q |
| |
|
||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||| |
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|
| T |
18232642 |
tgcaagttccaactccactttaccacctt------cttcttcttccaaaggttggttgattaaggtacaagaatcaaagaatcaatctttgagtttgttg |
18232549 |
T |
|
| Q |
433 |
agtcctatctctgaccgaaaactatcataccctcttagcaataacaacacttctcccatactatggaacttgttggattatagggtcattgagctatgca |
532 |
Q |
| |
|
||||||||| | ||| || | ||||| |||||||||||| |||||||||||||| || ||||||| |||||||||||||||||||||||||||||| |
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|
| T |
18232548 |
agtcctatcaccgacaaaatattatcaaaccctcttagcagtaacaacacttctctgatgatatggaatatgttggattatagggtcattgagctatgca |
18232449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 18234708 - 18234629
Alignment:
| Q |
145 |
ataggaaaatatcttgataaacacatagatgttctcagatttcgcagtgtatgcgaatcatttcgttcttccattcctcc |
224 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||||||||| ||||| |||||| || ||||||||| |||||||||||||||| |
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| T |
18234708 |
atagaaaaatatgttgataatcacatagatgttctcaaatttcacagtgtttgtgaatcattttgttcttccattcctcc |
18234629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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