View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11299_high_4 (Length: 363)
Name: NF11299_high_4
Description: NF11299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11299_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 33880153 - 33880481
Alignment:
| Q |
1 |
agaccgtcgtgataaggtgtaccggctgcgccgacgataacagcacggagtaaatcgatgcgggtttcataggctttgacgtagatggaatcggggagat |
100 |
Q |
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| T |
33880153 |
agaccgtcgtgataaggtgtaccggctgcgctgacgataacggcacggagtaaatcgatgcgggtttcatatgctttgacgtagatggaatcggggagat |
33880252 |
T |
|
| Q |
101 |
tgttttcgagaattttccactctttcatgattcgtttgtagagggcgctttttgtatctctgaagcagtttccactgatgttgtggctgaggaatttgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33880253 |
tgttttcgagaattttccactctttcatgattcgtttgtagagggcgctttttgtatctctgaagcagtttccactgatgttgtggctgaggaatttgtg |
33880352 |
T |
|
| Q |
201 |
atctgaatcgtctgaaaccatgtcgaaggtgttcnnnnnnnccatcttaattttcccctttttctttgattctcaattctcttgatctgttttgatatat |
300 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33880353 |
atctgaatcgtctgaaaccatttcgaaggtgttctttttttccatcttaattttcccctttttctttgattctcaattctcttgatctgttttg----at |
33880448 |
T |
|
| Q |
301 |
tctcaattctgaactcaatagtgttgtgtgttc |
333 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
33880449 |
tctcaattctgaactcaatagtgttgtgtgttc |
33880481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 16683888 - 16683667
Alignment:
| Q |
6 |
gtcgtgataaggtgtaccggctgcgccgacgataacagcacggagtaaatcgatgcgggtttcataggctttgacgtagatggaatcggggagattgttt |
105 |
Q |
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| T |
16683888 |
gtcgtggtaaggtgtaccagcagcgccaacgatgacggcgcgtagtaaatcaatacggcgttcgtaggctctgacgtagatggaatcagggagattcttt |
16683789 |
T |
|
| Q |
106 |
tcgagaattttccactctttcatgattcgtttgtagagggcgctttttgtatctctgaagcagtttccactgatgttgtggctgaggaatttgtgatctg |
205 |
Q |
| |
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||||| |||||||||||||||||||||| ||| || | ||| |||||||| || |||||||| ||||| | |||||||| | | || |||||||||| | |
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| T |
16683788 |
tcgaggattttccactctttcatgattcttttatatatggcactttttgtgtcgctgaagcaatttccgccgatgttgttgaggcggtatttgtgatcgg |
16683689 |
T |
|
| Q |
206 |
aatcgtctgaaaccatgtcgaa |
227 |
Q |
| |
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||||||||||||||| |||||| |
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| T |
16683688 |
aatcgtctgaaaccaagtcgaa |
16683667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 17658124 - 17657903
Alignment:
| Q |
6 |
gtcgtgataaggtgtaccggctgcgccgacgataacagcacggagtaaatcgatgcgggtttcataggctttgacgtagatggaatcggggagattgttt |
105 |
Q |
| |
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|||||| ||||||||||| || ||||| ||||| || || || |||||||| || ||| ||| |||||| |||||||||||||||| |||||||| ||| |
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| T |
17658124 |
gtcgtggtaaggtgtaccagcagcgccaacgatgacggcgcgtagtaaatcaatacggcgttcgtaggctctgacgtagatggaatcagggagattcttt |
17658025 |
T |
|
| Q |
106 |
tcgagaattttccactctttcatgattcgtttgtagagggcgctttttgtatctctgaagcagtttccactgatgttgtggctgaggaatttgtgatctg |
205 |
Q |
| |
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||||| |||||||||||||||||||||| ||| || | ||| |||||||| || |||||||| ||||| | |||||||| | | || |||||||||| | |
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| T |
17658024 |
tcgaggattttccactctttcatgattcttttatatatggcactttttgtgtcgctgaagcaatttccgccgatgttgttgaggcggtatttgtgatcgg |
17657925 |
T |
|
| Q |
206 |
aatcgtctgaaaccatgtcgaa |
227 |
Q |
| |
|
||||||||||||||| |||||| |
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|
| T |
17657924 |
aatcgtctgaaaccaagtcgaa |
17657903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 16665488 - 16665265
Alignment:
| Q |
4 |
ccgtcgtgataaggtgtaccggctgcgccgacgataacagcacggagtaaatcgatgcgggtttcataggctttgacgtagatggaatcggggagattgt |
103 |
Q |
| |
|
||||| || |||||||||||||| ||||| ||||| || || || || ||||| || ||| ||||||||||| | |||||||||||||| |||||||| | |
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| T |
16665488 |
ccgtcatggtaaggtgtaccggcagcgccaacgatgactgcgcgtagcaaatcaatacggctttcataggctctaacgtagatggaatcagggagattct |
16665389 |
T |
|
| Q |
104 |
tttcgagaattttccactctttcatgattcgtttgtagagggcgctttttgtatctctgaagcagtttccactgatgttgtggctgaggaatttgtgatc |
203 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| | || ||| |||||| |||||||| ||||| | |||||||| | || |||||||||| |
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| T |
16665388 |
tttcgaggattttccactctttcatgattcttttgtatatggaacttcttgtattgctgaagcaatttccgccgatgttgtcgagtcggtatttgtgatc |
16665289 |
T |
|
| Q |
204 |
tgaatcgtctgaaaccatgtcgaa |
227 |
Q |
| |
|
|||||||||||||||| |||||| |
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|
| T |
16665288 |
ggaatcgtctgaaaccaagtcgaa |
16665265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 17639858 - 17639635
Alignment:
| Q |
4 |
ccgtcgtgataaggtgtaccggctgcgccgacgataacagcacggagtaaatcgatgcgggtttcataggctttgacgtagatggaatcggggagattgt |
103 |
Q |
| |
|
||||| || |||||||||||||| ||||| ||||| || || || || ||||| || ||| ||||||||||| | |||||||||||||| |||||||| | |
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| T |
17639858 |
ccgtcatggtaaggtgtaccggcagcgccaacgatgactgcgcgtagcaaatcaatacggctttcataggctctaacgtagatggaatcagggagattct |
17639759 |
T |
|
| Q |
104 |
tttcgagaattttccactctttcatgattcgtttgtagagggcgctttttgtatctctgaagcagtttccactgatgttgtggctgaggaatttgtgatc |
203 |
Q |
| |
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||||||| |||||||||||||||||||||| |||||| | || ||| |||||| |||||||| ||||| | |||||||| | || |||||||||| |
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| T |
17639758 |
tttcgaggattttccactctttcatgattcttttgtatatggaacttcttgtattgctgaagcaatttccgccgatgttgtcgagtcggtatttgtgatc |
17639659 |
T |
|
| Q |
204 |
tgaatcgtctgaaaccatgtcgaa |
227 |
Q |
| |
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|||||||||||||||| |||||| |
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|
| T |
17639658 |
ggaatcgtctgaaaccaagtcgaa |
17639635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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