View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11299_high_5 (Length: 360)
Name: NF11299_high_5
Description: NF11299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11299_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 4677191 - 4676844
Alignment:
| Q |
1 |
atcatagcataaatatgaatgactaaagagtcgtgagatt----atttccaatttgatgggatacataccttagttattgggcaaaaacaatactcgagc |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4677191 |
atcatagcataaatatgaatgactaaagagtcgtgagattgattatttccaatttgatgggatacataccttagttattgggcaaaaacaatactcgagc |
4677092 |
T |
|
| Q |
97 |
ggtgaaatggtacatgtaggctgtagcgatggaaatatataa---ataggtcacaacaagaaataatgaaaacaagggaagggtaaaggaaagtgcaaag |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4677091 |
ggtgaaatggtacatgtaggctgtagcgatggaaatatataataaataggtcacaccaagaaataatgaaaacaagggaagggtaaaggaaagtgcaaag |
4676992 |
T |
|
| Q |
194 |
aaaagagaatatgagaatcgaaaaagataaatagtttgttgcaagctcccttgccgttcctctttttctattaagatattgttcttattatcatgaaact |
293 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4676991 |
aaaagagaacatgagaatcgaaaaagataaatagtttgttgcaagctcccttgccgttcctctttttttattaagatattgttcttattatcatgaaact |
4676892 |
T |
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| Q |
294 |
taactagttttttaattaaagtcttatatccttgctatagatactagt |
341 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4676891 |
taactagttttttaattaaagtcttatatccttgctatagatactagt |
4676844 |
T |
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