View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11299_high_6 (Length: 325)
Name: NF11299_high_6
Description: NF11299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11299_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 46408805 - 46408491
Alignment:
| Q |
1 |
taaaatgataattattctctctttcaattaaatggtgtggggaacaacattttatcttcatcccttggttgcacatgactcaaatgccaacgttgggtca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46408805 |
taaaatgataattattctctctttcaattaaatggtgtcgggaacaacattttatcttcatcccttggttgcacatgactcaaatgccaacgttgggtca |
46408706 |
T |
|
| Q |
101 |
tgagggagcatggggaaacatcaccttaggcttagagtgtatatttacaaaaagtattaagacattagatatatggattcttttattacatattgttcga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46408705 |
tgagggagcatggggaaacatcaccttaggcttagagtgtatatttactaaaagtattatgacattagatatatggattcttttattacatattgttcga |
46408606 |
T |
|
| Q |
201 |
cgctcat-ttttcattagtgtgagacttctaactcacacttgacatacaaacacattctccatcaaatgtaagaccatccattcatttggaaatgctctc |
299 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
46408605 |
cgctcatttttttattagtgtgagacttctaactcacacttgacacacaaacacattctccatcaaatgtaagaccatccattcatttggaaatgctccc |
46408506 |
T |
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| Q |
300 |
ctcaagcggattctt |
314 |
Q |
| |
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||||||||||||||| |
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| T |
46408505 |
ctcaagcggattctt |
46408491 |
T |
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