View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11299_high_8 (Length: 252)
Name: NF11299_high_8
Description: NF11299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11299_high_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 37 - 252
Target Start/End: Original strand, 43458209 - 43458424
Alignment:
| Q |
37 |
cgtaaacagagaaaacatgatatttgaccacagagtttggtctattgtgcatacgtcttcgactgcaatacaacttgtgtttaaatactcgccctgctcg |
136 |
Q |
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| T |
43458209 |
cgtaaacagagaaaacatgatatttgaccacagagtttggtctattgtgcatacgtcttcgactgcaatacaacttgtgtttaaatactcgccctgctcg |
43458308 |
T |
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| Q |
137 |
agcgacctgcctacttatcagtaaactatgagccgtaccaaacaaacnnnnnnnntataattctagctaaactttaaaccatagttgaagttatttagtt |
236 |
Q |
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| T |
43458309 |
agcgacctgcctacttatcagtaaactatgagccgtaccaaacaaacgaaaaaaatataattctagctaaactttaaaccgtagttgaagttatttagtt |
43458408 |
T |
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| Q |
237 |
ttatatttacttgtgt |
252 |
Q |
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| T |
43458409 |
ttatatttacttgtgt |
43458424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 4557146 - 4557178
Alignment:
| Q |
138 |
gcgacctgcctacttatcagtaaactatgagcc |
170 |
Q |
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| T |
4557146 |
gcgacctgcctacttatcaataaactatgagcc |
4557178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 34372551 - 34372583
Alignment:
| Q |
136 |
gagcgacctgcctacttatcagtaaactatgag |
168 |
Q |
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| T |
34372551 |
gagcgacctgccaacttatcagtaaactatgag |
34372583 |
T |
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