View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11299_low_1 (Length: 997)
Name: NF11299_low_1
Description: NF11299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11299_low_1 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 922; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 922; E-Value: 0
Query Start/End: Original strand, 8 - 997
Target Start/End: Original strand, 14175052 - 14176041
Alignment:
| Q |
8 |
tgcggtgaagaaggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaaatacca |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175052 |
tgcggcgaagaaggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaaatacca |
14175151 |
T |
|
| Q |
108 |
caaccccagtagttgatggggaagtggtgttgctttcagttgaagaagaagaatgtcatgttgcagattcatgtgttgaatgggtcattgactcagcagc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175152 |
caaccccagtagttgatggggaagtggtgttgctttctgttgaagaagaagaatgtcatgttgcagattcatgtgttgaatgggtcattgactcagcagc |
14175251 |
T |
|
| Q |
208 |
ttcttatcatgctacttccaacaaagaattctttacgatgtataaagtaggagactttggcaaagtaaagatgggcaataatagcattgcagatattgtt |
307 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175252 |
ttcttatcacgctacttccaataaagaattctttacaatgtacaaagtaggagactttggcaaagtaaagatgggcaataatagcattgcagatattgtt |
14175351 |
T |
|
| Q |
308 |
ggaattggtgatgtgtgtgttcaaaccaataccggttttacactaacactgaaggacgtgagacatgtgccagatttgcgtctaaatctaatctctgtcc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175352 |
ggaattggtgatgtgtgtgttcaaaccaataccggttttacactaacactgaaggacgtgcgacatgtgccagatttgcgtctaaatctaatctctgtcc |
14175451 |
T |
|
| Q |
408 |
atgctcttgatttagccggatttcaaaacaactttggtgatggaaaatggaaacttaccaaaggatcgttgatgattgctagaggcgccgtgtattcaac |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
14175452 |
atgctcttgatttagccggatttcaaaacaactttggtgatggaaaatggaaacttaccaaaggatcgttgatgattgctagaggcgtcgtgtattcgac |
14175551 |
T |
|
| Q |
508 |
gctttacaaaactcaagtcaagctgatcaaagatggcttgaatgcggtcgagaatgttactttgccagatttgtggcataaaacgctggctcatctaagt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
14175552 |
gctttacaaaactcaagtcaagctgatcaaagatggcttgaatgcggtcgagaatgttgctttgccagatttgtggcataaaaggctggctcatttaagt |
14175651 |
T |
|
| Q |
608 |
gaaaaaggattgcaaattttgtcaaggaagtccctcattccgtctgacaaaggtactaagttgaatccttgtgattactgtttgtttggcaagcaacata |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14175652 |
gaaaaaggattgcaaattttgtcaaggaagtccctcattccgtctgacaaaggtactaagttgaatccttgtgattattgtttgtttggcaagcaacata |
14175751 |
T |
|
| Q |
708 |
gagtttctttcagcagaacttcaaagctgaaagataataaattggatatggtgtattctgatgtgtgtggacccatggaagtggagactcttggtggtag |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175752 |
gagtttctttcagcagaacttcaaagctgaaagataataaattggatatggtgtattctgatgtgtgtggacccatggaagtggagactcttggtggtag |
14175851 |
T |
|
| Q |
808 |
cagatattttgtgacgtttattgatgatgcttccagaaaggtgagggggtacttccttaaaagtaaggatcaggtgtttcagtacttcaaaaggtttcat |
907 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175852 |
cagatattttgtgacgtttattgatgatgcttcaagaaaggtgtgggtgtacttccttaaaagtaaggatcaggtgtttcagtacttcaaaaggtttcat |
14175951 |
T |
|
| Q |
908 |
gcgatggtggagagatcgactggtaaatctttgaagtgtcttcgtgcggataatgggggtgaatatacttcccatgaatttaaaagttat |
997 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175952 |
gcgatggtggagagatcgactggtaaatctttgaagtgtcttcgttcggataatgggggtgaatatacttcccatgaatttaaaagttat |
14176041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 899; E-Value: 0
Query Start/End: Original strand, 8 - 997
Target Start/End: Complemental strand, 28610826 - 28609836
Alignment:
| Q |
8 |
tgcggtgaagaaggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaaatacca |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28610826 |
tgcggcgaagaaggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaaatacca |
28610727 |
T |
|
| Q |
108 |
caaccccagtagttgatggggaagtggtgttgctttcagttgaagaagaagaatgtcatgttgcagattcatgtgttgaatgggtcattgactcagcagc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28610726 |
caaccccagtagttgatggggaagtggtgttgctttctgttgaagaagaagaatgtcatcttgcagattcatgtgtttaatgggtcattgactcagcagc |
28610627 |
T |
|
| Q |
208 |
ttcttatcatgctacttccaacaaagaattctttacgatgtataaagtaggagactttggcaaagtaaagatgggcaataatagcattgcagatattgtt |
307 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28610626 |
ttcttatcacgctacttccaataaagaattctttacgatgtacaaagtaggagactttggcaaagtaaagatgggcaataatagcattgcagatattgtt |
28610527 |
T |
|
| Q |
308 |
ggaattggtgatgtgtgtgttcaaaccaataccggttttacactaacactgaaggacgtgagacatgtgccagatttgcgtctaaatctaatctctgtcc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28610526 |
ggaattggtgatgtgtgtgttcaaaccaataccgattttacactaacactgaaggacgtgcgacatgtgccagatttgcgtctaaatctaatctctgtcc |
28610427 |
T |
|
| Q |
408 |
atgctcttgatttagccggatttcaaaacaactttggtgatggaaaatggaaacttaccaaaggatcgttgatgattgctagaggcgccgtgtattcaac |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28610426 |
atgctcttgatttagccggatttcaaaacaactttggtgatggaaaatggaaacttaccaaaggatcgttgatgattgctagaggcgccgtgtattcgac |
28610327 |
T |
|
| Q |
508 |
gctttacaaaactcaagtcaagctgatcaaagatggcttgaatgcggtcgagaatgttactttgccagatttgtggcataaaacgctggctcatctaagt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
28610326 |
gctttacaaaactcaagtcaagctgatcaaagatggcttgaatgcggtcgagaatgttgctttgccagatttgtggcataaaaggctggctcatttaagt |
28610227 |
T |
|
| Q |
608 |
gaaaaaggattgcaaattttgtcaaggaagtccctcattccgtctgacaaaggtactaagttgaatccttgtgattactgtttgtttggcaagcaacata |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28610226 |
gaaaaaggattgcaaattttgtcaaggaagtccctcattccgtctggcaaaggtactaagttgaatccttgtgattattgtttgtttggcaagcaacata |
28610127 |
T |
|
| Q |
708 |
gagtttctttcagcagaacttcaaagctgaaagataataaattggatatggtgtattctgatgtgtgtggacccatggaagtggagactcttggtggtag |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28610126 |
gagtttctttcagcagaacttcaaagctgaaaggtaataaattggatatggtgtattctgatgtgtgtggacccatggaagtggagactcttggtggtag |
28610027 |
T |
|
| Q |
808 |
cagatattttgtgacg-tttattgatgatgcttccagaaaggtgagggggtacttccttaaaagtaaggatcaggtgtttcagtacttcaaaaggtttca |
906 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28610026 |
cagatattttgtgacgttttattgatgatgcttcaagaaaggtgtgggtgtacttccttaaaagtaaggatcgggtgtttcagtacttcaaaaggtttca |
28609927 |
T |
|
| Q |
907 |
tgcgatggtggagagatcgactggtaaatctttgaagtgtcttcgtgcggataatgggggtgaatatacttcccatgaatttaaaagttat |
997 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28609926 |
tgcgatggtggagagatcgactggtaaatctttgaagtgtcttcgttcggataatgggggtgaatatacttcccatgaatttaaaagttat |
28609836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 900; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 900; E-Value: 0
Query Start/End: Original strand, 14 - 997
Target Start/End: Original strand, 12931788 - 12932771
Alignment:
| Q |
14 |
gaagaaggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaaataccacaaccc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931788 |
gaagaaggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaagaccggaggaatcaaagaccagacgaagatgaaaataccacaaccc |
12931887 |
T |
|
| Q |
114 |
cagtagttgatggggaagtggtgttgctttcagttgaagaagaagaatgtcatgttgcagattcatgtgttgaatgggtcattgactcagcagcttctta |
213 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931888 |
cagtagttgatggggaagtggtgttgttttctgttgaagaagaagaatgtcatgttgcagattcatgtgttgaatgggtcattgactcagcagcttctta |
12931987 |
T |
|
| Q |
214 |
tcatgctacttccaacaaagaattctttacgatgtataaagtaggagactttggcaaagtaaagatgggcaataatagcattgcagatattgttggaatt |
313 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931988 |
tcacgctacttccaataaagaattctttacgatgtacaaagtaggagactttggcaaagtaaagatgggcaataatagcattgcagatattgttggaatt |
12932087 |
T |
|
| Q |
314 |
ggtgatgtgtgtgttcaaaccaataccggttttacactaacactgaaggacgtgagacatgtgccagatttgcgtctaaatctaatctctgtccatgctc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12932088 |
ggtgatgtgtgtgttcaaaccaataccggttttacactaacactgaagaacgtgcgacatgtgccagatttgcgtctaaatctaatctctgtccatgctc |
12932187 |
T |
|
| Q |
414 |
ttgatttagccggatttcaaaacaactttggtgatggaaaatggaaacttaccaaaggatcgttgatgattgctagaggcgccgtgtattcaacgcttta |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
12932188 |
ttgatttagccggatttcaaaacaactttggtgatggaaaatggaaacttaccaaaggatcgttgatgattgctagaggcgtcgtgtattcgacgcttta |
12932287 |
T |
|
| Q |
514 |
caaaactcaagtcaagctgatcaaagatggcttgaatgcggtcgagaatgttactttgccagatttgtggcataaaacgctggctcatctaagtgaaaaa |
613 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
12932288 |
caaaactcaagtcaagctgatcaaagatggcttgaatgcggccgagaatgttgctttggcagatttgtggcataaaaggctggctcatttaagtgaaaaa |
12932387 |
T |
|
| Q |
614 |
ggattgcaaattttgtcaaggaagtccctcattccgtctgacaaaggtactaagttgaatccttgtgattactgtttgtttggcaagcaacatagagttt |
713 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12932388 |
ggattgcaaattttgtcaaggaagtccctcattccgtctgacaaaggtactaagttgaatccttgtgattattgtttgtttggcaagcaacatagagttt |
12932487 |
T |
|
| Q |
714 |
ctttcagcagaacttcaaagctgaaagataataaattggatatggtgtattctgatgtgtgtggacccatggaagtggagactcttggtggtagcagata |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12932488 |
ctttcagcagaacttcaaagctgaaagataataaattggatatggtgtattctgatgtgtgtggacccatggaagtggagactcttggtggtagcagata |
12932587 |
T |
|
| Q |
814 |
ttttgtgacgtttattgatgatgcttccagaaaggtgagggggtacttccttaaaagtaaggatcaggtgtttcagtacttcaaaaggtttcatgcgatg |
913 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12932588 |
ttttgtgacgtttattgatgatgcttcaagaaaggtgtgggtgtacttccttaaaagtaaggatcaggtgtttcagtaattcaaaaggtttcatgcgatg |
12932687 |
T |
|
| Q |
914 |
gtggagagatcgactggtaaatctttgaagtgtcttcgtgcggataatgggggtgaatatacttcccatgaatttaaaagttat |
997 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12932688 |
gtggagagatcgactggtaaatctttgaagtgtcttcgttcggataatgggggtgaatatacttcccatgaatttaaaagttat |
12932771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 594 - 997
Target Start/End: Original strand, 15298159 - 15298561
Alignment:
| Q |
594 |
tggctcatctaagtgaaaaaggattgcaaattttgtcaaggaagtccctcattccgtctgacaaaggtactaagttgaatccttgtgattactgtttgtt |
693 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15298159 |
tggctcatctaagtgaaaaaggattgcaaattttgtcaaggaagtccctcattccatctgaaaaaggtactaagttgaatccttgtgcttactgtttgtt |
15298258 |
T |
|
| Q |
694 |
tggcaagcaacatagagtttctttcagcagaacttcaaagctgaaagataataaattggatatggtgtattctgatgtgtgtggacccatggaagtggag |
793 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| |
|
|
| T |
15298259 |
tagcaagcaacatagagtttctttcagcagaacttcaaagctgaaagataataaattggatatggggtattctaatgtgtgtggaccaatggaagtggag |
15298358 |
T |
|
| Q |
794 |
actcttggtggtagcagatattttgtgacgtttattgatgatgcttccagaaaggtgagggggtacttccttaaaagtaaggatcaggtgtttcagtact |
893 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15298359 |
ac-cttggtggtagcagatattttgtgacgtttattaatgatacttccagaaaggtgtgggtgtacttccttaaaagtaaggatcaagtgtttcagtact |
15298457 |
T |
|
| Q |
894 |
tcaaaaggtttcatgcgatggtggagagatcgactggtaaatctttgaagtgtcttcgtgcggataatgggggtgaatatacttcccatgaatttaaaag |
993 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15298458 |
tcaaaaggtttcatgcgatggtggagagagcgactggtaaatctttgaagtgtcttcattcggataatgggggtgaatatacttcccatgaatttaaaag |
15298557 |
T |
|
| Q |
994 |
ttat |
997 |
Q |
| |
|
|||| |
|
|
| T |
15298558 |
ttat |
15298561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 414 - 590
Target Start/End: Original strand, 15290614 - 15290789
Alignment:
| Q |
414 |
ttgatttagccggatttcaaaacaactttggtgatggaaaatggaaacttaccaaaggatcgttgatgattgctagaggcgccgtgtattcaacgcttta |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| || ||||| |
|
|
| T |
15290614 |
ttgatttagccggatttcaaaacaactttggtgatggaaaatggaaacttaccaaaggatcgttgatggttactagaggcgccgtgtattcgacacttta |
15290713 |
T |
|
| Q |
514 |
caaaactcaagtcaagctgatcaaagatggcttgaatgcggtcgagaatgttactttgccagatttgtggcataaaa |
590 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||| |||| |||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
15290714 |
caaaactcaagtcaagttgatcaaagagggcttg-atgcagtcgagaatgttgctttgccaaatttgtggcataaaa |
15290789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 15 - 712
Target Start/End: Complemental strand, 24874699 - 24874000
Alignment:
| Q |
15 |
aagaaggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaaataccacaacccc |
114 |
Q |
| |
|
||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
24874699 |
aagaaggtcacataaaaagaaattgaaaacaatggaagagcaaagaaaagaaggataagaggaatcaaatgccatacgaagatgaaaataccacaacctt |
24874600 |
T |
|
| Q |
115 |
agtagttgatggggaagtggtgttgctttcagttgaagaagaagaatgtcatgttgcagattcatgtgttgaatgggtcattgactcagcagcttcttat |
214 |
Q |
| |
|
||||| |||||||||| || ||||||||| |||||| |||||||||||| | ||| ||||||||||||| ||||||| ||||||| ||| |||||||| |
|
|
| T |
24874599 |
agtaggtgatggggaaatgatgttgctttttgttgaaaaagaagaatgtcgtattgtagattcatgtgttatatgggtcgttgactctgcatcttcttat |
24874500 |
T |
|
| Q |
215 |
catgctacttccaacaaagaattctttacgatgtataaagtaggagact---ttggcaaagtaaagatgggcaataatagcattgcagatattgttggaa |
311 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||| ||||||||||||| |||||||||| ||||| | ||| |||| |||| |||||||||||||| |
|
|
| T |
24874499 |
catgccacttccaacaaagaattctttgtgatgtacaaagtaggagactttgttggcaaagtcaagatagacaacaataatattgtagatattgttggaa |
24874400 |
T |
|
| Q |
312 |
ttggtgatgtgtgtgttcaaaccaataccggttttacactaacactgaaggacgtgagacatgtgccagatttgcgtctaaatctaatctctgtccatgc |
411 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||| |||| |||||| ||||||||| ||||||||| |||||||||||||||| ||||||| |||||||| |
|
|
| T |
24874399 |
ttaatgatgtgtgtgttcaaaccaatatcggtttaacaccaacactaaaggacgtgcgacatgtgctagatttgcgtctaaatataatctccgtccatgc |
24874300 |
T |
|
| Q |
412 |
tcttgatttagccggatttcaaaacaactttggtgatggaaaatggaaacttaccaaaggatcgttgatgattgctagaggcgccgtgtattcaacgctt |
511 |
Q |
| |
|
||||| |||||| ||| ||||||||||||||||||||||||| | || || |||||||||| | |||||| || |||||| || |||||| | | |||| |
|
|
| T |
24874299 |
tcttg-tttagctggacttcaaaacaactttggtgatggaaagt-gatacctaccaaaggagcattgatggttactagagacgatgtgtatccgaggctt |
24874202 |
T |
|
| Q |
512 |
tacaaaactcaagtcaagctgatcaaagatggcttgaatgcggtcgagaatgttactttgccagatttgtggcataaaacgctggctcatctaagtg-aa |
610 |
Q |
| |
|
||||||| |||||| ||| ||||||||||| ||| ||||| |||| |||||||| ||||| |||||||||||||||||| | ||||||| ||||||| || |
|
|
| T |
24874201 |
tacaaaaatcaagttaagttgatcaaagattgctcgaatgtggtcaagaatgttgctttgtcagatttgtggcataaaaggatggctcacctaagtgaaa |
24874102 |
T |
|
| Q |
611 |
aaaggattgcaaattttgtcaaggaagtccctcattccgtctgacaaaggtactaagttgaatccttgtgattactgtttgtttggcaagcaacatagag |
710 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||| || | ||| ||||| |||||||||||||| | ||||| ||||||||| ||||||||||||| |
|
|
| T |
24874101 |
aaaagattgcaaattctgtcaaggaagtccctcgttgcatctcacaaatgtactaagttgaattatcatgattgttgtttgtttttgaagcaacatagag |
24874002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 722 - 869
Target Start/End: Complemental strand, 24872161 - 24872015
Alignment:
| Q |
722 |
agaacttcaaagctgaaagataataaattggatatggtgtattctgatgtgtgtggacccatggaagtggagactcttggtggtagcagatattttgtga |
821 |
Q |
| |
|
||||| |||||| ||||| |||||| |||| ||||||||||||||| || ||| |||| ||||||||||||||||||| ||||||| | ||||| ||| |
|
|
| T |
24872161 |
agaacctcaaagttgaaa-ataatatattgaatatggtgtattctgctgcgtgcggactcatggaagtggagactcttcgtggtagtatgtatttactga |
24872063 |
T |
|
| Q |
822 |
cgtttattgatgatgcttccagaaaggtgagggggtacttccttaaaa |
869 |
Q |
| |
|
| ||||| ||| |||||| | |||||||| ||| |||||||||||||| |
|
|
| T |
24872062 |
catttatcgataatgctttcggaaaggtgtgggtgtacttccttaaaa |
24872015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 220; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 406 - 992
Target Start/End: Complemental strand, 38996083 - 38995498
Alignment:
| Q |
406 |
ccatgctcttgatttagccggatttcaaaacaactttggtgatggaaaatggaaacttaccaaaggatcgttg---atgattgctagaggcgccgtgtat |
502 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||| || ||| |||||| ||||| ||||||| |
|
|
| T |
38996083 |
ccatgctcttgatttagctaaatttcaaaacaattttggtgatggaaaatggaaacttatcaaaggatctttttatatggttgctaaaggcgtcgtgtat |
38995984 |
T |
|
| Q |
503 |
tcaacgctttacaaaactcaagtcaagctgatcaaagatggcttgaatgcggtcgagaatgttactttgccagatttgtggcataaaacgctggctcatc |
602 |
Q |
| |
|
|| ||| | || |||||||||||||||||||||||||| |||||||||||||||||||||| | |||| ||| |||| ||||||||| ||||||||||| |
|
|
| T |
38995983 |
tcgacgttgtataaaactcaagtcaagctgatcaaagacggcttgaatgcggtcgagaatgatgcttttccaaattttcggcataaaaggctggctcatc |
38995884 |
T |
|
| Q |
603 |
taagtgaaaaaggattgcaaa-ttttgtcaaggaagtccctcattccgtctgacaaaggtactaagttgaatccttgtgattactgtttgtttggcaagc |
701 |
Q |
| |
|
|| ||||||||||||| |||| |||| ||||||||||| |||| | |||||||||||| ||| ||||||||||||||||| | |||||||||| || |
|
|
| T |
38995883 |
tatgtgaaaaaggattacaaatttttttcaaggaagtctttcatcctacctgacaaaggtaataaattgaatccttgtgattattttttgtttggcgaga |
38995784 |
T |
|
| Q |
702 |
aacatagagtttctttcagcagaacttcaaagctgaaagataataaattggatatggtgtattctgatgtgtgtggacccatggaagtggagactcttgg |
801 |
Q |
| |
|
|||||| ||| || || | | ||| |||||||| |||||||||| || |||||| |||||| | |||||||| |||| ||||||||||| |||||||| |
|
|
| T |
38995783 |
aacataaagtatcgttttgtaaaacatcaaagcttaaagataatatatcagatatgatgtattataatgtgtgtagaccaatggaagtggatactcttgg |
38995684 |
T |
|
| Q |
802 |
tggtagcagatattttgtgacgtttattgatgatgcttccagaaaggtgagggggtacttccttaaaagtaaggatcaggtgtttcagtacttcaaaagg |
901 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||| || |||| || |||||||| ||||| |||| || ||||| || ||||||||| |
|
|
| T |
38995683 |
tggtagcaaatattttgtgatgtttattgatgatgcttccacaatggtgcggttgtacttccataaaatcaagg-cgagatgttttaggacttcaaaata |
38995585 |
T |
|
| Q |
902 |
tttcatgcgatggtggagagatcgactggtaaatctttgaagtgtcttcgtgcggataatgggggtgaatatacttcccatgaatttaaaa |
992 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||| ||||||||||| || || |||||||||||||||| || |||||||||||||||| |
|
|
| T |
38995584 |
tttcatatgatggtggagagagcgactagtaaacctttgaagtgtatttgttcggataatgggggtga----acatcccatgaatttaaaa |
38995498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 3 - 338
Target Start/End: Complemental strand, 38996436 - 38996099
Alignment:
| Q |
3 |
atcaatgcggtgaagaaggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaaa |
102 |
Q |
| |
|
|||| ||||| | ||||| ||||||| |||||||||| |||||||||||||| ||| |||| |||||| ||||| |||| ||| | ||||||||||| |
|
|
| T |
38996436 |
atcactgcggcggagaagatcacatccaaagaaattgtaaatcttggaagaaaaaataaaataaggacaataggaaccaaatacctaaggaagatgaaaa |
38996337 |
T |
|
| Q |
103 |
taccacaacccc-agtagttgatggggaagtggtgttgctttcagttgaagaagaagaatgtcatgttgcagattcatgtgttgaatgggtcattgactc |
201 |
Q |
| |
|
|||||||||||| | | || |||||||||||| |||||||| ||||||||||||||||| ||| |||||| ||||| |||||||||| | |||||||| |
|
|
| T |
38996336 |
taccacaacccccaacacttaatggggaagtggcgttgctttatgttgaagaagaagaatgccatattgcagtttcatttgttgaatggataattgactc |
38996237 |
T |
|
| Q |
202 |
agcagcttcttatcatgctacttccaacaaa-gaattctttacgatgtataaagtaggagactttggcaaagtaaagatgggcaataatagcattgcaga |
300 |
Q |
| |
|
| || ||||| |||||| |||||||||||| ||||||||||||||||| |||| ||||||||||| ||||||||| ||||| |||| ||||||| || | |
|
|
| T |
38996236 |
aacatcttctaatcatgtcacttccaacaaaagaattctttacgatgtacaaagcaggagactttgacaaagtaaatatgggaaatagtagcattacaaa |
38996137 |
T |
|
| Q |
301 |
tattgttggaattggtgatgtgtgtgttcaaaccaata |
338 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38996136 |
tattgttggaattggtgatgtgtgtgtttaaaccaata |
38996099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University