View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11299_low_13 (Length: 250)
Name: NF11299_low_13
Description: NF11299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11299_low_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 33879741 - 33879982
Alignment:
| Q |
9 |
gagatgaacatgtcctcgttcacgaaagtgttccttaacaaatacttcaaaattctttggcggtgtccgaatgatcaaatatgcagcgtgacacgtttta |
108 |
Q |
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| T |
33879741 |
gagaagaacatgtcctcgttcacgaaagtgttccttaacaaatacttcaaaattctttggcggtgtccgaatgatcaaatatgcagcgtgacacgtttta |
33879840 |
T |
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| Q |
109 |
acaaaaacatcttcattgtatgtaaatgacttggtttcatggaaagaacgtttgaatatacggtaaaaaggctcgttaaaaagtgggcactcgttaagta |
208 |
Q |
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| T |
33879841 |
acaaaaacatcttcattgtatgtaaatgacttggtttcatggaaagaacgtttgaatatacggtaaaaaggctcgttaaaaagtgggcactcgttaagta |
33879940 |
T |
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| Q |
209 |
caagtgcttgaatagagaccaaaagctgaagaagtgtagacc |
250 |
Q |
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| T |
33879941 |
caagtgcttgaatagagaccaaaagctgaagaagtgtagacc |
33879982 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 16665898 - 16665832
Alignment:
| Q |
14 |
gaacatgtcctcgttcacgaaagtgttccttaacaaatacttcaaaattctttggcggtgtccgaat |
80 |
Q |
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| T |
16665898 |
gaacatgacctctttcacgaaagtgttccttcacaaaaacctcaaaattcttaggtggtttccgaat |
16665832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 17640268 - 17640202
Alignment:
| Q |
14 |
gaacatgtcctcgttcacgaaagtgttccttaacaaatacttcaaaattctttggcggtgtccgaat |
80 |
Q |
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| T |
17640268 |
gaacatgacctctttcacgaaagtgttccttcacaaaaacctcaaaattcttaggtggtttccgaat |
17640202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 16684298 - 16684234
Alignment:
| Q |
16 |
acatgtcctcgttcacgaaagtgttccttaacaaatacttcaaaattctttggcggtgtccgaat |
80 |
Q |
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| T |
16684298 |
acatgacctctttcacgaaagtgttccttcacaaaatcctcaaaattcttaggtggtttccgaat |
16684234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 17658534 - 17658470
Alignment:
| Q |
16 |
acatgtcctcgttcacgaaagtgttccttaacaaatacttcaaaattctttggcggtgtccgaat |
80 |
Q |
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| T |
17658534 |
acatgacctctttcacgaaagtgttccttcacaaaatcctcaaaattcttaggtggtttccgaat |
17658470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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