View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11299_low_3 (Length: 555)
Name: NF11299_low_3
Description: NF11299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11299_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 11 - 540
Target Start/End: Complemental strand, 5388720 - 5388203
Alignment:
| Q |
11 |
cagagatgtgaccaacagagtaaaccaaaaccataacagtgaggccccaaacaattgagatcccaggatgtgttactactttgtcattgtcaagattcac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5388720 |
cagagatgtgaccaacagagtaaaccaaaaccataacagtgaggccccaaacaattgagatcccaggatgtgttactactttgtcattgtcaagattcac |
5388621 |
T |
|
| Q |
111 |
cacaacagcagcacaccctgcaaatatcaagaagtacgtccctaccacctctgctaccaactacattcaacataatacaaatcaaaccaatttattttaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5388620 |
cacaacagcagcacaccctgcaaatatcaagaagtacgtccctaccacctctgctaccaactacattcaacataatacaaatcaaaccaatttattttaa |
5388521 |
T |
|
| Q |
211 |
cattgattccatatttaaattcacaacaattaatttaatctctaaagtattttttctctctaattaaatctttaaagcatataaaagtaataaacatttt |
310 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5388520 |
cattgattccatatttaaattcacaataattaatttaatctctaaagtattttttctctctaattaaatctttaaagcatataaaagtaataaacatttt |
5388421 |
T |
|
| Q |
311 |
taaagtatatgaaattcatcactttaatatttgttattaaaatattaggaattaatataataaactttcataaactttagagattaatgctttaaaaata |
410 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5388420 |
taaagtatatgaaattcgtcactttaatctttgttattaaaataataggaattaatataataaa----------ctttagagattaatgctttaaaaata |
5388331 |
T |
|
| Q |
411 |
aaattaatgactgatattttagagagtaaattcatattcatagnnnnnnnnngagaaaaataagttctatctagagtggtttaggagatacataccttct |
510 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5388330 |
aaattaatgactgatattttagagagtaaattcatattcatagttattatc--aacaaaataagttctatgtagagtggtttaggagatacataccttct |
5388233 |
T |
|
| Q |
511 |
gcaaaaggggcacatagtcttggatgcatg |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
5388232 |
gcaaaaggggcacatagtcttggatgcatg |
5388203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 5402529 - 5402346
Alignment:
| Q |
11 |
cagagatgtgaccaacagagtaaaccaaaaccataacagtgaggccccaaacaattgagatcccaggatgtgttactactttgtcattgtcaagattcac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5402529 |
cagagatgtgaccaacagagtaaaccaaaaccataacagtgaggccccaaacaattgagatcccaggatgtgttactactttgtcattgtcaagattcac |
5402430 |
T |
|
| Q |
111 |
cacaacagcagcacaccctgcaaatatcaagaagtacgtccctaccacctctgctaccaactacattcaacataatacaaatca |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
5402429 |
cacaacagcagcacaccctgcaaatatcaagaagtacgtccctaccacctctgctaccaactacatccaacataatacaaatca |
5402346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 240 - 540
Target Start/End: Complemental strand, 5402326 - 5402013
Alignment:
| Q |
240 |
ttaatttaatctctaaagtattttttctctctaattaaatctttaaagcatataaaagtaataaacatttttaaagtatatgaaattcatcactttaata |
339 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
5402326 |
ttaatttaatctctaaagtattttt-ctctctaattcaatctctaaagcatataaaagtaataaacatttttaaagtatatgaaattcgtcactttaatc |
5402228 |
T |
|
| Q |
340 |
tttgttattaaaatattaggaattaatataataaactttcataaactttagagatta----------------atgctttaaaaataaaattaatgactg |
423 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||| || |||||| || | ||| |||||||||||||| ||| | |
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|
| T |
5402227 |
tttgttattaaagtattaggaattaatataat-aactttcatataccatagagactatgacaacgaattttatttacttcaaaaataaaattaaagaccg |
5402129 |
T |
|
| Q |
424 |
atattttagagagtaaattcatattcatagnnnnnnnnngagaaaaataagttctatctagagtggtttaggagatacataccttctgcaaaaggggcac |
523 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | ||||| ||||| ||| |||||||||||||||||||| |||||||||||||| ||||| |
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| T |
5402128 |
atattttagagattaaattcatattcatagttattatca-acaaaaaaaagttatatgcagagtggtttaggagatacacaccttctgcaaaagaggcac |
5402030 |
T |
|
| Q |
524 |
atagtcttggatgcatg |
540 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
5402029 |
atagtcttggatgcatg |
5402013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 182
Target Start/End: Complemental strand, 5396829 - 5396658
Alignment:
| Q |
11 |
cagagatgtgaccaacagagtaaaccaaaaccataacagtgaggccccaaacaattgagatcccaggatgtgttactactttgtcattgtcaagattcac |
110 |
Q |
| |
|
||||||| ||||| | ||| || || || |||||||||| || |||||||||||||| || |||||| |||| || ||||| ||||||| ||| ||||| |
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|
| T |
5396829 |
cagagatatgacctatagaatagactaataccataacagcaagtccccaaacaattgatattccaggaagtgtcacaactttatcattgttaaggttcac |
5396730 |
T |
|
| Q |
111 |
cacaacagcagcacaccctgcaaatatcaagaagtacgtccctaccacctctgctaccaactacattcaaca |
182 |
Q |
| |
|
||| ||||||||||| || ||||||||||||||| | || || ||||| |||||||||||||| |||||||| |
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|
| T |
5396729 |
caccacagcagcacatccagcaaatatcaagaagaatgttcccaccacttctgctaccaactatattcaaca |
5396658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 5415264 - 5415106
Alignment:
| Q |
11 |
cagagatgtgaccaacagagtaaaccaaaaccataacagtgaggccccaaacaattgagatcccaggatgtgttactactttgtcattgtcaagattcac |
110 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||| |||||| ||| || || |||||| |||||||||| | ||||||| ||||||||| |
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|
| T |
5415264 |
cagaaatgtgaccaacagagtaaatcaaaaccataacagtgaatccccaagcaaatgcaattccaggaagtgttactacatgatcattgttaagattcac |
5415165 |
T |
|
| Q |
111 |
cacaacagcagcacaccctgcaaatatcaagaagtacgtccctaccacctctgctacca |
169 |
Q |
| |
|
| |||||||||||| || |||||||||| | ||| || || ||||| |||||||||| |
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|
| T |
5415164 |
aataacagcagcacaacccgcaaatatcatcatgtatgttcccaccacttctgctacca |
5415106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 182
Target Start/End: Original strand, 5407993 - 5408120
Alignment:
| Q |
55 |
ccccaaacaattgagatcccaggatgtgttactactttgtcattgtcaagattcaccacaacagcagcacaccctgcaaatatcaagaagtacgtcccta |
154 |
Q |
| |
|
||||||||||||| || |||||| |||| || ||||| ||||||| ||| |||||||| |||| | |||| || ||||||||||||||| | || | | |
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|
| T |
5407993 |
ccccaaacaattgcaattccaggaagtgtcacaactttatcattgttaaggttcaccaccacagaaccacatccagcaaatatcaagaagaatgttcgca |
5408092 |
T |
|
| Q |
155 |
ccacctctgctaccaactacattcaaca |
182 |
Q |
| |
|
|||| |||||||||||||| | |||||| |
|
|
| T |
5408093 |
ccacttctgctaccaactatactcaaca |
5408120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 11 - 172
Target Start/End: Complemental strand, 36267715 - 36267554
Alignment:
| Q |
11 |
cagagatgtgaccaacagagtaaaccaaaaccataacagtgaggccccaaacaattgagatcccaggatgtgttactactttgtcattgtcaagattcac |
110 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| |||| || |||||||||||||| || |||||| ||||||| || || ||||||| ||||| |
|
|
| T |
36267715 |
cagagatgtgaccaagagagtaaaccagcaccatcacagcaagtccccaaacaattgaaattccaggaagtgttacaacattttcattgttcttgttcac |
36267616 |
T |
|
| Q |
111 |
cacaacagcagcacaccctgcaaatatcaagaagtacgtccctaccacctctgctaccaact |
172 |
Q |
| |
|
|| || | |||||| || |||||||||||||| || || |||| |||||| |||||||||| |
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|
| T |
36267615 |
caacaccgaagcacaaccggcaaatatcaagaaatatgtgcctatcacctcagctaccaact |
36267554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 36262554 - 36262464
Alignment:
| Q |
11 |
cagagatgtgaccaacagagtaaaccaaaaccataacagtgaggccccaaacaattgagatcccaggatgtgttactactttgtcattgtc |
101 |
Q |
| |
|
||||||| ||||||| |||||||| ||| |||| | ||| || ||||||||||||| ||||| ||| |||||||||| ||||| ||||| |
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|
| T |
36262554 |
cagagatatgaccaagagagtaaatcaataccaacaaagttagtccccaaacaattgcaatccctggaagtgttactacgttgtcgttgtc |
36262464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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