View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11299_low_5 (Length: 395)
Name: NF11299_low_5
Description: NF11299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11299_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 13 - 380
Target Start/End: Original strand, 32365495 - 32365862
Alignment:
| Q |
13 |
gaacctgtgattcttcatctatctcacaatcatagtccttaccaagtggactaagaatagtgtacaatccagctattgccggtgctgcaattgcaatgga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365495 |
gaacctgtgattcttcatctatctcacaatcatagtccttaccaagtggactaagaatagtgtacaatccagctattgccggtgctgcaattgcaatgga |
32365594 |
T |
|
| Q |
113 |
tatagtaattccaactccaatggctggtctctcagatcttttatatcctaaatttagactacaaagtgcatattgagcaaaacagttaacatgaaggaga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365595 |
tatagtaattccaactccaatggctggtctctcagatcttttatatcctaaatttagactacaaagtgcatattgagcaaaacagttaacatgaaggaga |
32365694 |
T |
|
| Q |
213 |
ataacaactaccatcatatgtgcccattcatgaggcttataagtaccatttttgcagtaaatcatcctaagtgcagaaacatcatttggtgtccatctac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365695 |
ataacaactaccatcatatgtgcccattcatgaggcttataagtaccatttttgcagtaaatcatcctaagtgcagaaacatcatttggtgtccatctac |
32365794 |
T |
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| Q |
313 |
acaaaagaacaagatggtggaacctctttggatgaagatacaaacacattagtgtaaagagagcattt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365795 |
acaaaagaacaagatggtggaacctctttggatgaagatacaaacacattagtgtaaagagagcattt |
32365862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 380
Target Start/End: Original strand, 32377180 - 32377547
Alignment:
| Q |
13 |
gaacctgtgattcttcatctatctcacaatcatagtccttaccaagtggactaagaatagtgtacaatccagctattgccggtgctgcaattgcaatgga |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||| ||| |
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| T |
32377180 |
gaacctgtgattcttcatctatctcacaatcatagtccttaccaagtggactaagaataatgtacaatccagctgttgccggtgccgcaattgcaacgga |
32377279 |
T |
|
| Q |
113 |
tatagtaattccaactccaatggctggtctctcagatcttttatatcctaaatttagactacaaagtgcatattgagcaaaacagttaacatgaaggaga |
212 |
Q |
| |
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||| | |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32377280 |
tatggcaattccaagttcaatggctggtctctcagatcttttatatcctaaatttagactacaaactgcatattgagcaaaacagttaacatgaaggaga |
32377379 |
T |
|
| Q |
213 |
ataacaactaccatcatatgtgcccattcatgaggcttataagtaccatttttgcagtaaatcatcctaagtgcagaaacatcatttggtgtccatctac |
312 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||||| || || |||||||| | ||||||||| |
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| T |
32377380 |
ataacaactaccatcatatgtgcccattcacgaggcttagaagtaccatttttgcagaaaatcattctaagtgtagtaatatcatttgatctccatctac |
32377479 |
T |
|
| Q |
313 |
acaaaagaacaagatggtggaacctctttggatgaagatacaaacacattagtgtaaagagagcattt |
380 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
32377480 |
acaaaagaacaagatggtggaacctctttggatgattatacaaagacattagtgtaaagagagcattt |
32377547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 120 - 271
Target Start/End: Original strand, 36122244 - 36122395
Alignment:
| Q |
120 |
attccaactccaatggctggtctctcagatcttttatatcctaaatttagactacaaagtgcatattgagcaaaacagttaacatgaaggagaataacaa |
219 |
Q |
| |
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|||||||| |||||||| || | ||||||||||||||| ||||| ||||||| ||||||||||| ||||| |||||||| |||||| |||||| || | |
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| T |
36122244 |
attccaacaccaatggccgggcgctcagatcttttataacctaagtttagaccgcaaagtgcatactgagcgaaacagttcacatgaccgagaattacca |
36122343 |
T |
|
| Q |
220 |
ctaccatcatatgtgcccattcatgaggcttataagtaccatttttgcagta |
271 |
Q |
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||||||| || ||| ||||||||||||||||||||| ||||| |||||||| |
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| T |
36122344 |
ctaccattatgtgtttccattcatgaggcttataagttccattcttgcagta |
36122395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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