View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1129_high_1 (Length: 945)
Name: NF1129_high_1
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_high_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 501 - 937
Target Start/End: Original strand, 46922027 - 46922463
Alignment:
| Q |
501 |
attgatgaattttgcagggtgatcaagcatcaattattgggggtgctattaactttgttaagaagcttgagcagaagctacaatttcttggtgtacaaaa |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46922027 |
attgatgaattttgcagggtgatcaagcatcaattattgggggtgctattaactttgttaagaagcttgagcagaagctacaatttcttggtgtacaaaa |
46922126 |
T |
|
| Q |
601 |
acaaaaggagggtaaatttgatactattgttgaaaataaaaacaagcccttttctgaattttttacctttccacaatactcaacaagtgacggtgtgtgt |
700 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46922127 |
acaaaaggagggtaaatttgatactattgttgaaaataaaaacaagcccttttctgaattttttacctttccacaatactcaacaagtgacggtgtgtgt |
46922226 |
T |
|
| Q |
701 |
gagagttctgagacaaaaatgggtggtgaggttcaatctcgcaatattgctgatattgaagtgacaatggttgaaagccatgcaaatctcaaaataagaa |
800 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46922227 |
gagagttctgagacaaaaatgggtggtgaggttcaatctcgcaatattgctgatattgaagttacaatggttgaaagccatgcaaatctcaaaataagaa |
46922326 |
T |
|
| Q |
801 |
caaagaaaagaccaaaacagctcttgaagatggtttctagtttgcatggattgtgtctcacaatcttgcaccttaatgtcactacagctgatgaatttgt |
900 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46922327 |
caaagaaaagaccaaaacagctcttgaagatggtttctagtttgcatggattgtgtctcacaatcttgcaccttaatgtcactacagctgatgaatttgt |
46922426 |
T |
|
| Q |
901 |
cttctattctctcagcgttaaggtaattgtctgtggt |
937 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
46922427 |
cttctattctctcagcgttaaggtaattgtctgtggt |
46922463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 29 - 437
Target Start/End: Original strand, 46921543 - 46921945
Alignment:
| Q |
29 |
accaactctactatatccacaagaccctttcacctatggattcaacaaagaccactacaattacaaccttttaacagattctgaagcaaactttgactac |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46921543 |
accaactctactatatccacaagaccctttcacctatggattcaacaaagaccactacaattacaaccttttaacagattctgaagcaaactttgactac |
46921642 |
T |
|
| Q |
129 |
accaatttcaaccttcaaaatgaagaacaaggttttgtttctacttttctcaagaaccaacaaacagagaattatccttatgaaaattggagtaacaatt |
228 |
Q |
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| T |
46921643 |
accaatttcaaccttcaaaatgaagaacaaggttttgtttctacttttctcaagaaccaacaaacagagaattatccttatgaaaattggagtaacaatt |
46921742 |
T |
|
| Q |
229 |
gtccatctttagatagttcaatttcaactcgttctcgttctcgttccaagaaacgcagagtcaaaacaagtaagaataaggaagaaattgagaatcagag |
328 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46921743 |
gtccatctttagatagttcaatttcaa------ctcgttctcgttccaagaaacgcagagtcaaaacaagtaagaataaggaagaaattgagaatcagag |
46921836 |
T |
|
| Q |
329 |
aatgactcacattgctgtagaacgcaacaggagaaagcaaatgaatgagtatctctctgttcttcgatctctcatacctgaatcctacgtccatagggta |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||| |
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| T |
46921837 |
aatgactcacattgctgtagaacgcaacaggagaaagcaaatgaatgagtatctctctgttcttagatctctcatgcctgaatcctacgtccaaagggta |
46921936 |
T |
|
| Q |
429 |
cttctatag |
437 |
Q |
| |
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||||||||| |
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|
| T |
46921937 |
cttctatag |
46921945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 1e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 309 - 400
Target Start/End: Complemental strand, 36676508 - 36676417
Alignment:
| Q |
309 |
gaagaaattgagaatcagagaatgactcacattgctgtagaacgcaacaggagaaagcaaatgaatgagtatctctctgttcttcgatctct |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || || || || |||||||| |||||||||||||| ||| ||||||| ||||| |
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| T |
36676508 |
gaagaaattgagaatcagagaatgactcacattgctgttgagcgtaatagaagaaagcagatgaatgagtatctttctattcttcgctctct |
36676417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 746 - 846
Target Start/End: Complemental strand, 36675915 - 36675815
Alignment:
| Q |
746 |
attgctgatattgaagtgacaatggttgaaagccatgcaaatctcaaaataagaacaaagaaaagaccaaaacagctcttgaagatggtttctagtttgc |
845 |
Q |
| |
|
|||||||| || |||||||||||||| |||| |||||||||||| ||||||||| ||| || || ||||| ||||||||||| || || ||| |||||| |
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| T |
36675915 |
attgctgacatagaagtgacaatggtggaaaaccatgcaaatcttaaaataagatcaagaaagaggccaaagcagctcttgaaaattgtatctggtttgc |
36675816 |
T |
|
| Q |
846 |
a |
846 |
Q |
| |
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| |
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| T |
36675815 |
a |
36675815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 513 - 593
Target Start/End: Complemental strand, 36676160 - 36676080
Alignment:
| Q |
513 |
tgcagggtgatcaagcatcaattattgggggtgctattaactttgttaagaagcttgagcagaagctacaatttcttggtg |
593 |
Q |
| |
|
|||||||||||||||| || || ||||| || ||||||||||||||||| |||||||||| ||| | || |||||||||| |
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|
| T |
36676160 |
tgcagggtgatcaagcttctataattggaggagctattaactttgttaaagagcttgagcacaagtttcattttcttggtg |
36676080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 299 - 403
Target Start/End: Complemental strand, 8873402 - 8873298
Alignment:
| Q |
299 |
taagaataaggaagaaattgagaatcagagaatgactcacattgctgtagaacgcaacaggagaaagcaaatgaatgagtatctctctgttcttcgatct |
398 |
Q |
| |
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||||||||||||||| |||||||||| |||||||| ||||||||||| ||||| || |||||| ||||||||||| ||||| ||||||| | ||| |
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| T |
8873402 |
taagaataaggaagatgttgagaatcaaagaatgacacacattgctgttgaacgtaataggagacgccaaatgaatgatcatctcagtgttcttaggtct |
8873303 |
T |
|
| Q |
399 |
ctcat |
403 |
Q |
| |
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||||| |
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|
| T |
8873302 |
ctcat |
8873298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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