View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_high_10 (Length: 579)
Name: NF1129_high_10
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 8 - 388
Target Start/End: Original strand, 14811296 - 14811675
Alignment:
| Q |
8 |
ccaacaatatcttgaaaaacggaatcacagtgagatcagagactacataaaatgtaaatgaacagtaagacaaagcaaaccagactacaaaaacgaaaca |
107 |
Q |
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| T |
14811296 |
ccaacaaaatctttaaaaacggaatcacagtgagatcagagactaaataaa-tgtaaataaacagtaagacaaagcaaaccagactacaaaaacgaaaca |
14811394 |
T |
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| Q |
108 |
gataccaaccaatcgagcgggatcaaaacgtggccttttgatctcatcagagcgaagcaaagtcaacccatacttatgaatgagaaagctatcatccatt |
207 |
Q |
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| T |
14811395 |
gataccaaccaaccgagcgggatcaaaacgtggccttttgatctcatcagagcgaagcgaagtcaacccatacttatgaatgagaaagctatcatccatt |
14811494 |
T |
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| Q |
208 |
acaacccttgtacccaacctaagcataatcctctttttgttaccagtggcaaaggagccattaacactatcaacaacattgaaagtggtaataacataca |
307 |
Q |
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| T |
14811495 |
acaacccttgtacccaacctaagcataatgctctttctgttaccagtggcaaaggagccattaacactatcaacaacattgaaagtggtgataacataca |
14811594 |
T |
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| Q |
308 |
ctaaatgcccgaagaacaaaggtcctaagcggccaacacactaggatgggattgttgcctgaatcttgttgccctacgaac |
388 |
Q |
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| T |
14811595 |
ctaaatgcccgaagaacaaaggtcctaagcggccaacacactaggatgggattgttgcctgaatcttgttgccctacgaac |
14811675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 460 - 579
Target Start/End: Original strand, 14811748 - 14811867
Alignment:
| Q |
460 |
taatttgtcatggcgtatccactcacatctatgtcgagcaaaattagcacaatgctaccaacacaaacaaggaaaaagctggtctcaacggaccacctcc |
559 |
Q |
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| T |
14811748 |
taatttttcatggcgtatcagctcacatctatgtcgagcaaaattagctcaatgctaccaacacgaccatggaaaaagctgctctcaacggaccacctac |
14811847 |
T |
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| Q |
560 |
gaaccaccctaaccttgatc |
579 |
Q |
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| T |
14811848 |
aaaccaccctaaccttgatc |
14811867 |
T |
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