View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1129_high_16 (Length: 452)

Name: NF1129_high_16
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1129_high_16
NF1129_high_16
[»] chr3 (20 HSPs)
chr3 (32-438)||(50241389-50241776)
chr3 (304-438)||(52753771-52753905)
chr3 (42-168)||(2250895-2251020)
chr3 (42-168)||(14045308-14045434)
chr3 (42-168)||(20790232-20790357)
chr3 (291-391)||(40057881-40057981)
chr3 (42-168)||(39184079-39184205)
chr3 (42-168)||(40057690-40057816)
chr3 (291-391)||(2251085-2251184)
chr3 (291-391)||(39184270-39184370)
chr3 (291-391)||(20790422-20790521)
chr3 (125-162)||(20935037-20935074)
chr3 (125-162)||(32976511-32976548)
chr3 (125-162)||(42400423-42400460)
chr3 (356-391)||(14233007-14233042)
chr3 (125-156)||(50332005-50332036)
chr3 (274-391)||(34850447-34850564)
chr3 (193-225)||(14249271-14249303)
chr3 (125-157)||(17764130-17764162)
chr3 (125-157)||(19065450-19065482)
[»] chr4 (6 HSPs)
chr4 (33-438)||(6554451-6554837)
chr4 (33-438)||(314233-314620)
chr4 (42-157)||(35695942-35696059)
chr4 (125-156)||(13228701-13228732)
chr4 (190-234)||(24180967-24181011)
chr4 (257-305)||(35696136-35696184)
[»] chr5 (7 HSPs)
chr5 (33-438)||(9024862-9025248)
chr5 (42-168)||(30327039-30327164)
chr5 (41-168)||(23570626-23570752)
chr5 (293-359)||(30326906-30326972)
chr5 (291-389)||(23570464-23570561)
chr5 (125-156)||(38015979-38016010)
chr5 (42-123)||(27593551-27593632)
[»] scaffold0211 (1 HSPs)
scaffold0211 (33-438)||(18243-18629)
[»] scaffold0114 (1 HSPs)
scaffold0114 (37-438)||(36954-37336)
[»] chr2 (7 HSPs)
chr2 (33-438)||(31965633-31966017)
chr2 (125-162)||(19040706-19040743)
chr2 (125-162)||(39839128-39839165)
chr2 (125-157)||(36720075-36720107)
chr2 (126-177)||(14905103-14905154)
chr2 (42-123)||(24968967-24969048)
chr2 (190-235)||(45054785-45054830)
[»] chr8 (15 HSPs)
chr8 (34-438)||(41526821-41527205)
chr8 (42-168)||(360967-361092)
chr8 (42-162)||(40886775-40886896)
chr8 (291-391)||(45245423-45245523)
chr8 (291-391)||(40886967-40887063)
chr8 (291-391)||(361157-361256)
chr8 (42-168)||(45245232-45245358)
chr8 (125-160)||(38290543-38290578)
chr8 (263-360)||(15342168-15342263)
chr8 (263-360)||(15431233-15431328)
chr8 (263-360)||(15522537-15522632)
chr8 (130-180)||(17871244-17871294)
chr8 (126-156)||(42797332-42797362)
chr8 (128-156)||(13756548-13756576)
chr8 (128-175)||(14373895-14373940)
[»] scaffold0284 (1 HSPs)
scaffold0284 (42-437)||(620-996)
[»] chr1 (13 HSPs)
chr1 (34-438)||(49881712-49882099)
chr1 (42-168)||(19102761-19102886)
chr1 (33-97)||(45918340-45918404)
chr1 (42-168)||(21467720-21467845)
chr1 (291-391)||(19102597-19102696)
chr1 (125-162)||(1992431-1992468)
chr1 (125-162)||(20306773-20306810)
chr1 (125-162)||(40946528-40946565)
chr1 (125-162)||(30001782-30001819)
chr1 (125-157)||(43387145-43387177)
chr1 (328-391)||(21467566-21467628)
chr1 (125-154)||(3982731-3982760)
chr1 (126-154)||(47783156-47783184)
[»] chr6 (11 HSPs)
chr6 (42-168)||(21986190-21986315)
chr6 (42-168)||(33348201-33348326)
chr6 (291-391)||(33348037-33348136)
chr6 (125-162)||(7428525-7428562)
chr6 (291-359)||(21986380-21986448)
chr6 (126-162)||(16279120-16279156)
chr6 (126-162)||(28365735-28365771)
chr6 (125-156)||(1599691-1599722)
chr6 (274-391)||(4790646-4790763)
chr6 (107-152)||(9449661-9449706)
chr6 (115-180)||(16705606-16705671)
[»] scaffold0051 (1 HSPs)
scaffold0051 (251-366)||(12677-12792)
[»] scaffold1345 (1 HSPs)
scaffold1345 (125-162)||(1857-1894)
[»] chr7 (2 HSPs)
chr7 (125-162)||(43989691-43989728)
chr7 (195-235)||(6198481-6198521)
[»] scaffold1750 (1 HSPs)
scaffold1750 (125-162)||(324-361)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 32 - 438
Target Start/End: Original strand, 50241389 - 50241776
Alignment:
Q  32 ttaaccaacctttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgt 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||  | ||||    
T  50241389 ttaaccaacctttttaaacatatggtgtcttcatttgatattatttgactatgtcacgtaattatggacacagagagttgcaaacttgaataaaaaatgt 50241488  T
Q  132 taatgtgtcaagtgtgagttaaaattttatagtggatataagagtaaattatggatataagagtagattatgaataacatataagtgagatgactcattt 231  Q
    |||||||||||||||||||||||||| |||||||||                   |||||||||| |||||||||||||||||||||||||||||||| |    
T  50241489 taatgtgtcaagtgtgagttaaaattctatagtgga-------------------tataagagtaaattatgaataacatataagtgagatgactcatat 50241569  T
Q  232 acatactactggcttaaagttttgtgtgaatatgtgatatttatctcacttgtatggtatctcttagtctaatatggtgataatactcagtgtaagatcc 331  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  50241570 acatactactggcttaaagttttgtgtgaatatgtgatatcaatctcacttgtatggtatctcttagtctaatatggtgataaaactcactgtaagatcc 50241669  T
Q  332 cttggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttatttaaaaaatttatcctaaattttgattattgaacgtcattcgct 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  50241670 cttggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttatttaaaaaatttatcctaaattttgattattgaacgccatttgct 50241769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 304 - 438
Target Start/End: Original strand, 52753771 - 52753905
Alignment:
Q  304 tatggtgataatactcagtgtaagatcccttggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttatttaaaaaatttatcct 403  Q
    ||||||||||| ||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  52753771 tatggtgataaaactcagtataagatccattggacgtcccaaagttatgatgaattgttttgttagcttttatatctcatttatttaaattttttatcct 52753870  T
Q  404 aaattttgattattgaacgtcattcgcttccatgc 438  Q
    ||||||| |||||||||   |||||||||||||||    
T  52753871 aaattttaattattgaataccattcgcttccatgc 52753905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 42 - 168
Target Start/End: Original strand, 2250895 - 2251020
Alignment:
Q  42 tttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgttaatgtgtca 141  Q
    ||||||||||||| || | ||| |||||| ||||| |||||| ||||||||||||| |||| |||||||||||| ||||||| |||||||||||||||||    
T  2250895 tttttaaacatattgtattttcctttgatcttatttgactatatcacgtaattatgaacag-gagagttgcaaatttgaataagagatgttaatgtgtca 2250993  T
Q  142 agtgtgagttaaaattttatagtggat 168  Q
    ||| |||||||||| |||||| |||||    
T  2250994 agtatgagttaaaaatttatattggat 2251020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 42 - 168
Target Start/End: Original strand, 14045308 - 14045434
Alignment:
Q  42 tttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgttaatgtgtca 141  Q
    ||||||||||||| || ||||| ||||||  |||| |||||| ||||||||||||| ||| ||||| ||||||| ||||||| ||| ||||||||||||     
T  14045308 tttttaaacatattgtatcttcctttgatcatatttgactatatcacgtaattatggacacagagacttgcaaatttgaataagaggtgttaatgtgtcg 14045407  T
Q  142 agtgtgagttaaaattttatagtggat 168  Q
    ||||||||||||||||||||| |||||    
T  14045408 agtgtgagttaaaattttatattggat 14045434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 42 - 168
Target Start/End: Original strand, 20790232 - 20790357
Alignment:
Q  42 tttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgttaatgtgtca 141  Q
    ||||||||||||| || ||||| ||| || ||||| |||||| ||||||||||||| |||| |||||||||||| ||||||| ||| |||||||||||||    
T  20790232 tttttaaacatattgtatcttcctttaatcttatttgactatatcacgtaattatgaacag-gagagttgcaaatttgaataagaggtgttaatgtgtca 20790330  T
Q  142 agtgtgagttaaaattttatagtggat 168  Q
    ||| |||||||||| |||||| |||||    
T  20790331 agtatgagttaaaaatttatattggat 20790357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 391
Target Start/End: Original strand, 40057881 - 40057981
Alignment:
Q  291 tctcttagtctaatatggtgataatactcagtgtaagatcccttggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttattta 390  Q
    |||||||||||||| ||| |||||  ||||  ||| |||||||| ||||||||||| ||| ||||||||||||||||| |||||| ||||||||||||||    
T  40057881 tctcttagtctaatgtggcgataaagctcaaggtaggatcccttagaagtcccaaaattaagatgaattgttttgttatcttttagatctcatttattta 40057980  T
Q  391 a 391  Q
    |    
T  40057981 a 40057981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 42 - 168
Target Start/End: Original strand, 39184079 - 39184205
Alignment:
Q  42 tttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgttaatgtgtca 141  Q
    ||||||||||||| |  ||||| |||||| ||||| |||||| |||| |||||||| ||| ||||||||||||| ||||||| ||| | | |||||||||    
T  39184079 tttttaaacatattgcatcttcctttgatcttatttgactatatcacataattatggacacagagagttgcaaatttgaataagaggtataaatgtgtca 39184178  T
Q  142 agtgtgagttaaaattttatagtggat 168  Q
    |||||| ||| ||| |||||| |||||    
T  39184179 agtgtgggtttaaagtttatattggat 39184205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 42 - 168
Target Start/End: Original strand, 40057690 - 40057816
Alignment:
Q  42 tttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgttaatgtgtca 141  Q
    ||||||||||||| |  ||||| |||||| ||||| |||||| |||| |||||| | ||| ||||||||||||| ||||||||||| | | |||| ||||    
T  40057690 tttttaaacatattgcatcttcctttgatcttatttgactatatcacataattagggacacagagagttgcaaatttgaataggaggtataaatgagtca 40057789  T
Q  142 agtgtgagttaaaattttatagtggat 168  Q
    | |||||||||||| |||||| |||||    
T  40057790 aatgtgagttaaaaatttatattggat 40057816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 391
Target Start/End: Original strand, 2251085 - 2251184
Alignment:
Q  291 tctcttagtctaatatggtgataatactcagtgtaagatcccttggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttattta 390  Q
    |||||| ||||||| ||||||||| |||||   || |||||||||||||||||||||||||||||||||  ||||||||||| |   |||||||||||||    
T  2251085 tctcttggtctaatgtggtgataaaactcaagataggatcccttggaagtcccaaagttatgatgaatt-atttgttagcttgtgggtctcatttattta 2251183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 391
Target Start/End: Original strand, 39184270 - 39184370
Alignment:
Q  291 tctcttagtctaatatggtgataatactcagtgtaagatcccttggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttattta 390  Q
    |||||||||||||| ||| |||||  ||||  ||| |||||||| |||||| | || ||| |||||||||||||||||||||||  ||||||||||||||    
T  39184270 tctcttagtctaatgtggcgataaagctcaaggtaggatcccttagaagtctcgaaattaagatgaattgttttgttagcttttcgatctcatttattta 39184369  T
Q  391 a 391  Q
    |    
T  39184370 a 39184370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 391
Target Start/End: Original strand, 20790422 - 20790521
Alignment:
Q  291 tctcttagtctaatatggtgataatactcagtgtaagatcccttggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttattta 390  Q
    |||||| ||||||| ||| ||||| |||||   || |||||||||||||||||||||||||||||||||  ||||||||||| |   |||||||||||||    
T  20790422 tctcttggtctaatgtggcgataaaactcaagataggatcccttggaagtcccaaagttatgatgaatt-atttgttagcttgtgggtctcatttattta 20790520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 20935074 - 20935037
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaattttata 162  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  20935074 gagatgttaatgtgtcaggtgtgagttaaaattttata 20935037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 32976548 - 32976511
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaattttata 162  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  32976548 gagatgttaatgtatcaagtgtgagttaaaattttata 32976511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 42400460 - 42400423
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaattttata 162  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  42400460 gagatgttaatgtgtcacgtgtgagttaaaattttata 42400423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 391
Target Start/End: Original strand, 14233007 - 14233042
Alignment:
Q  356 aattgttttgttagcttttatatctcatttatttaa 391  Q
    |||||||||||||||||||| |||||||||||||||    
T  14233007 aattgttttgttagcttttagatctcatttatttaa 14233042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 156
Target Start/End: Complemental strand, 50332036 - 50332005
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaat 156  Q
    ||||||||||||||||||||||||||||||||    
T  50332036 gagatgttaatgtgtcaagtgtgagttaaaat 50332005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 391
Target Start/End: Complemental strand, 34850564 - 34850447
Alignment:
Q  274 atctcacttgtatggtatctcttagtctaatatggtgataatactcagtgtaagatcccttggaagtcccaaagttatgatgaattgttttgttagcttt 373  Q
    |||||||||||  ||| ||||||| ||||| |||||||| | ||||  || |  ||||| | ||| || |||| | |||||||| ||||||||||| |||    
T  34850564 atctcacttgtgaggtttctcttaatctaagatggtgatcaaactctatgcagaatcccctagaaatctcaaaatcatgatgaactgttttgttagtttt 34850465  T
Q  374 tatatctcatttatttaa 391  Q
    ||||| | ||||||||||    
T  34850464 tatatgtaatttatttaa 34850447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 14249303 - 14249271
Alignment:
Q  193 agtagattatgaataacatataagtgagatgac 225  Q
    ||||||||||||| |||||||||||||||||||    
T  14249303 agtagattatgaaaaacatataagtgagatgac 14249271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 17764130 - 17764162
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaatt 157  Q
    |||||||||||||| ||||||||||||||||||    
T  17764130 gagatgttaatgtgacaagtgtgagttaaaatt 17764162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 19065450 - 19065482
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaatt 157  Q
    |||||||||||||| ||||||||||||||||||    
T  19065450 gagatgttaatgtgacaagtgtgagttaaaatt 19065482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 33 - 438
Target Start/End: Original strand, 6554451 - 6554837
Alignment:
Q  33 taaccaacctttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgtt 132  Q
    |||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||    
T  6554451 taactaacctttttaaatatatggtgtcttcatttgatattatttgactatgtcacgtaattatggacacagagagttgcaaacttgaataagagatgtt 6554550  T
Q  133 aatgtgtcaagtgtgagttaaaattttatagtggatataagagtaaattatggatataagagtagattatgaataacatataagtgagatgactcattta 232  Q
    ||||||||||||||||||||||||| ||||||||||               |||    |||||||||| |||||||||||||||||||||||||||| ||    
T  6554551 aatgtgtcaagtgtgagttaaaattctatagtggat---------------gga----agagtagattttgaataacatataagtgagatgactcatata 6554631  T
Q  233 catactactggcttaaagttttgtgtgaatatgtgatatttatctcacttgtatggtatctcttagtctaatatggtgataatactcagtgtaagatccc 332  Q
    |||||||||||||||| ||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6554632 catactactggcttaaggttttgtgtgaatatgtgatatcaatctcaattgtatggtatctcttagtctaatatggtgataaaactcagtgtaagatccc 6554731  T
Q  333 ttggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttatttaaaaaatttatcctaaattttgattattgaacgtcattcgctt 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6554732 ttggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttatttaaaaaatttatcctaaattttgattattgaacgtcattcgctt 6554831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 33 - 438
Target Start/End: Original strand, 314233 - 314620
Alignment:
Q  33 taaccaacctttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgtt 132  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||    
T  314233 taaccaacctttttaaacatatggtgtcttcatttgatattatttgactatgtcacgtaattatggacacagagagttgcaaacttgaataagagatgtt 314332  T
Q  133 aatgtgtcaagtgtgagttaaaattttatagtggatataagagtaaattatggatataagagtagattatgaataacatataagtgagatgactcattta 232  Q
    ||||||||||| ||||||||||||| ||| ||||||| ||||                   ||||||| |||||||||||||||||||||||||||| ||    
T  314333 aatgtgtcaagcgtgagttaaaattctatggtggatagaaga-------------------gtagattttgaataacatataagtgagatgactcatata 314413  T
Q  233 catactactggcttaaagttttgtgtgaatatgtgatatttatctcacttgtatggtatctcttagtctaatatggtgataatactcagtgtaagatccc 332  Q
    ||||| |||||||||| ||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||     
T  314414 cataccactggcttaatgttttgtgtgaatatgtgatatcaatctcacttgtatgatatctcttagtctaatatggtgataaaactcagtgtaagatcca 314513  T
Q  333 ttggaagtcccaaagttatgatgaattgttttgttagcttttatatctca-tttatttaaaaaatttatcctaaattttgattattgaacgtcattcgct 431  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  314514 ttggaagtcccaaagttatgaagaattgttttattagcttttatatctcattttatttaaaaaatttatcctaaattttgattattgaacgtcattcgct 314613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 35695942 - 35696059
Alignment:
Q  42 tttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgttaa--tgtgt 139  Q
    |||||||||||||   || ||||||| || ||||| ||  |||||||||||||||| |||  ||||||||||||||| ||||  |||||||||  |||||    
T  35695942 tttttaaacatattacgttttcattttatcttatttgaacatgtcacgtaattatggacacggagagttgcaaacttaaataatagatgttaatgtgtgt 35696041  T
Q  140 caagtgtgagttaaaatt 157  Q
    ||||||||||||||||||    
T  35696042 caagtgtgagttaaaatt 35696059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 156
Target Start/End: Original strand, 13228701 - 13228732
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaat 156  Q
    ||||||||||||||||||||||||||||||||    
T  13228701 gagatgttaatgtgtcaagtgtgagttaaaat 13228732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 24181011 - 24180967
Alignment:
Q  190 aagagtagattatgaataacatataagtgagatgactcatttaca 234  Q
    |||||||||| ||||||||||||||||||| || |||||| ||||    
T  24181011 aagagtagatgatgaataacatataagtgaaataactcatataca 24180967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 35696136 - 35696184
Alignment:
Q  257 gtgaatatgtgatatttatctcacttgtatggtatctcttagtctaata 305  Q
    |||||||||||||||  ||||||||||| || |||||||| ||||||||    
T  35696136 gtgaatatgtgatatcaatctcacttgtgtgatatctcttggtctaata 35696184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 33 - 438
Target Start/End: Original strand, 9024862 - 9025248
Alignment:
Q  33 taaccaacctttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgtt 132  Q
    |||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| | | | ||||||||||| ||||||| ||||||||    
T  9024862 taaccaacttttttaaacatatggtgtcttcgtttgatattatttgactatgtcacgtaattatggataaaaagagttgcaaaattgaataagagatgtt 9024961  T
Q  133 aatgtgtcaagtgtgagttaaaattttatagtggatataagagtaaattatggatataagagtagattatgaataacatataagtgagatgactcattta 232  Q
    ||||||||||||||||||||||||| ||||||||||| ||||                   ||||||| |||||||||||||||||||||||||||| ||    
T  9024962 aatgtgtcaagtgtgagttaaaattatatagtggatagaaga-------------------gtagattttgaataacatataagtgagatgactcatata 9025042  T
Q  233 catactactggcttaaagttttgtgtgaatatgtgatatttatctcacttgtatggtatctcttagtctaatatggtgataatactcagtgtaagatccc 332  Q
    |||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9025043 catactactggcttaaggttttgtgtgaatatgtgatatcaatctcacttgtatggtatctcttagtctaatatggtgataaaactcagtgtaagatccc 9025142  T
Q  333 ttggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttatttaaaaaatttatcctaaattttgattattgaacgtcattcgctt 432  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9025143 ttggaagtcccaaagttatgatggattgttttgttagcttttatatctcatttatttaaaaaaattatcctaaattttgattattgaacgtcattcgctt 9025242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 30327164 - 30327039
Alignment:
Q  42 tttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgttaatgtgtca 141  Q
    ||||||||||||| || ||||| |||||| ||||| |||||| ||||||||||||| |||| |||||||||||| ||||||| ||| |||||||||||||    
T  30327164 tttttaaacatattgtatcttcctttgatcttatttgactatatcacgtaattatgaacag-gagagttgcaaatttgaataagaggtgttaatgtgtca 30327066  T
Q  142 agtgtgagttaaaattttatagtggat 168  Q
    ||| |||||||||| |||||| |||||    
T  30327065 agtatgagttaaaaatttatattggat 30327039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 41 - 168
Target Start/End: Complemental strand, 23570752 - 23570626
Alignment:
Q  41 ctttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgttaatgtgtc 140  Q
    |||||| ||||||| || ||||| |||||| ||||| |||||| ||||||||||||| ||| | ||||||||||| ||||||| ||| ||||||||||||    
T  23570752 cttttttaacatattgtatcttcctttgatcttatttgactatatcacgtaattatgaacata-agagttgcaaatttgaataagaggtgttaatgtgtc 23570654  T
Q  141 aagtgtgagttaaaattttatagtggat 168  Q
    |||| |||||||||| |||||| |||||    
T  23570653 aagtatgagttaaaaatttatattggat 23570626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 30326972 - 30326906
Alignment:
Q  293 tcttagtctaatatggtgataatactcagtgtaagatcccttggaagtcccaaagttatgatgaatt 359  Q
    |||| ||||||| ||||||||| |||||   || |||||||||||||||||||||||||||||||||    
T  30326972 tcttggtctaatgtggtgataaaactcaagataggatcccttggaagtcccaaagttatgatgaatt 30326906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 389
Target Start/End: Complemental strand, 23570561 - 23570464
Alignment:
Q  291 tctcttagtctaatatggtgataatactcagtgtaagatcccttggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttattt 389  Q
    |||||| ||||| | ||||||||| |||||   || ||||||||||||||||||||||||||||| |||  ||||||||||| |   ||||||||||||    
T  23570561 tctcttggtctattgtggtgataaaactcaagataggatcccttggaagtcccaaagttatgatgtatt-atttgttagcttgtgggtctcatttattt 23570464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 156
Target Start/End: Complemental strand, 38016010 - 38015979
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaat 156  Q
    ||||||||||||||||||||||||||||||||    
T  38016010 gagatgttaatgtgtcaagtgtgagttaaaat 38015979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 27593632 - 27593551
Alignment:
Q  42 tttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaata 123  Q
    ||||||||||||| |  ||||| |||||| ||||| |||||| |||| || ||||| ||| | ||||||||||| |||||||    
T  27593632 tttttaaacatattgcatcttcctttgatcttatttgactatatcacatagttatggacacatagagttgcaaatttgaata 27593551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 33 - 438
Target Start/End: Complemental strand, 18629 - 18243
Alignment:
Q  33 taaccaacctttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgtt 132  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||    
T  18629 taaccaacctttttaaacatatggtgtcttcatttgatattatttgactatgtcacgtaattatggacacagagagttgcaaacttgaataagagatgtt 18530  T
Q  133 aatgtgtcaagtgtgagttaaaattttatagtggatataagagtaaattatggatataagagtagattatgaataacatataagtgagatgactcattta 232  Q
    |||  |||||||||||||||||||| ||||||||||| ||||                   ||||||| |||||||||||||||||||||||||||| ||    
T  18529 aattagtcaagtgtgagttaaaattctatagtggatagaaga-------------------gtagattttgaataacatataagtgagatgactcatata 18449  T
Q  233 catactactggcttaaagttttgtgtgaatatgtgatatttatctcacttgtatggtatctcttagtctaatatggtgataatactcagtgtaagatccc 332  Q
    |||||||| ||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  18448 catactacaggcttaaggttttgtgtgaatatgtgatatcaatctcacttgtatggtatctcttagtctaatatggtgataaaattcagtgtaagatccc 18349  T
Q  333 ttggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttatttaaaaaatttatcctaaattttgattattgaacgtcattcgctt 432  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||    
T  18348 ttggaagtcccaaagttatgatgaattgttttgttaacttttatatctcatttatttaaaaaaattatcccaaattttgattattgaacgtcattagctt 18249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 37 - 438
Target Start/End: Original strand, 36954 - 37336
Alignment:
Q  37 caacctttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgttaatg 136  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||||||||||||||||||| ||||||||||||    
T  36954 caacctttttaaacatatggtgtcttcatttgatattatttgactacgtcacgtaattatggacacagagagttgcaaacttgaataagagatgttaatg 37053  T
Q  137 tgtcaagtgtgagttaaaattttatagtggatataagagtaaattatggatataagagtagattatgaataacatataagtgagatgactcatttacata 236  Q
    ||||||||||||||||||||| ||||||||||| ||||                   ||||||| ||||||||||||||||||||||| |||| ||||||    
T  37054 tgtcaagtgtgagttaaaattctatagtggatagaaga-------------------gtagattttgaataacatataagtgagatgattcatatacata 37134  T
Q  237 ctactggcttaaagttttgtgtgaatatgtgatatttatctcacttgtatggtatctcttagtctaatatggtgataatactcagtgtaagatcccttgg 336  Q
    ||||| |||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37135 ctactagcttaaggttttgtgtgaatatgtgatatcaatctcacttgtatggtatctcttagtctaatatggtgataaaactcagtgtaagatcccttgg 37234  T
Q  337 aagtcccaaagttatgatgaattgttttgttagcttttatatctcatttatttaaaaaatttatcctaaattttgattattgaacgtcattcgcttccat 436  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||    
T  37235 aagtcccaaaggtatgattaattgttttgttagcttttatatctcatttatttaaaaaaattatcctaaattttgattattgaaagccattcgcttcgat 37334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 33 - 438
Target Start/End: Complemental strand, 31966017 - 31965633
Alignment:
Q  33 taaccaacctttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgtt 132  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||| |||| |||    
T  31966017 taaccaacctttttaaacatatggtgtcttcatttgatattatttgactatgtcacgtaattatggacacagagagttgcaaacttgaataagagaagtt 31965918  T
Q  133 aatgtgtcaagtgtgagttaaaattttatagtggatataagagtaaattatggatataagagtagattatgaataacatataagtgagatgactcattta 232  Q
    |||||||||||| |||||||||||| |||||| |||| ||||||                   ||||| ||||||||||||||||||||||||  || ||    
T  31965917 aatgtgtcaagtatgagttaaaattctatagtagatagaagagt-------------------agattttgaataacatataagtgagatgac--atata 31965839  T
Q  233 catactactggcttaaagttttgtgtgaatatgtgatatttatctcacttgtatggtatctcttagtctaatatggtgataatactcagtgtaagatccc 332  Q
    ||||||| || ||||| ||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  31965838 catactattgacttaaggttttgtgtgaatatgtgatatcaatctcacttgtatgatatctcttagtctaatatggtgataaaactcagtgtaagatccc 31965739  T
Q  333 ttggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttatttaaaaaatttatcctaaattttgattattgaacgtcattcgctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  31965738 ttggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttatttaaaaaatttatcctaaattttaattattgaacgccattcgctt 31965639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 19040706 - 19040743
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaattttata 162  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19040706 gagatgttaatgtgtcaagtgtgagttaaaattttata 19040743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 39839165 - 39839128
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaattttata 162  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39839165 gagatgttaatgtgtcaagtgtgagttaaaattttata 39839128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 36720075 - 36720107
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaatt 157  Q
    |||||||||||||||||||||||||||||||||    
T  36720075 gagatgttaatgtgtcaagtgtgagttaaaatt 36720107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 14905103 - 14905154
Alignment:
Q  126 agatgttaatgtgtcaagtgtgagttaaaattttatagtggatataagagta 177  Q
    ||||||| ||||||||||||||||||||| ||||||| |||||  |||||||    
T  14905103 agatgttgatgtgtcaagtgtgagttaaagttttatattggatgaaagagta 14905154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 24968967 - 24969048
Alignment:
Q  42 tttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaata 123  Q
    ||||||||||||| |  ||||| |||||| ||||| |||||| | || |||||||| ||| | ||||||||||| |||||||    
T  24968967 tttttaaacatattgcatcttcctttgatcttatttgactatattacataattatggacacatagagttgcaaatttgaata 24969048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 45054830 - 45054785
Alignment:
Q  190 aagagtagattatgaataacatataagtgagatgactcatttacat 235  Q
    |||||||||| |||||||||||| |||||| ||||||||| |||||    
T  45054830 aagagtagatcatgaataacatacaagtgaaatgactcatatacat 45054785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 34 - 438
Target Start/End: Complemental strand, 41527205 - 41526821
Alignment:
Q  34 aaccaacctttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgtta 133  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||    
T  41527205 aaccaacctttttaaatatatggtgtcttcatttgatattatctgactatgtcacgtaattatgaacacagagagttgcaaacttgaataagagatatta 41527106  T
Q  134 atgtgtcaagtgtgagttaaaattttatagtggatataagagtaaattatggatataagagtagattatgaataacatataagtgagatgactcatttac 233  Q
    |||||||||||||||||||||||| ||||||||||| ||||                   ||||||| |||||||||||||||||||||||||||| |||    
T  41527105 atgtgtcaagtgtgagttaaaattctatagtggatagaaga-------------------gtagattttgaataacatataagtgagatgactcatatac 41527025  T
Q  234 atactactggcttaaagttttgtgtgaatatgtgatatttatctcacttgtatggtatctcttagtctaatatggtgataatactcagtgtaagatccct 333  Q
    ||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||  ||||||||||||||||||| ||  ||||||||||||||    
T  41527024 atactactggcttaaggttttgtgtgaatatgtgatatcaatctcacttgtatggtatct--tagtctaatatggtgataaaacctagtgtaagatccct 41526927  T
Q  334 tggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttatttaa-aaaatttatcctaaattttgattattgaacgtcattcgctt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||| |||||||||||    
T  41526926 tggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttatttaaaaaaaaatatcctaaattttgattattgaatgtcattcgctt 41526827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 42 - 168
Target Start/End: Original strand, 360967 - 361092
Alignment:
Q  42 tttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgttaatgtgtca 141  Q
    ||||||||||||| || ||||| |||||| ||||| |||||| ||||||||||||| |||| |||||||||||| ||||||| ||| |||||||||||||    
T  360967 tttttaaacatattgtatcttcttttgatcttatttgactatatcacgtaattatgaacag-gagagttgcaaatttgaataagaggtgttaatgtgtca 361065  T
Q  142 agtgtgagttaaaattttatagtggat 168  Q
    ||| |||||||||| |||||| |||||    
T  361066 agtatgagttaaaaatttatattggat 361092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 40886775 - 40886896
Alignment:
Q  42 tttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgttaatgtgtc- 140  Q
    ||||||||||||| |  ||||| |||||| ||||| |||||| |||| ||||| || ||| ||||||||||||| ||||||| ||| | | ||||||||     
T  40886775 tttttaaacatattgcatcttcctttgatcttatttgactatatcacataattgtggacacagagagttgcaaatttgaataagaggtataaatgtgtct 40886874  T
Q  141 aagtgtgagttaaaattttata 162  Q
    ||||||||||||||| ||||||    
T  40886875 aagtgtgagttaaaaatttata 40886896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 391
Target Start/End: Original strand, 45245423 - 45245523
Alignment:
Q  291 tctcttagtctaatatggtgataatactcagtgtaagatcccttggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttattta 390  Q
    |||||||||||||| ||| |||||  ||||  ||| |||||| | |||||||| || ||  |||||||||||||||||||||||| ||||||||||||||    
T  45245423 tctcttagtctaatgtggcgataaagctcaaggtaggatcccctagaagtcccgaaatttagatgaattgttttgttagcttttagatctcatttattta 45245522  T
Q  391 a 391  Q
    |    
T  45245523 a 45245523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 291 - 391
Target Start/End: Original strand, 40886967 - 40887063
Alignment:
Q  291 tctcttagtctaatatggtgataatactcagtgtaagatcccttggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttattta 390  Q
    |||||||||||||| ||||||||| |||||  ||| |||||    |||||||  || ||| |||||||||||||||||||||||| ||||||||||||||    
T  40886967 tctcttagtctaatgtggtgataaaactcaaggtaggatcc----gaagtcctgaaattaagatgaattgttttgttagcttttagatctcatttattta 40887062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 391
Target Start/End: Original strand, 361157 - 361256
Alignment:
Q  291 tctcttagtctaatatggtgataatactcagtgtaagatcccttggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttattta 390  Q
    |||||| ||||||| ||||||||| |||||   || ||||||||| |||||||||||||||||||||||  ||||||||||| |   |||||||||||||    
T  361157 tctcttggtctaatgtggtgataaaactcaagataggatcccttgaaagtcccaaagttatgatgaatt-atttgttagcttgtgggtctcatttattta 361255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 168
Target Start/End: Original strand, 45245232 - 45245358
Alignment:
Q  42 tttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgttaatgtgtca 141  Q
    |||||||||||||    ||||| |||||| |||||  ||||| |||| |||||||| | | | |||||||||||  |||||| |||   | |||||||||    
T  45245232 tttttaaacatattacatcttcctttgatcttatttaactatatcacataattatggatacaaagagttgcaaatctgaataagaggaataaatgtgtca 45245331  T
Q  142 agtgtgagttaaaattttatagtggat 168  Q
    |||||||||||||| |||||| |||||    
T  45245332 agtgtgagttaaaaatttatattggat 45245358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 160
Target Start/End: Original strand, 38290543 - 38290578
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaatttta 160  Q
    |||||||||||||||||||||||||||| |||||||    
T  38290543 gagatgttaatgtgtcaagtgtgagttataatttta 38290578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 360
Target Start/End: Complemental strand, 15342263 - 15342168
Alignment:
Q  263 atgtgatatttatctcacttgtatggtatctcttagtctaatatggtgataatactcagtgtaagatcccttggaagtcccaaagttatgatgaattg 360  Q
    |||||||||  ||||||||||| |||| |||||||  ||||| ||||||| | ||| |||  | ||||| | |||||||||||| |||||||||||||    
T  15342263 atgtgatatcaatctcacttgtgtggtttctcttaacctaatgtggtgatcaaactaagt--acgatccttaggaagtcccaaaattatgatgaattg 15342168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 360
Target Start/End: Complemental strand, 15431328 - 15431233
Alignment:
Q  263 atgtgatatttatctcacttgtatggtatctcttagtctaatatggtgataatactcagtgtaagatcccttggaagtcccaaagttatgatgaattg 360  Q
    |||||||||  ||||||||||| |||| |||||||  ||||| ||||||| | ||| |||  | ||||| | |||||||||||| |||||||||||||    
T  15431328 atgtgatatcaatctcacttgtgtggtttctcttaacctaatgtggtgatcaaactaagt--acgatccttaggaagtcccaaaattatgatgaattg 15431233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 360
Target Start/End: Complemental strand, 15522632 - 15522537
Alignment:
Q  263 atgtgatatttatctcacttgtatggtatctcttagtctaatatggtgataatactcagtgtaagatcccttggaagtcccaaagttatgatgaattg 360  Q
    |||||||||  ||||||||||| |||| |||||||  ||||| ||||||| | ||| |||  | ||||| | |||||||||||| |||||||||||||    
T  15522632 atgtgatatcaatctcacttgtgtggtttctcttaacctaatgtggtgatcaaactaagt--acgatccttaggaagtcccaaaattatgatgaattg 15522537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 17871244 - 17871294
Alignment:
Q  130 gttaatgtgtcaagtgtgagttaaaattttatagtggatataagagtaaat 180  Q
    ||||||||||||||||||||||||| ||||| | || || |||||||||||    
T  17871244 gttaatgtgtcaagtgtgagttaaagttttacattgaatgtaagagtaaat 17871294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 156
Target Start/End: Complemental strand, 42797362 - 42797332
Alignment:
Q  126 agatgttaatgtgtcaagtgtgagttaaaat 156  Q
    |||||||||||||||||||||||||||||||    
T  42797362 agatgttaatgtgtcaagtgtgagttaaaat 42797332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 156
Target Start/End: Original strand, 13756548 - 13756576
Alignment:
Q  128 atgttaatgtgtcaagtgtgagttaaaat 156  Q
    |||||||||||||||||||||||||||||    
T  13756548 atgttaatgtgtcaagtgtgagttaaaat 13756576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 14373895 - 14373940
Alignment:
Q  128 atgttaatgtgtcaagtgtgagttaaaattttatagtggatataagag 175  Q
    ||||||||||||||||||  ||||||||||||| | ||||||||||||    
T  14373895 atgttaatgtgtcaagtg--agttaaaattttaaattggatataagag 14373940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 42 - 437
Target Start/End: Complemental strand, 996 - 620
Alignment:
Q  42 tttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgttaatgtgtca 141  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| ||| ||||||||||||| ||||||| |||||||||||||||||    
T  996 tttttaaacatatggtgtcttgatttgatattatttgactatgtcatgtaattatggacacagagagttgcaaatttgaataagagatgttaatgtgtca 897  T
Q  142 agtgtgagttaaaattttatagtggatataagagtaaattatggatataagagtagattatgaataacatataagtgagatgactcatttacatactact 241  Q
    ||||||||| ||| || ||||||||||| ||||                   ||||||| |||||||||||||||||||||||||||| |||||| ||||    
T  896 agtgtgagtaaaagttctatagtggatagaaga-------------------gtagattttgaataacatataagtgagatgactcatatacatattact 816  T
Q  242 ggcttaaagttttgtgtgaatatgtgatatttatctcacttgtatggtatctcttagtctaatatggtgataatactcagtgtaagatcccttggaagtc 341  Q
    |||||||  |||||||||||||||||||||  || |||||| |||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||     
T  815 ggcttaagattttgtgtgaatatgtgatatcaatatcacttttatgatatctcttagtctaatatggtgataaaactcaatgtaagatcccttggaagtt 716  T
Q  342 ccaaagttatgatgaattgttttgttagcttttatatctcatttatttaaaaaatttatcctaaattttgattattgaacgtcattcgcttccatg 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  715 ccaaagttatgatgaattgttttgttagcttttatatctcatttatttaaaaaatttatcctaaattttgattactgaacgccattcgcttccatg 620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 34 - 438
Target Start/End: Original strand, 49881712 - 49882099
Alignment:
Q  34 aaccaacctttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgtta 133  Q
    |||||||| |||||||| ||||||||||||||||||||||||| |||||||||| ||||| ||| ||| ||||||||||||||||||||| | |||||||    
T  49881712 aaccaaccgttttaaacgtatggtgtcttcatttgatattatttgactatgtcatgtaatcatggacacagagagttgcaaacttgaataagcgatgtta 49881811  T
Q  134 atgtgtcaagtgtgagttaaaattttatagtggatataagagtaaattatggatataagagtagattatgaataacatataagtgagatgactcatttac 233  Q
    |||||| |||||| |||||||||| ||||  |                 |||||| ||||| ||||| |||||||||||||||||||||||||||| |||    
T  49881812 atgtgttaagtgtaagttaaaattctatatag-----------------tggatagaagagaagattttgaataacatataagtgagatgactcatatac 49881894  T
Q  234 atactactggcttaaagttttgtgtgaatatgtgatatttatctcacttgtatggtatctcttagtctaatatggtgataatactcagtgtaagatccct 333  Q
    |||||| |||||||| ||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  49881895 atactattggcttaaggttttgtgtgaatatgtgatatcaatctcacttgtatggtatctcgtagtctaatatggtgataaaactcagtgtaagatccct 49881994  T
Q  334 tggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttatttaaaaaatttatcctaaattttgattattgaacgtcattcgcttc 433  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||| ||||||||||    
T  49881995 tggaagtcccaaagttataatgaattattttgttcgcttttatatctcatttatttaaattttttatcctaaattttgattattgaacgccattcgcttc 49882094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 19102886 - 19102761
Alignment:
Q  42 tttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgttaatgtgtca 141  Q
    ||||||||||||| || ||||| |||||| ||||| |||||| ||||||||||||| |||| |||||||||||| ||||||| ||| |||||||||||||    
T  19102886 tttttaaacatattgtatcttcctttgatcttatttgactatatcacgtaattatgaacag-gagagttgcaaatttgaataagaggtgttaatgtgtca 19102788  T
Q  142 agtgtgagttaaaattttatagtggat 168  Q
    ||| |||||||||| |||||| |||||    
T  19102787 agtatgagttaaaaatttatattggat 19102761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 45918404 - 45918340
Alignment:
Q  33 taaccaacctttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatg 97  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45918404 taactaacctttttaaacatatggtgtcttcatttgatattatttgactatgtcacgtaattatg 45918340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 21467845 - 21467720
Alignment:
Q  42 tttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgttaatgtgtca 141  Q
    ||||||||||||| || ||||| |||||| ||||| |||||| ||||||||||||| |||  ||||||| |||| ||||||| ||| ||||||| |||||    
T  21467845 tttttaaacatattgtatcttcctttgatcttatttgactatatcacgtaattatgaaca-tgagagttacaaatttgaataagaggtgttaatttgtca 21467747  T
Q  142 agtgtgagttaaaattttatagtggat 168  Q
    ||| |||||||||| |||||| |||||    
T  21467746 agtatgagttaaaaatttatattggat 21467720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 391
Target Start/End: Complemental strand, 19102696 - 19102597
Alignment:
Q  291 tctcttagtctaatatggtgataatactcagtgtaagatcccttggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttattta 390  Q
    |||||| ||||||| |||||||||  ||||   || |||||||||||||||||||||||||||||||||  ||||||||||| |   |||||||||||||    
T  19102696 tctcttggtctaatgtggtgataaagctcaagataggatcccttggaagtcccaaagttatgatgaatt-atttgttagcttgtgggtctcatttattta 19102598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 1992431 - 1992468
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaattttata 162  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1992431 gagatgttaatgtgtcaagtgtgagttaaaattttata 1992468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 20306810 - 20306773
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaattttata 162  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20306810 gagatgttaatgtgtcaagtgtgagttaaaattttata 20306773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 40946528 - 40946565
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaattttata 162  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40946528 gagatgttaatgtgtcaagtgtgagttaaaattttata 40946565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 30001819 - 30001782
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaattttata 162  Q
    |||||||||||||||||||||| |||||||||||||||    
T  30001819 gagatgttaatgtgtcaagtgtaagttaaaattttata 30001782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 43387177 - 43387145
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaatt 157  Q
    |||||||||||||||||||||||||||||||||    
T  43387177 gagatgttaatgtgtcaagtgtgagttaaaatt 43387145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 391
Target Start/End: Complemental strand, 21467628 - 21467566
Alignment:
Q  328 atcccttggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttatttaa 391  Q
    |||||||||||| |||||||||||||||||||  ||||||||||| |   ||||||||||||||    
T  21467628 atcccttggaaggcccaaagttatgatgaatt-atttgttagcttgtgggtctcatttatttaa 21467566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 154
Target Start/End: Original strand, 3982731 - 3982760
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaa 154  Q
    ||||||||||||||||||||||||||||||    
T  3982731 gagatgttaatgtgtcaagtgtgagttaaa 3982760  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 154
Target Start/End: Original strand, 47783156 - 47783184
Alignment:
Q  126 agatgttaatgtgtcaagtgtgagttaaa 154  Q
    |||||||||||||||||||||||||||||    
T  47783156 agatgttaatgtgtcaagtgtgagttaaa 47783184  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 42 - 168
Target Start/End: Original strand, 21986190 - 21986315
Alignment:
Q  42 tttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgttaatgtgtca 141  Q
    ||||||||||||  || ||||| |||||| ||||| |||||| ||| ||||||||| |||| |||||||||||| ||||||| ||| |||| ||||||||    
T  21986190 tttttaaacatactgtatcttcctttgatcttatttgactatatcatgtaattatgaacag-gagagttgcaaatttgaataagaggtgttgatgtgtca 21986288  T
Q  142 agtgtgagttaaaattttatagtggat 168  Q
    ||| |||||||||| |||||| |||||    
T  21986289 agtatgagttaaaaatttatattggat 21986315  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 33348326 - 33348201
Alignment:
Q  42 tttttaaacatatggtgtcttcatttgatattattcgactatgtcacgtaattatgtacagagagagttgcaaacttgaataggagatgttaatgtgtca 141  Q
    ||||||||||||| || ||||| || ||| ||||| |||||| ||||||||||||| |||  |||||||||||| ||||||| ||| | |||||||||||    
T  33348326 tttttaaacatattgtatcttccttcgatcttatttgactatatcacgtaattatgaacat-gagagttgcaaatttgaataagaggtattaatgtgtca 33348228  T
Q  142 agtgtgagttaaaattttatagtggat 168  Q
    ||| |||||||||  |||||| |||||    
T  33348227 agtatgagttaaatatttatattggat 33348201  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 391
Target Start/End: Complemental strand, 33348136 - 33348037
Alignment:
Q  291 tctcttagtctaatatggtgataatactcagtgtaagatcccttggaagtcccaaagttatgatgaattgttttgttagcttttatatctcatttattta 390  Q
    |||||| ||||||| ||||||||| |||||   || |||||||||||||||||||||||||||||||||  ||||||||||| |   |||||||||||||    
T  33348136 tctcttggtctaatgtggtgataaaactcaagataggatcccttggaagtcccaaagttatgatgaatt-atttgttagcttgtgggtctcatttattta 33348038  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 7428562 - 7428525
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaattttata 162  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7428562 gagatgttaatgtgtcaagtgtgagttaaaattttata 7428525  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 21986380 - 21986448
Alignment:
Q  291 tctcttagtctaatatggtgataatactcagtgtaagatcccttggaagtcccaaagttatgatgaatt 359  Q
    |||||| ||||||| ||||||||| |||||   || ||||||||| |||||||||||||||||||||||    
T  21986380 tctcttggtctaatgtggtgataaaactcaagataggatcccttgaaagtcccaaagttatgatgaatt 21986448  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 16279156 - 16279120
Alignment:
Q  126 agatgttaatgtgtcaagtgtgagttaaaattttata 162  Q
    ||||||||||||||||||||| |||||||||||||||    
T  16279156 agatgttaatgtgtcaagtgtaagttaaaattttata 16279120  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 28365735 - 28365771
Alignment:
Q  126 agatgttaatgtgtcaagtgtgagttaaaattttata 162  Q
    ||||||||||||||||||||| |||||||||||||||    
T  28365735 agatgttaatgtgtcaagtgtaagttaaaattttata 28365771  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 156
Target Start/End: Original strand, 1599691 - 1599722
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaat 156  Q
    ||||||||||||||||||||||||||||||||    
T  1599691 gagatgttaatgtgtcaagtgtgagttaaaat 1599722  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 391
Target Start/End: Complemental strand, 4790763 - 4790646
Alignment:
Q  274 atctcacttgtatggtatctcttagtctaatatggtgataatactcagtgtaagatcccttggaagtcccaaagttatgatgaattgttttgttagcttt 373  Q
    |||||||||||  ||| ||||||| ||||| |||||||| | ||||  || |  ||||| | ||| || |||| | |||||||| ||||||||||| |||    
T  4790763 atctcacttgtgaggtttctcttaatctaagatggtgatcaaactctatgcagaatcccctagaaatctcaaaatcatgatgaactgttttgttagtttt 4790664  T
Q  374 tatatctcatttatttaa 391  Q
    ||||| | ||||||||||    
T  4790663 tatatgtaatttatttaa 4790646  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 9449706 - 9449661
Alignment:
Q  107 agttgcaaacttgaataggagatgttaatgtgtcaagtgtgagtta 152  Q
    ||||||| |||||| || |||||||||| |||||||||||||||||    
T  9449706 agttgcacacttgattaagagatgttaacgtgtcaagtgtgagtta 9449661  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 16705606 - 16705671
Alignment:
Q  115 acttgaataggagatgttaatgtgtcaagtgtgagttaaaattttatagtggatataagagtaaat 180  Q
    |||||||||  |||||||||||||||||  ||||||| || ||| ||| ||||| |||||||||||    
T  16705606 acttgaataaaagatgttaatgtgtcaaacgtgagttgaagtttcataatggatttaagagtaaat 16705671  T

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Target: scaffold0051 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 366
Target Start/End: Original strand, 12677 - 12792
Alignment:
Q  251 ttttgtgtgaatatgtgatatttatctcacttgtatggtatctcttagtctaatatggtgataatactcagtgtaagatcccttggaagtcccaaagtta 350  Q
    ||||| ||||| || ||||||  |||||| |||| |||| |||||| |||||| |||||||| | ||||| |||| ||||| | ||||||||||||  ||    
T  12677 ttttgggtgaacatttgatatcaatctcatttgtgtggtttctcttggtctaacatggtgattaaactcaatgtatgatccgtaggaagtcccaaacata 12776  T
Q  351 tgatgaattgttttgt 366  Q
    |||||||| |||||||    
T  12777 tgatgaatcgttttgt 12792  T

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Target: scaffold1345 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 1857 - 1894
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaattttata 162  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1857 gagatgttaatgtgtcaagtgtgagttaaaattttata 1894  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 43989691 - 43989728
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaattttata 162  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43989691 gagatgttaatgtgtcaagtgtgagttaaaattttata 43989728  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 6198481 - 6198521
Alignment:
Q  195 tagattatgaataacatataagtgagatgactcatttacat 235  Q
    ||||| ||||||||||||||||||| ||||||||| |||||    
T  6198481 tagatgatgaataacatataagtgaaatgactcatatacat 6198521  T

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Target: scaffold1750 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 361 - 324
Alignment:
Q  125 gagatgttaatgtgtcaagtgtgagttaaaattttata 162  Q
    |||||||||||||| |||||||||||||||||||||||    
T  361 gagatgttaatgtggcaagtgtgagttaaaattttata 324  T

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