View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1129_high_2 (Length: 722)

Name: NF1129_high_2
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1129_high_2
NF1129_high_2
[»] chr4 (32 HSPs)
chr4 (71-707)||(7723171-7723807)
chr4 (565-651)||(6659332-6659419)
chr4 (565-651)||(19935487-19935574)
chr4 (267-359)||(7716453-7716545)
chr4 (267-361)||(7522087-7522181)
chr4 (576-652)||(13991391-13991469)
chr4 (565-647)||(40206153-40206236)
chr4 (267-361)||(7484030-7484124)
chr4 (162-219)||(7130019-7130075)
chr4 (565-653)||(24667655-24667744)
chr4 (257-305)||(7493005-7493053)
chr4 (267-359)||(7720283-7720375)
chr4 (155-250)||(7519109-7519203)
chr4 (576-652)||(17254895-17254973)
chr4 (581-652)||(54700614-54700687)
chr4 (152-200)||(7493115-7493163)
chr4 (152-200)||(7502091-7502139)
chr4 (574-648)||(18657052-18657128)
chr4 (601-651)||(38888028-38888079)
chr4 (576-645)||(50515907-50515978)
chr4 (565-652)||(7634079-7634167)
chr4 (609-654)||(21433610-21433655)
chr4 (96-132)||(7493206-7493242)
chr4 (257-305)||(7501019-7501067)
chr4 (96-132)||(7502182-7502218)
chr4 (267-359)||(7502621-7502713)
chr4 (569-653)||(7724082-7724165)
chr4 (601-651)||(18689559-18689610)
chr4 (614-652)||(13990729-13990767)
chr4 (580-648)||(22486792-22486861)
chr4 (614-651)||(9260573-9260610)
chr4 (601-653)||(10494901-10494954)
[»] chr2 (24 HSPs)
chr2 (565-651)||(36647293-36647380)
chr2 (565-654)||(15129387-15129477)
chr2 (565-651)||(27952319-27952407)
chr2 (574-653)||(23457644-23457725)
chr2 (565-651)||(22011436-22011524)
chr2 (565-651)||(33655628-33655715)
chr2 (565-648)||(2155970-2156055)
chr2 (565-652)||(33051617-33051706)
chr2 (565-651)||(27956155-27956243)
chr2 (565-651)||(31636337-31636425)
chr2 (576-652)||(5171597-5171675)
chr2 (576-653)||(12966475-12966553)
chr2 (576-653)||(21772373-21772451)
chr2 (565-648)||(31634107-31634192)
chr2 (576-646)||(28737911-28737982)
chr2 (565-653)||(1518191-1518280)
chr2 (576-651)||(4184929-4185006)
chr2 (601-652)||(32162007-32162059)
chr2 (648-707)||(27955588-27955647)
chr2 (576-647)||(8294582-8294655)
chr2 (580-647)||(28737841-28737910)
chr2 (565-651)||(32163773-32163860)
chr2 (605-646)||(23456580-23456622)
chr2 (601-646)||(2165899-2165944)
[»] chr8 (26 HSPs)
chr8 (565-651)||(2189723-2189810)
chr8 (575-649)||(42890394-42890469)
chr8 (565-651)||(42891665-42891753)
chr8 (565-648)||(24731035-24731120)
chr8 (565-651)||(22921851-22921939)
chr8 (565-647)||(24731231-24731315)
chr8 (565-653)||(18468647-18468736)
chr8 (565-651)||(6845336-6845424)
chr8 (565-651)||(22512047-22512135)
chr8 (565-651)||(22519347-22519435)
chr8 (565-651)||(22926649-22926737)
chr8 (565-651)||(37189866-37189954)
chr8 (587-651)||(23570584-23570649)
chr8 (609-652)||(2687741-2687784)
chr8 (577-651)||(26374900-26374975)
chr8 (648-707)||(42890989-42891048)
chr8 (601-651)||(23573583-23573633)
chr8 (587-654)||(16598246-16598315)
chr8 (587-651)||(22520823-22520888)
chr8 (565-621)||(26378031-26378088)
chr8 (603-653)||(2689144-2689195)
chr8 (576-653)||(14130163-14130242)
chr8 (576-653)||(20693797-20693876)
chr8 (648-707)||(42891109-42891168)
chr8 (614-651)||(2609547-2609584)
chr8 (648-707)||(23571093-23571151)
[»] chr1 (22 HSPs)
chr1 (565-653)||(31915548-31915637)
chr1 (565-651)||(8931220-8931308)
chr1 (577-652)||(12944115-12944192)
chr1 (565-651)||(50857445-50857533)
chr1 (590-648)||(13444015-13444074)
chr1 (576-653)||(28660758-28660837)
chr1 (575-653)||(31913375-31913454)
chr1 (576-651)||(9031017-9031094)
chr1 (565-644)||(40058103-40058184)
chr1 (580-651)||(50713713-50713786)
chr1 (609-644)||(10927199-10927234)
chr1 (580-647)||(43681465-43681535)
chr1 (576-652)||(10925739-10925814)
chr1 (576-651)||(10928289-10928366)
chr1 (654-707)||(13443411-13443464)
chr1 (576-651)||(28661080-28661157)
chr1 (601-653)||(33152757-33152810)
chr1 (576-646)||(23987581-23987653)
chr1 (576-653)||(239685-239764)
chr1 (579-652)||(8221487-8221562)
chr1 (608-654)||(8967850-8967896)
chr1 (601-646)||(26981516-26981561)
[»] chr7 (29 HSPs)
chr7 (565-651)||(13882687-13882775)
chr7 (565-648)||(5934607-5934691)
chr7 (565-648)||(13886160-13886245)
chr7 (568-652)||(30217814-30217898)
chr7 (565-651)||(859157-859245)
chr7 (565-651)||(1217161-1217249)
chr7 (576-653)||(3778721-3778799)
chr7 (565-653)||(4888687-4888776)
chr7 (577-654)||(1883486-1883565)
chr7 (587-652)||(27309638-27309705)
chr7 (576-652)||(11000838-11000916)
chr7 (582-654)||(1365669-1365742)
chr7 (601-653)||(24840141-24840194)
chr7 (601-653)||(27142664-27142717)
chr7 (576-653)||(1369803-1369882)
chr7 (565-652)||(1874537-1874626)
chr7 (570-651)||(1220446-1220529)
chr7 (605-654)||(1753640-1753690)
chr7 (601-644)||(8063842-8063885)
chr7 (576-652)||(4133286-4133364)
chr7 (565-653)||(7803032-7803122)
chr7 (601-654)||(11228978-11229032)
chr7 (609-654)||(1786680-1786725)
chr7 (576-651)||(6451762-6451839)
chr7 (572-653)||(13466729-13466812)
chr7 (586-652)||(35814870-35814937)
chr7 (614-652)||(11228720-11228758)
chr7 (565-652)||(8916379-8916467)
chr7 (619-648)||(13886245-13886274)
[»] chr6 (20 HSPs)
chr6 (565-651)||(3536034-3536122)
chr6 (565-651)||(3542245-3542333)
chr6 (579-647)||(11658936-11659005)
chr6 (572-646)||(8048974-8049049)
chr6 (565-653)||(27822119-27822209)
chr6 (582-653)||(14238434-14238507)
chr6 (568-651)||(29340810-29340895)
chr6 (565-647)||(30049920-30050004)
chr6 (565-651)||(33615505-33615593)
chr6 (601-647)||(30052207-30052253)
chr6 (576-644)||(18727115-18727184)
chr6 (576-651)||(12882123-12882200)
chr6 (565-644)||(18718201-18718279)
chr6 (568-643)||(22889268-22889345)
chr6 (568-643)||(22910810-22910887)
chr6 (584-647)||(1127258-1127323)
chr6 (566-598)||(8047390-8047422)
chr6 (568-643)||(22873822-22873897)
chr6 (609-654)||(24443118-24443163)
chr6 (601-645)||(33215201-33215246)
[»] chr3 (11 HSPs)
chr3 (565-651)||(5128909-5128997)
chr3 (565-651)||(43303961-43304049)
chr3 (565-651)||(43306673-43306761)
chr3 (565-653)||(2472690-2472779)
chr3 (565-651)||(3063738-3063826)
chr3 (565-651)||(3068876-3068964)
chr3 (648-707)||(43306216-43306275)
chr3 (565-652)||(365594-365682)
chr3 (576-654)||(33175832-33175912)
chr3 (576-654)||(52708841-52708921)
chr3 (601-644)||(45168358-45168401)
[»] chr5 (8 HSPs)
chr5 (564-651)||(21848965-21849054)
chr5 (609-653)||(19497351-19497395)
chr5 (565-651)||(40778787-40778875)
chr5 (582-651)||(492567-492638)
chr5 (576-654)||(22440855-22440934)
chr5 (612-652)||(18252415-18252455)
chr5 (576-652)||(26140342-26140420)
chr5 (605-653)||(9868447-9868496)
[»] scaffold0054 (3 HSPs)
scaffold0054 (577-648)||(37714-37786)
scaffold0054 (601-654)||(49319-49372)
scaffold0054 (568-643)||(10663-10740)
[»] scaffold0531 (1 HSPs)
scaffold0531 (572-646)||(11597-11672)
[»] scaffold0251 (1 HSPs)
scaffold0251 (565-653)||(9700-9791)
[»] scaffold0110 (2 HSPs)
scaffold0110 (565-635)||(46734-46806)
scaffold0110 (610-651)||(45310-45351)
[»] scaffold0240 (3 HSPs)
scaffold0240 (575-648)||(14850-14924)
scaffold0240 (585-652)||(1657-1725)
scaffold0240 (580-647)||(16051-16119)
[»] scaffold0024 (1 HSPs)
scaffold0024 (576-652)||(145733-145811)
[»] scaffold0236 (1 HSPs)
scaffold0236 (577-653)||(16396-16473)
[»] scaffold0330 (1 HSPs)
scaffold0330 (585-652)||(17639-17707)


Alignment Details
Target: chr4 (Bit Score: 585; Significance: 0; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 71 - 707
Target Start/End: Original strand, 7723171 - 7723807
Alignment:
Q  71 actagcaagcactatcaaaagcaatagcaataatggatagataatgtatgtgcagaatatgacatccctnnnnnnnngtactgagtcatgaggtcacaaa 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  7723171 actagcaagcactatcaaaagcaatagcaataatggatagataatgtatgtgcagaatatgacatccctaaaaaaaagtactgagtcatgaggtcacaaa 7723270  T
Q  171 ttcaatacaaaagtgagctaacaaaagatgtgagaccctatgcaaaaagcatatactgttaattggaattagaataatgcttagcaaataaccatcaatt 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7723271 ttcaatacaaaagtgagctaacaaaagatgtgagaccctatgcaaaaagcatatactgttaattggaattagaataatgcttagcaaataaccatcaatt 7723370  T
Q  271 gaaattagattataacaatcttgaatccttaagttttcaagactgttaaactgattacaacaaccctttgaaatttcttctttgctacactatcctttaa 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7723371 gaaattagattataacaatcttgaatccttaagttttcaagactgttaaactgattacaacaaccctttgaaatttcttctttgctacactatcctttaa 7723470  T
Q  371 gattatgtaactcaatcagatctatgtctttgagtgattcaaaaaaggttgatgctatccactctaggaaaggtaaatatccataattttaatttcgttc 470  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7723471 gattatgtaactcaatcagatctatgtctttgagtgattcagaaaaggttgatgctatccactctaggcaaggtaaatatccataattttaatttcgttc 7723570  T
Q  471 caattcaatgtcaagcaaccaatcattccaaacctcttaccacaaactatttaatcaccttctccctcgggggaaggttgttacgatccttaacgacgca 570  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7723571 caattcaatgtcaagcaaccaagcattccaaacctcttaccacaaactatttaatcaccttctccctcgggggaaggttgttacgatccttaacgacgca 7723670  T
Q  571 gtacagaagcgtaggctagcaagcactaaactagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttccacagacgttggaaacgc 670  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  7723671 gtacagaagcgtaggctagcaagcgctaaactagattgaaaagaacaagtttgcaagctacaaacttgtgaaaatagggttccacagacgtcggaaacgc 7723770  T
Q  671 ttcagtcgtctgagcaacgtcgatctcctcttgcaac 707  Q
    ||| |||||||||||||||||||||||||||||||||    
T  7723771 ttcggtcgtctgagcaacgtcgatctcctcttgcaac 7723807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 6659332 - 6659419
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaa-ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| |||| ||||| |||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6659332 gacgcagtacggaagtgtaggttagcaagcgctaaatctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 6659419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 565 - 651
Target Start/End: Complemental strand, 19935574 - 19935487
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaact-agattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||||||||||||||||||| ||| ||||||| |||| ||||| || || |||||||||||||||||| |||||||||||||    
T  19935574 gacgcagtacagaagcgtaggctagccagcgctaaactcagatagaaaaaaataaatttgcaagcgacaaacttatgaaaatagggtt 19935487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 267 - 359
Target Start/End: Original strand, 7716453 - 7716545
Alignment:
Q  267 aattgaaattagattataacaatcttgaatccttaagttttcaagactgttaaactgattacaacaaccctttgaaatttcttctttgctaca 359  Q
    |||||||| ||||||||||||||||||||| | |||||||||||| || | |||||||| |||||| ||| |||| |||||||||| ||||||    
T  7716453 aattgaaactagattataacaatcttgaatacataagttttcaagtctttcaaactgatgacaacagccccttgagatttcttcttcgctaca 7716545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 267 - 361
Target Start/End: Complemental strand, 7522181 - 7522087
Alignment:
Q  267 aattgaaattagattataacaatcttgaatccttaagttttcaagactgttaaactgattacaacaaccctttgaaatttcttctttgctacact 361  Q
    |||||||| ||| ||||||||||| | |||| ||||| |||||||||| | |||||||| |||||||||| |||| |||||||||| ||||||||    
T  7522181 aattgaaactagcttataacaatcattaatcattaaggtttcaagactctgaaactgatgacaacaaccccttgagatttcttcttcgctacact 7522087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 576 - 652
Target Start/End: Original strand, 13991391 - 13991469
Alignment:
Q  576 gaagcgtaggctagcaagcactaaa-ctagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| || ||||||| |||||    
T  13991391 gaagcgtaggctagcaagcgctaaatctagattgaaaagaaacaagtttgcaagcgacaaacatgcgaaaataaggttc 13991469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 565 - 647
Target Start/End: Complemental strand, 40206236 - 40206153
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaa-ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 647  Q
    |||||| ||| ||||||||||||||||||| ||||| ||| |||||||   ||||||| |||||||||||||||||||||||||    
T  40206236 gacgcactacggaagcgtaggctagcaagcgctaaatctaaattgaaagagacaagttcgcaagcgacaaacttgtgaaaatag 40206153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 267 - 361
Target Start/End: Complemental strand, 7484124 - 7484030
Alignment:
Q  267 aattgaaattagattataacaatcttgaatccttaagttttcaagactgttaaactgattacaacaaccctttgaaatttcttctttgctacact 361  Q
    |||||||| ||| ||||||||||| | ||||  |||| |||||||||| | |||||||| |||||||||| |||| |||||||||| ||||||||    
T  7484124 aattgaaactagcttataacaatcattaatcaataaggtttcaagactctgaaactgatgacaacaaccccttgagatttcttcttcgctacact 7484030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 7130019 - 7130075
Alignment:
Q  162 ggtcacaaattcaatacaaaagtgagctaacaaaagatgtgagaccctatgcaaaaag 219  Q
    |||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  7130019 ggtcacaaattcaatacaagggtgagctaacaaaagatgtgaga-cctatgcaaaaag 7130075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 565 - 653
Target Start/End: Complemental strand, 24667744 - 24667655
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    |||||||||  |||||||||||||||||||  ||||| ||||| |||||||| ||| | ||| || ||||||||||||||||||||||||    
T  24667744 gacgcagtatggaagcgtaggctagcaagcgttaaacctagatagaaaagaagaagctcgcaggcaacaaacttgtgaaaatagggttcc 24667655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 7493053 - 7493005
Alignment:
Q  257 aataaccatcaattgaaattagattataacaatcttgaatccttaagtt 305  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  7493053 aataaccatcaattgaaattagattttaacaatcatgaatccttaagtt 7493005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 267 - 359
Target Start/End: Original strand, 7720283 - 7720375
Alignment:
Q  267 aattgaaattagattataacaatcttgaatccttaagttttcaagactgttaaactgattacaacaaccctttgaaatttcttctttgctaca 359  Q
    |||||||| ||||||| ||||| |   ||| | |||| ||||||||||||||||||||| |||||||||| |||| |||||||||| ||||||    
T  7720283 aattgaaactagattacaacaaacagaaatacataagctttcaagactgttaaactgatgacaacaaccccttgagatttcttcttcgctaca 7720375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 250
Target Start/End: Complemental strand, 7519203 - 7519109
Alignment:
Q  155 gtcatgaggtcacaaattcaatacaaaagtgagctaacaaaagatgtgagaccctatgcaaaaagcatatactgttaattggaattagaataatgc 250  Q
    |||||| ||||||||||| |  ||||  |||| |||||| ||||||||||||| |||||||||||||| |||| |||| |||| ||||||||||||    
T  7519203 gtcatggggtcacaaatttagaacaatggtgaactaacataagatgtgagacc-tatgcaaaaagcatttactattaaatggatttagaataatgc 7519109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 576 - 652
Target Start/End: Original strand, 17254895 - 17254973
Alignment:
Q  576 gaagcgtaggctagcaagcactaaact-agattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    ||||||||||||||||| | ||||||| |||||||| | |||||| ||| |||||||||||||||||||||||| ||||    
T  17254895 gaagcgtaggctagcaaacgctaaacttagattgaagatgaacaaattttcaagcgacaaacttgtgaaaatagagttc 17254973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 581 - 652
Target Start/End: Original strand, 54700614 - 54700687
Alignment:
Q  581 gtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    |||||||||||| | |||||| || ||||||||||| |||||||||||| ||||||||||||| ||||||||||    
T  54700614 gtaggctagcaaacgctaaacctatattgaaaagaaacaagtttgcaagtgacaaacttgtgagaatagggttc 54700687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 7493163 - 7493115
Alignment:
Q  152 tgagtcatgaggtcacaaattcaatacaaaagtgagctaacaaaagatg 200  Q
    ||||||||| |||||||||||||||||||| |||| |||||||||||||    
T  7493163 tgagtcatgcggtcacaaattcaatacaaaggtgaactaacaaaagatg 7493115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 7502139 - 7502091
Alignment:
Q  152 tgagtcatgaggtcacaaattcaatacaaaagtgagctaacaaaagatg 200  Q
    ||||||||| |||||||||||||||||||| |||| |||||||||||||    
T  7502139 tgagtcatggggtcacaaattcaatacaaaggtgaactaacaaaagatg 7502091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 648
Target Start/End: Original strand, 18657052 - 18657128
Alignment:
Q  574 cagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaa-gtttgcaagcgacaaacttgtgaaaatagg 648  Q
    |||||||||| |||||  |||||||||| |||||||||||||| || ||||||| ||||||||||||| ||||||||    
T  18657052 cagaagcgtaagctagagagcactaaacctagattgaaaagaaaaaagtttgcatgcgacaaacttgtaaaaatagg 18657128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 601 - 651
Target Start/End: Original strand, 38888028 - 38888079
Alignment:
Q  601 ctagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||||| || ||| ||||||||||||||||||||||||||||||||    
T  38888028 ctagattgaaaataaacaaatttgcaagcgacaaacttgtgaaaatagggtt 38888079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 576 - 645
Target Start/End: Original strand, 50515907 - 50515978
Alignment:
Q  576 gaagcgtaggctagcaagcactaaact-agattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 645  Q
    |||||| |||||||||||| ||| ||| ||| ||| ||||| ||||||||||||||||||||||||||||||    
T  50515907 gaagcggaggctagcaagcgctacacttagactgagaagaaacaagtttgcaagcgacaaacttgtgaaaat 50515978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 565 - 652
Target Start/End: Complemental strand, 7634167 - 7634079
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaag-aacaagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    |||||||| |||||||||| ||||| ||||  ||||| |||||||||||| ||||||||||||| ||| ||||||||| |||||| ||||    
T  7634167 gacgcagt-cagaagcgtatgctagtaagcgttaaacctagattgaaaaggaacaagtttgcaaacgataaacttgtggaaatagagttc 7634079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 609 - 654
Target Start/End: Original strand, 21433610 - 21433655
Alignment:
Q  609 aaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcca 654  Q
    |||||||||| || ||||||||||||||| ||||||||||||||||    
T  21433610 aaaagaacaaattcgcaagcgacaaacttatgaaaatagggttcca 21433655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 7493242 - 7493206
Alignment:
Q  96 agcaataatggatagataatgtatgtgcagaatatga 132  Q
    |||||||||||||||||| ||||||||||||||||||    
T  7493242 agcaataatggatagatagtgtatgtgcagaatatga 7493206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 7501067 - 7501019
Alignment:
Q  257 aataaccatcaattgaaattagattataacaatcttgaatccttaagtt 305  Q
    |||||||||||||| |||||||||| ||| |||| ||||||||||||||    
T  7501067 aataaccatcaatttaaattagattttaataatcatgaatccttaagtt 7501019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 7502218 - 7502182
Alignment:
Q  96 agcaataatggatagataatgtatgtgcagaatatga 132  Q
    |||||||||||||||||| ||||||||||||||||||    
T  7502218 agcaataatggatagatagtgtatgtgcagaatatga 7502182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 267 - 359
Target Start/End: Complemental strand, 7502713 - 7502621
Alignment:
Q  267 aattgaaattagattataacaatcttgaatccttaagttttcaagactgttaaactgattacaacaaccctttgaaatttcttctttgctaca 359  Q
    |||||||| ||| ||||||||||| | ||||  ||||| ||||| ||| | | |||||| || ||||||| |||| |||||||||||||||||    
T  7502713 aattgaaactagcttataacaatcatcaatcgataagtattcaatactctgagactgatgactacaaccccttgagatttcttctttgctaca 7502621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 653
Target Start/End: Original strand, 7724082 - 7724165
Alignment:
Q  569 cagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    |||||||||| |||| |||||||||  |||||| || ||||||||||| ||||||||| ||||||||||   |||||||||||||||    
T  7724082 cagtacagaaacgtatgctagcaagtgctaaacctatattgaaaagaagcaagtttgcgagcgacaaac---tgaaaatagggttcc 7724165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 651
Target Start/End: Original strand, 18689559 - 18689610
Alignment:
Q  601 ctagattgaaaagaacaa-gtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    ||||||||||||||| || ||||||| ||||||||||||| |||||||||||    
T  18689559 ctagattgaaaagaaaaaagtttgcatgcgacaaacttgtaaaaatagggtt 18689610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 614 - 652
Target Start/End: Original strand, 13990729 - 13990767
Alignment:
Q  614 aacaagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  13990729 aacaagtttgcaagtaacaaacttgtgaaaatagggttc 13990767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 580 - 648
Target Start/End: Original strand, 22486792 - 22486861
Alignment:
Q  580 cgtaggctagcaagcactaaac-tagattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagg 648  Q
    ||||||||||||||| |||||| || || ||||| || |||||||||||||||| ||||||||||||||||    
T  22486792 cgtaggctagcaagcgctaaacctatatagaaaaagaccaagtttgcaagcgac-aacttgtgaaaatagg 22486861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 651
Target Start/End: Complemental strand, 9260610 - 9260573
Alignment:
Q  614 aacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  9260610 aacaagtttgcaaacgacaaacttgcgaaaatagggtt 9260573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 601 - 653
Target Start/End: Complemental strand, 10494954 - 10494901
Alignment:
Q  601 ctagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    |||||| |||||||| |||||||||||| ||||||| ||||||||||| |||||    
T  10494954 ctagatggaaaagaaacaagtttgcaagtgacaaacctgtgaaaatagagttcc 10494901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 5e-30; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 565 - 651
Target Start/End: Complemental strand, 36647380 - 36647293
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| ||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36647380 gacgcagtacggaagcgtaggctagcaagcgctaaacctcgattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 36647293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 565 - 654
Target Start/End: Complemental strand, 15129477 - 15129387
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcca 654  Q
    |||| ||||| ||||||||||||||||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  15129477 gacgtagtacggaagcgtaggctagcaagcgctaaacctagatagaaaagaacaagttcgcaagcgacaaacttgtgaaaatagggttcca 15129387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 27952319 - 27952407
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27952319 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 27952407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 574 - 653
Target Start/End: Complemental strand, 23457725 - 23457644
Alignment:
Q  574 cagaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    |||||| |||||||||||||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  23457725 cagaagtgtaggctagcaagcgctaaacctagattgaaaataaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 23457644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 565 - 651
Target Start/End: Complemental strand, 22011524 - 22011436
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  22011524 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagtgacaaacttgtgaaaatagggtt 22011436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 565 - 651
Target Start/End: Complemental strand, 33655715 - 33655628
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| |||| ||||| |||||||| |||||| ||||| |||||  |||||||||||||||||||||||||||||||||||||    
T  33655715 gacgcagtacggaagtgtaggttagcaagcgctaaacctagatagaaaaatacaagtttgcaagcgacaaacttgtgaaaatagggtt 33655628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 565 - 648
Target Start/End: Complemental strand, 2156055 - 2155970
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 648  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||    
T  2156055 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcgagcgacaaacttgtgaaaatagg 2155970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 565 - 652
Target Start/End: Complemental strand, 33051706 - 33051617
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    |||| ||||| ||||| ||||||||||||| |||||| || |||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  33051706 gacgtagtacggaagcttaggctagcaagcgctaaacctaaattgaaaaagaacaagtttgcaagcgacaaacttttgaaaatagggttc 33051617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 27956155 - 27956243
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| |||||||||||||||||||||||||||| | |||||||||||||    
T  27956155 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacctatgaaaatagggtt 27956243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 565 - 651
Target Start/End: Complemental strand, 31636425 - 31636337
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||||    
T  31636425 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaactagtttgcaagcgacaaacttgtgaaaatatggtt 31636337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 576 - 652
Target Start/End: Original strand, 5171597 - 5171675
Alignment:
Q  576 gaagcgtaggctagcaagcactaaa-ctagattgaaaaga-acaagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    |||||||||| || ||||| ||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  5171597 gaagcgtaggttaacaagcgctaaatctagattgaaaagagacaagtttgcaagcgacaaacttgtaaaaatagggttc 5171675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 576 - 653
Target Start/End: Complemental strand, 12966553 - 12966475
Alignment:
Q  576 gaagcgtaggctagcaagcactaaa-ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    ||||| ||||||||||| |  |||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  12966553 gaagcataggctagcaaacgttaaatctagattgaaaagaacaagttcgcaagcgacgaacttgtgaaaatagggttcc 12966475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 576 - 653
Target Start/End: Complemental strand, 21772451 - 21772373
Alignment:
Q  576 gaagcgtaggctagcaagcactaaact-agattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    |||||||||| |||| | | ||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  21772451 gaagcgtaggttagccaacgctaaacttagattgaaaaaaacaagtttgcaagcgacaaacttatgaaaatagggttcc 21772373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 565 - 648
Target Start/End: Complemental strand, 31634192 - 31634107
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 648  Q
    |||||||||| |||||||||| | ||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||    
T  31634192 gacgcagtacggaagcgtagggttagcaaacgctaaacctagatagaaaagaacaagtttgctagcgacaaacttgtgaaaatagg 31634107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 576 - 646
Target Start/End: Complemental strand, 28737982 - 28737911
Alignment:
Q  576 gaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaata 646  Q
    ||||||||| ||||||||  |||||| ||||||||||||| |||||||||||||||||||||| ||||||||    
T  28737982 gaagcgtagtctagcaagtgctaaacctagattgaaaagagcaagtttgcaagcgacaaacttttgaaaata 28737911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 565 - 653
Target Start/End: Complemental strand, 1518280 - 1518191
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    |||||||||| ||||||||  ||||||||| || ||| |||||||||| | ||||||| ||||||||| ||||| |||||||||||||||    
T  1518280 gacgcagtacggaagcgtatcctagcaagcgcttaacctagattgaaagggacaagttcgcaagcgacgaacttatgaaaatagggttcc 1518191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 576 - 651
Target Start/End: Complemental strand, 4185006 - 4184929
Alignment:
Q  576 gaagcgtaggctagcaagcactaaac-tagattgaaaagaac-aagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    ||||||||||||| |||| ||||||  |||||| |||||||  ||||| |||||||||||||||||||||||||||||    
T  4185006 gaagcgtaggctaacaagtactaaatatagattcaaaagaaataagttcgcaagcgacaaacttgtgaaaatagggtt 4184929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 601 - 652
Target Start/End: Original strand, 32162007 - 32162059
Alignment:
Q  601 ctagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    |||||| |||||||| |||||||||||| ||||||||||||||||||||||||    
T  32162007 ctagatcgaaaagaaacaagtttgcaagtgacaaacttgtgaaaatagggttc 32162059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 648 - 707
Target Start/End: Original strand, 27955588 - 27955647
Alignment:
Q  648 ggttccacagacgttggaaacgcttcagtcgtctgagcaacgtcgatctcctcttgcaac 707  Q
    |||||||||||||| | ||||||||| |||||| ||||||||||||| ||||||| ||||    
T  27955588 ggttccacagacgtcgaaaacgcttcggtcgtccgagcaacgtcgatatcctctttcaac 27955647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 576 - 647
Target Start/End: Complemental strand, 8294655 - 8294582
Alignment:
Q  576 gaagcgtaggctagcaagcactaaact-agattgaa-aagaacaagtttgcaagcgacaaacttgtgaaaatag 647  Q
    ||||| ||||||||||||  ||||||| |||| ||| ||||||| ||||||||||||||||||||| |||||||    
T  8294655 gaagcataggctagcaagtgctaaacttagatagaagaagaacacgtttgcaagcgacaaacttgtaaaaatag 8294582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 647
Target Start/End: Complemental strand, 28737910 - 28737841
Alignment:
Q  580 cgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgac-aaacttgtgaaaatag 647  Q
    ||||||||||||||| |||||| || ||||||||||  ||||||||||| ||| ||||||||||||||||    
T  28737910 cgtaggctagcaagcgctaaacctaaattgaaaagagtaagtttgcaagagacaaaacttgtgaaaatag 28737841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 32163773 - 32163860
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaac-aagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||| |||||||| ||||||| ||||  ||||| ||||||||||||||  ||||||| ||||| |||||||||||||||| ||||    
T  32163773 gacgcagt-cagaagcgaaggctagaaagcgttaaacctagattgaaaagaaataagtttgtaagcgtcaaacttgtgaaaatatggtt 32163860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 605 - 646
Target Start/End: Complemental strand, 23456622 - 23456580
Alignment:
Q  605 attgaaaagaa-caagtttgcaagcgacaaacttgtgaaaata 646  Q
    ||||||||||| |||||||||||||||||||||| ||||||||    
T  23456622 attgaaaagaaacaagtttgcaagcgacaaacttttgaaaata 23456580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 601 - 646
Target Start/End: Complemental strand, 2165944 - 2165899
Alignment:
Q  601 ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaata 646  Q
    |||||| ||||||||||||||||||||| |||||||| | ||||||    
T  2165944 ctagatagaaaagaacaagtttgcaagcaacaaacttatcaaaata 2165899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 2189723 - 2189810
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| ||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2189723 gacgcagtacggaagcgtaggctagcaagcgctaaacctcgattgaaaagaacaagtttgcaagcgacaaacttgtgaaaataaggtt 2189810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 575 - 649
Target Start/End: Complemental strand, 42890469 - 42890394
Alignment:
Q  575 agaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaataggg 649  Q
    |||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42890469 agaagcgtaggctagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaataggg 42890394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 42891665 - 42891753
Alignment:
Q  565 gacgcagtacagaagcgtagg-ctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||| ||| |||||||||| ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42891665 gacgcaatacggaagcgtagggctagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 42891753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 565 - 648
Target Start/End: Complemental strand, 24731120 - 24731035
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaact-agattgaaaag-aacaagtttgcaagcgacaaacttgtgaaaatagg 648  Q
    |||||||||||||| ||||||||||||||| ||||| | ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  24731120 gacgcagtacagaaccgtaggctagcaagcgctaaatttagattgaaaaggaacaagtttgcaagcaacaaacttgtgaaaatagg 24731035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 22921851 - 22921939
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  22921851 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaataagtttgcaagcgacaaacttgtgaaaatagggtt 22921939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 565 - 647
Target Start/End: Complemental strand, 24731315 - 24731231
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaag-aacaagtttgcaagcgacaaacttgtgaaaatag 647  Q
    |||||||||| | ||||||||||||||||| |||||| |||||||||||| ||||||||||||||| ||||||||||||||||||    
T  24731315 gacgcagtacgggagcgtaggctagcaagcgctaaacctagattgaaaaggaacaagtttgcaagcaacaaacttgtgaaaatag 24731231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 565 - 653
Target Start/End: Complemental strand, 18468736 - 18468647
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    ||||||||||||||||   || |||||||| |||||| ||| | |||||||||||| |||||||||||||||||||||||||||||||||    
T  18468736 gacgcagtacagaagcaagggttagcaagcgctaaacctaggtagaaaagaacaagcttgcaagcgacaaacttgtgaaaatagggttcc 18468647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 565 - 651
Target Start/End: Complemental strand, 6845424 - 6845336
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||||    
T  6845424 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttacaagcgataaacttgtgaaaatagggtt 6845336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 22512047 - 22512135
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| |||| ||||| | ||||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  22512047 gacgcagtacggaagtgtagggttagcaagcgctaaacctaggtagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 22512135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 22519347 - 22519435
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| |||| ||||| | ||||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  22519347 gacgcagtacggaagtgtagggttagcaagcgctaaacctaggtagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 22519435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 22926649 - 22926737
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||| ||||| |||||||||| | || |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22926649 gacgtagtacggaagcgtagggttagaaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 22926737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 565 - 651
Target Start/End: Complemental strand, 37189954 - 37189866
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaa-ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| ||||| |||| | ||||||| ||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  37189954 gacgcagtacggaagcttagggttagcaagctctaaaactagatagaaaagaataagtttgcaagcgacaaacttgtgaaaatagggtt 37189866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 587 - 651
Target Start/End: Complemental strand, 23570649 - 23570584
Alignment:
Q  587 tagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  23570649 tagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaataaggtt 23570584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 609 - 652
Target Start/End: Complemental strand, 2687784 - 2687741
Alignment:
Q  609 aaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2687784 aaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttc 2687741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 577 - 651
Target Start/End: Complemental strand, 26374975 - 26374900
Alignment:
Q  577 aagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    ||||||| ||||||||||  ||| | |||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  26374975 aagcgtaagctagcaagcgttaagcctagattgaaaagaacaagttcgcaagcgacaaacttgtaaaaatagggtt 26374900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 648 - 707
Target Start/End: Complemental strand, 42891048 - 42890989
Alignment:
Q  648 ggttccacagacgttggaaacgcttcagtcgtctgagcaacgtcgatctcctcttgcaac 707  Q
    |||| ||||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||    
T  42891048 ggtttcacagacgtcggaaacgcttcggtcgtccgagcaacgtcgatctcctctttcaac 42890989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 601 - 651
Target Start/End: Complemental strand, 23573633 - 23573583
Alignment:
Q  601 ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||| ||||| ||||||||| ||||||||||||||||||||||||||||    
T  23573633 ctagatagaaaataacaagtttacaagcgacaaacttgtgaaaatagggtt 23573583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 587 - 654
Target Start/End: Complemental strand, 16598315 - 16598246
Alignment:
Q  587 tagcaagcactaaact-agattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcca 654  Q
    |||||||| ||||||| |||||  |||||| |||||||||| ||||||||||||||||||||||||||||    
T  16598315 tagcaagcgctaaacttagattagaaagaaacaagtttgcacgcgacaaacttgtgaaaatagggttcca 16598246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 587 - 651
Target Start/End: Original strand, 22520823 - 22520888
Alignment:
Q  587 tagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||| |||||| ||| | ||||||| ||||||||||||||||||| ||||||||||||||||    
T  22520823 tagcaagcgctaaacctaggtagaaaagatcaagtttgcaagcgacaaatttgtgaaaatagggtt 22520888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 565 - 621
Target Start/End: Complemental strand, 26378088 - 26378031
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaa-ctagattgaaaagaacaagtt 621  Q
    |||| ||||| ||||||||||||||||||| ||||| |||||||||||||||||||||    
T  26378088 gacgtagtacggaagcgtaggctagcaagcgctaaatctagattgaaaagaacaagtt 26378031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 603 - 653
Target Start/End: Complemental strand, 2689195 - 2689144
Alignment:
Q  603 agattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    ||||||||||||| |||||||||||||||||||  |||||||||||||||||    
T  2689195 agattgaaaagaaacaagtttgcaagcgacaaaactgtgaaaatagggttcc 2689144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 576 - 653
Target Start/End: Complemental strand, 14130242 - 14130163
Alignment:
Q  576 gaagcgtaggctagcaagcactaaa-ctagattgaaaaga-acaagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    |||||||||||| ||||||  |||| |||||| ||||||| |||||||||||||||| ||| ||||||||||| ||||||    
T  14130242 gaagcgtaggcttgcaagcgttaaatctagatcgaaaagagacaagtttgcaagcgataaatttgtgaaaataaggttcc 14130163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 576 - 653
Target Start/End: Complemental strand, 20693876 - 20693797
Alignment:
Q  576 gaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    ||||||||||||||| ||   ||||| ||||||||||| || ||||||||||||||||||| ||||||||||| ||||||    
T  20693876 gaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaatttgtgaaaatatggttcc 20693797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 648 - 707
Target Start/End: Original strand, 42891109 - 42891168
Alignment:
Q  648 ggttccacagacgttggaaacgcttcagtcgtctgagcaacgtcgatctcctcttgcaac 707  Q
    |||| ||||||||| ||||||||||| |||||  ||||||||||||||||||||| ||||    
T  42891109 ggtttcacagacgtcggaaacgcttcggtcgtacgagcaacgtcgatctcctctttcaac 42891168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 614 - 651
Target Start/End: Original strand, 2609547 - 2609584
Alignment:
Q  614 aacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||||||| |||||||||||||||||||||||    
T  2609547 aacaagtttgcaagtgacaaacttgtgaaaatagggtt 2609584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 707
Target Start/End: Complemental strand, 23571151 - 23571093
Alignment:
Q  648 ggttccacagacgttggaaacgcttcagtcgtctgagcaacgtcgatctcctcttgcaac 707  Q
    ||||||||| |||| |||||||||||||||||| ||| | ||||||||||||||| ||||    
T  23571151 ggttccaca-acgtcggaaacgcttcagtcgtccgagaagcgtcgatctcctctttcaac 23571093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 565 - 653
Target Start/End: Complemental strand, 31915637 - 31915548
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaact-agattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    |||| ||||| |||||| |||||||||||||||||||| || ||||||  ||||||||||||||||||||||||||||||||||||||||    
T  31915637 gacgtagtacggaagcgcaggctagcaagcactaaacttaggttgaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 31915548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 565 - 651
Target Start/End: Complemental strand, 8931308 - 8931220
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  8931308 gacgcagtacggaagcgtagggttagcaagcgctaaacctagattgaaaaaaacaagtttgcaagcgataaacttgtgaaaatagggtt 8931220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 577 - 652
Target Start/End: Complemental strand, 12944192 - 12944115
Alignment:
Q  577 aagcgtaggctagcaagcactaaa-ctagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    |||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||| ||||||||||||    
T  12944192 aagcgtaggctagcaagcgctaaatctagattgaaaagaaacaagtttgcaaacgacaaacttgtaaaaatagggttc 12944115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 50857445 - 50857533
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  50857445 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaataagtttgtaagcgacaaacttgtgaaaatagggtt 50857533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 590 - 648
Target Start/End: Original strand, 13444015 - 13444074
Alignment:
Q  590 caagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 648  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  13444015 caagcactaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 13444074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 576 - 653
Target Start/End: Original strand, 28660758 - 28660837
Alignment:
Q  576 gaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    |||||||||| |||||| | |||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||    
T  28660758 gaagcgtaggatagcaaacgctaaacctagatagataagaaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 28660837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 575 - 653
Target Start/End: Complemental strand, 31913454 - 31913375
Alignment:
Q  575 agaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    |||||| ||||||||||||| |||||| ||| ||||||  |||||||||||||||||||||||||| |||||||| ||||    
T  31913454 agaagcataggctagcaagcgctaaacctaggttgaaagaaacaagtttgcaagcgacaaacttgtaaaaataggtttcc 31913375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 576 - 651
Target Start/End: Complemental strand, 9031094 - 9031017
Alignment:
Q  576 gaagcgtaggctagcaagcactaaac-tagattgaaaag-aacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||||||||||| ||||||| || ||||||||| || |||||||||||| | |||||| |||||||||||||    
T  9031094 gaagcgtaggctagcaagtactaaacctatattgaaaaggaataagtttgcaagcaataaacttatgaaaatagggtt 9031017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 565 - 644
Target Start/End: Original strand, 40058103 - 40058184
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaa-ctagattgaaaag-aacaagtttgcaagcgacaaacttgtgaaaa 644  Q
    ||||| |||| |||||||||||||||||||| |||| ||| || |||||| || ||||||||||||||||||||| ||||||    
T  40058103 gacgcggtacggaagcgtaggctagcaagcagtaaacctaaatagaaaagaaataagtttgcaagcgacaaacttatgaaaa 40058184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 580 - 651
Target Start/End: Complemental strand, 50713786 - 50713713
Alignment:
Q  580 cgtaggctagcaagcactaaac-tagattgaaaaga-acaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    ||||||||| ||| | |||||| ||||||||||||| ||||||| ||| |||||||||||||||||||||||||    
T  50713786 cgtaggctaacaaccgctaaacctagattgaaaagagacaagttcgcaggcgacaaacttgtgaaaatagggtt 50713713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 609 - 644
Target Start/End: Complemental strand, 10927234 - 10927199
Alignment:
Q  609 aaaagaacaagtttgcaagcgacaaacttgtgaaaa 644  Q
    ||||||||||||||||||||||||||||||||||||    
T  10927234 aaaagaacaagtttgcaagcgacaaacttgtgaaaa 10927199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 580 - 647
Target Start/End: Complemental strand, 43681535 - 43681465
Alignment:
Q  580 cgtaggctagcaagcactaaac-tagattgaaaagaa--caagtttgcaagcgacaaacttgtgaaaatag 647  Q
    |||| |||||||||| |||||| ||||||||||| ||  ||||||||||||||||||| ||||||||||||    
T  43681535 cgtatgctagcaagcgctaaacctagattgaaaaaaaaacaagtttgcaagcgacaaatttgtgaaaatag 43681465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 576 - 652
Target Start/End: Complemental strand, 10925814 - 10925739
Alignment:
Q  576 gaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    |||||| |||||||||||| |||||| || ||||||||  |||| |||||||||||||||||||| |||||| |||||    
T  10925814 gaagcggaggctagcaagcgctaaacctaaattgaaaa--acaattttgcaagcgacaaacttgtaaaaatatggttc 10925739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 576 - 651
Target Start/End: Complemental strand, 10928366 - 10928289
Alignment:
Q  576 gaagcgtaggctagcaagcactaaac-tagattgaaaaga-acaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    ||||||||||||||||||  |||||| |||||| |||||| | ||||||| ||| |||||||||||||||||| ||||    
T  10928366 gaagcgtaggctagcaagtgctaaacctagattaaaaagatataagtttgtaagtgacaaacttgtgaaaataaggtt 10928289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 654 - 707
Target Start/End: Original strand, 13443411 - 13443464
Alignment:
Q  654 acagacgttggaaacgcttcagtcgtctgagcaacgtcgatctcctcttgcaac 707  Q
    ||||| |||| ||||||||| |||||| ||||||||||||||||||||| ||||    
T  13443411 acagatgttgaaaacgcttcggtcgtcagagcaacgtcgatctcctctttcaac 13443464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 576 - 651
Target Start/End: Original strand, 28661080 - 28661157
Alignment:
Q  576 gaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    ||||||||||||||||||  |||||| || ||||| ||||| ||||||||||||||| |||| ||| |||||||||||    
T  28661080 gaagcgtaggctagcaagtgctaaacctaaattgataagaaacaagtttgcaagcgaaaaacctgtaaaaatagggtt 28661157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 601 - 653
Target Start/End: Original strand, 33152757 - 33152810
Alignment:
Q  601 ctagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    ||||||||||||||| ||||||||||||||||||||||  || |||||||||||    
T  33152757 ctagattgaaaagaaacaagtttgcaagcgacaaacttacgacaatagggttcc 33152810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 576 - 646
Target Start/End: Complemental strand, 23987653 - 23987581
Alignment:
Q  576 gaagcgtaggctagcaagcactaaac-tagattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaata 646  Q
    |||||||||| |||||||| || ||| ||||| ||||| |||||| ||||||| |||||||||||||||||||    
T  23987653 gaagcgtagggtagcaagcgctgaacctagatagaaaaagaacaactttgcaaacgacaaacttgtgaaaata 23987581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 653
Target Start/End: Complemental strand, 239764 - 239685
Alignment:
Q  576 gaagcgtaggctagcaagcactaaact-agattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    ||||||||||||||||||  ||||||| | ||| ||||||| |||||| ||||||| |||| || |||||||||||||||    
T  239764 gaagcgtaggctagcaagggctaaacttatattaaaaagaaacaagttagcaagcgtcaaatttatgaaaatagggttcc 239685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 579 - 652
Target Start/End: Complemental strand, 8221562 - 8221487
Alignment:
Q  579 gcgtaggctagcaagcactaaacta-gattgaaaaga-acaagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    |||||||||||| ||  |||||| | ||||||| ||| |||||||||||| |||||||||| ||||||||||||||    
T  8221562 gcgtaggctagctagtgctaaaccaagattgaatagagacaagtttgcaaacgacaaacttatgaaaatagggttc 8221487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 608 - 654
Target Start/End: Original strand, 8967850 - 8967896
Alignment:
Q  608 gaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcca 654  Q
    |||||||||||||||||||  ||||||| | ||||||||||||||||    
T  8967850 gaaaagaacaagtttgcaaatgacaaacctatgaaaatagggttcca 8967896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 601 - 646
Target Start/End: Complemental strand, 26981561 - 26981516
Alignment:
Q  601 ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaata 646  Q
    |||||||||||  ||||||||||||||||| |||||||| ||||||    
T  26981561 ctagattgaaagaaacaagtttgcaagcgaaaaacttgtaaaaata 26981516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 13882687 - 13882775
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13882687 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 13882775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 565 - 648
Target Start/End: Complemental strand, 5934691 - 5934607
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagg 648  Q
    |||||||| ||||||||||||||||||||| |||||| |||||||||||||| ||| |||||||||||||||||||||||||||||    
T  5934691 gacgcagt-cagaagcgtaggctagcaagcgctaaacctagattgaaaagaaacaaatttgcaagcgacaaacttgtgaaaatagg 5934607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 565 - 648
Target Start/End: Original strand, 13886160 - 13886245
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 648  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  13886160 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 13886245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 568 - 652
Target Start/End: Complemental strand, 30217898 - 30217814
Alignment:
Q  568 gcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    |||||| |||||||||||||||||||| |||||| |||||||||| ||||||||| ||||||||||||||||||||||||| ||||    
T  30217898 gcagtatagaagcgtaggctagcaagcgctaaacctagattgaaa-gaacaagttcgcaagcgacaaacttgtgaaaatagagttc 30217814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 859157 - 859245
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||| ||| |||||||||| | ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  859157 gacgcaatacggaagcgtaggattagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 859245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 1217161 - 1217249
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||| ||| |||||||||| | ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1217161 gacgcaatacggaagcgtaggattagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 1217249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 576 - 653
Target Start/End: Original strand, 3778721 - 3778799
Alignment:
Q  576 gaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    ||||||||||||  |||||||||||  |||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  3778721 gaagcgtaggctgacaagcactaaatatagattgaaatgaacaagtttgcaagcgagaaacttgtgaaaatagggttcc 3778799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 565 - 653
Target Start/End: Original strand, 4888687 - 4888776
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    |||||| ||| |||||||||||||||| || || ||| ||||| |||||||||||||||||||||||||||| ||||||||||| |||||    
T  4888687 gacgcaatacggaagcgtaggctagcatgcgctgaacctagatagaaaagaacaagtttgcaagcgacaaacctgtgaaaatagagttcc 4888776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 577 - 654
Target Start/End: Complemental strand, 1883565 - 1883486
Alignment:
Q  577 aagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcca 654  Q
    ||||||| |||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  1883565 aagcgtatgctagcaaacactaaacctagattgaaaagaaacaagtttgcaaacgacaaacttgtgaaaataaggttcca 1883486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 587 - 652
Target Start/End: Original strand, 27309638 - 27309705
Alignment:
Q  587 tagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    |||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27309638 tagcaagcgctaaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttc 27309705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 576 - 652
Target Start/End: Original strand, 11000838 - 11000916
Alignment:
Q  576 gaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    |||| |||||||||||||| |||||| |||||||||||||| |||||| |||||||||||||| |||||||||||||||    
T  11000838 gaagtgtaggctagcaagcgctaaacctagattgaaaagaaacaagttcgcaagcgacaaactagtgaaaatagggttc 11000916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 582 - 654
Target Start/End: Complemental strand, 1365742 - 1365669
Alignment:
Q  582 taggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcca 654  Q
    ||||||||||||| |||||| |||||||||| ||||||||||| ||||||  ||||||||||||||||||||||    
T  1365742 taggctagcaagcgctaaacctagattgaaaggaacaagtttgtaagcgatgaacttgtgaaaatagggttcca 1365669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 601 - 653
Target Start/End: Complemental strand, 24840194 - 24840141
Alignment:
Q  601 ctagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24840194 ctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 24840141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 601 - 653
Target Start/End: Complemental strand, 27142717 - 27142664
Alignment:
Q  601 ctagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27142717 ctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 27142664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 576 - 653
Target Start/End: Complemental strand, 1369882 - 1369803
Alignment:
Q  576 gaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    |||||| ||||||||||||  ||||| |||||||||||||| ||||||||||||||| |||||||| |||||||||||||    
T  1369882 gaagcggaggctagcaagcgttaaacctagattgaaaagaaacaagtttgcaagcgataaacttgttaaaatagggttcc 1369803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 565 - 652
Target Start/End: Complemental strand, 1874626 - 1874537
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    |||| ||||| |||||||| | |||||| |||||||| | |||||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  1874626 gacgtagtacggaagcgtatgttagcaaacactaaaccttgattgaaaagaaacaagtttgcaaacgacaaacttgtgaaaataaggttc 1874537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 570 - 651
Target Start/End: Original strand, 1220446 - 1220529
Alignment:
Q  570 agtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||||||||| | ||||| | |||||| || || |||| |||||||||||||| ||||||||||||||||||||||||    
T  1220446 agtacagaagcgtagggttagcaaacgctaaacctacatagaaatgaacaagtttgcaaacgacaaacttgtgaaaatagggtt 1220529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 605 - 654
Target Start/End: Original strand, 1753640 - 1753690
Alignment:
Q  605 attgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcca 654  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  1753640 attgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagagttcca 1753690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 601 - 644
Target Start/End: Original strand, 8063842 - 8063885
Alignment:
Q  601 ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaa 644  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  8063842 ctagattgaaaagaacaagtttgcaagcgataaatttgtgaaaa 8063885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 576 - 652
Target Start/End: Original strand, 4133286 - 4133364
Alignment:
Q  576 gaagcgtaggctagcaagcactaaact-agattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    |||||||||||||||||   ||||||| |||||||| | |||||| ||| |||||||||||||||||||||||| ||||    
T  4133286 gaagcgtaggctagcaaatgctaaacttagattgaagatgaacaaattttcaagcgacaaacttgtgaaaatagagttc 4133364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 565 - 653
Target Start/End: Original strand, 7803032 - 7803122
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    |||||||||| |||||||||| |||||||   ||||| ||| | |||||||| ||||||||||||| |||||||| |||||||| ||||||    
T  7803032 gacgcagtacggaagcgtaggttagcaagggttaaacctaggtcgaaaagaaacaagtttgcaagcaacaaacttatgaaaataaggttcc 7803122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 601 - 654
Target Start/End: Complemental strand, 11229032 - 11228978
Alignment:
Q  601 ctagattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggttcca 654  Q
    |||||||||||| ||||||||||||| ||||||||| |||||||| |||||||||    
T  11229032 ctagattgaaaaagaacaagtttgcaggcgacaaacgtgtgaaaaaagggttcca 11228978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 609 - 654
Target Start/End: Complemental strand, 1786725 - 1786680
Alignment:
Q  609 aaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcca 654  Q
    |||| |||||||||||||||||||||| || |||||||||||||||    
T  1786725 aaaataacaagtttgcaagcgacaaacatgcgaaaatagggttcca 1786680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 576 - 651
Target Start/End: Original strand, 6451762 - 6451839
Alignment:
Q  576 gaagcgtaggctagcaagcactaaa-ctagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||| | |||| ||||| ||||| ||||||||||| ||| |||||||||||||||||||| |||||||||| ||||    
T  6451762 gaagcgaaagctatcaagcgctaaatctagattgaaaggaaacaagtttgcaagcgacaaacctgtgaaaataaggtt 6451839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 653
Target Start/End: Complemental strand, 13466812 - 13466729
Alignment:
Q  572 tacagaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    |||||||| |||| ||||||||| |||||| || ||| ||||||| |||||||||||   |||||||| |||||||||||||||    
T  13466812 tacagaagagtagcctagcaagcgctaaacctatattaaaaagaaacaagtttgcaaaaaacaaacttatgaaaatagggttcc 13466729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 652
Target Start/End: Complemental strand, 35814937 - 35814870
Alignment:
Q  586 ctagcaagcactaaa-ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    ||||||| ||||||| |||||||||||  | ||| |||||||||||||||||||| |||||| |||||    
T  35814937 ctagcaaacactaaatctagattgaaagaaccaactttgcaagcgacaaacttgtaaaaataaggttc 35814870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 614 - 652
Target Start/End: Complemental strand, 11228758 - 11228720
Alignment:
Q  614 aacaagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  11228758 aacaagtttggaagcgacaaacttgtggaaatagggttc 11228720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 565 - 652
Target Start/End: Original strand, 8916379 - 8916467
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    |||||||| |||||||||| ||||| ||||  ||||| |||||| |||| |||||||||||||| ||| ||||||||| |||||| ||||    
T  8916379 gacgcagt-cagaagcgtatgctagtaagcgttaaacctagatttaaaatgaacaagtttgcaaacgataaacttgtggaaatagagttc 8916467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 648
Target Start/End: Original strand, 13886245 - 13886274
Alignment:
Q  619 gtttgcaagcgacaaacttgtgaaaatagg 648  Q
    ||||||||||||||||||||||||||||||    
T  13886245 gtttgcaagcgacaaacttgtgaaaatagg 13886274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 565 - 651
Target Start/End: Complemental strand, 3536122 - 3536034
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3536122 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 3536034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 565 - 651
Target Start/End: Complemental strand, 3542333 - 3542245
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  3542333 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgtaagcgacaaacttgtgaaaatagggtt 3542245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 579 - 647
Target Start/End: Complemental strand, 11659005 - 11658936
Alignment:
Q  579 gcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 647  Q
    ||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  11659005 gcgtaggttagcaagcactaaacctagattgaaaagaacaaatttgcaagcgataaacttgtgaaaatag 11658936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 572 - 646
Target Start/End: Original strand, 8048974 - 8049049
Alignment:
Q  572 tacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaata 646  Q
    |||||||||||||||||||||||| ||| | |||||| ||||||| ||||||||||| ||||||||||||||||||    
T  8048974 tacagaagcgtaggctagcaagcattaatcctagattaaaaagaaaaagtttgcaagtgacaaacttgtgaaaata 8049049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 565 - 653
Target Start/End: Original strand, 27822119 - 27822209
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaag-aacaagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    |||||||||| ||||||||||||||||| | |||||| || || |||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  27822119 gacgcagtacggaagcgtaggctagcaaacgctaaacctaaatagaaaaggaacaagttttcaagcgacaaacttgtgaaaacagggttcc 27822209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 582 - 653
Target Start/End: Complemental strand, 14238507 - 14238434
Alignment:
Q  582 taggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    ||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  14238507 taggctagcaaacactaaacataaattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaataaggttcc 14238434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 568 - 651
Target Start/End: Original strand, 29340810 - 29340895
Alignment:
Q  568 gcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    ||||||| |||||||||| | |||| || |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  29340810 gcagtacggaagcgtagggttagcaggcgctaaacctagatagaaaaaaacaagtttgcaagcgacaaacttgtgaaaatagggtt 29340895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 565 - 647
Target Start/End: Complemental strand, 30050004 - 30049920
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 647  Q
    |||||||||| |||||| ||| | ||||||| |||||| || || ||||||||||||||||||||||||||||||||||||||||    
T  30050004 gacgcagtacggaagcgaagggttagcaagcgctaaacctatatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 30049920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 33615505 - 33615593
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||| ||| ||| ||||||||| ||||| | |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  33615505 gacgcattacggaaacgtaggctaacaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 33615593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 601 - 647
Target Start/End: Complemental strand, 30052253 - 30052207
Alignment:
Q  601 ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 647  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  30052253 ctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 30052207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 576 - 644
Target Start/End: Complemental strand, 18727184 - 18727115
Alignment:
Q  576 gaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaa 644  Q
    ||||||||||||||||| | |||||| |||||||||||  ||||||| ||||||||||||||||||||||    
T  18727184 gaagcgtaggctagcaaacgctaaacctagattgaaaaacacaagttcgcaagcgacaaacttgtgaaaa 18727115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 576 - 651
Target Start/End: Complemental strand, 12882200 - 12882123
Alignment:
Q  576 gaagcgtaggctagcaagcactaaac-tagattgaaaaga-acaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    ||||||||| ||||||| |||| ||| |||||||| |||| ||||||||  |||||||||||||||||||||||||||    
T  12882200 gaagcgtagactagcaaacactgaacctagattgagaagagacaagttttaaagcgacaaacttgtgaaaatagggtt 12882123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 565 - 644
Target Start/End: Original strand, 18718201 - 18718279
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaa-ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaa 644  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||||||||  |||| || ||||  ||||||||||||||||    
T  18718201 gacgcagtacagaagtgtaggctagcaagcgctaaacctagattgaaaaagacaaattcgcaa--gacaaacttgtgaaaa 18718279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 568 - 643
Target Start/End: Complemental strand, 22889345 - 22889268
Alignment:
Q  568 gcagtacagaagcgtaggctagcaagcactaaa-ctagattgaaaaga-acaagtttgcaagcgacaaacttgtgaaa 643  Q
    |||||||||||||||||||||||||||  |||| |||||||||||| | |||||||||||  |||||||||| |||||    
T  22889345 gcagtacagaagcgtaggctagcaagctttaaacctagattgaaaaaagacaagtttgcattcgacaaacttatgaaa 22889268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 568 - 643
Target Start/End: Complemental strand, 22910887 - 22910810
Alignment:
Q  568 gcagtacagaagcgtaggctagcaagcactaaa-ctagattgaaaaga-acaagtttgcaagcgacaaacttgtgaaa 643  Q
    |||||||||||||||||||||||||||  |||| |||||||||||| | |||||||||||  |||||||||| |||||    
T  22910887 gcagtacagaagcgtaggctagcaagctttaaacctagattgaaaaaagacaagtttgcattcgacaaacttatgaaa 22910810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 584 - 647
Target Start/End: Complemental strand, 1127323 - 1127258
Alignment:
Q  584 ggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatag 647  Q
    ||||||| ||| |||||| |||||| ||||||| ||||||||||||||||||| ||||||||||||    
T  1127323 ggctagcgagcgctaaacctagattaaaaagaaacaagtttgcaagcgacaaatttgtgaaaatag 1127258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 598
Target Start/End: Original strand, 8047390 - 8047422
Alignment:
Q  566 acgcagtacagaagcgtaggctagcaagcacta 598  Q
    |||||||||||||||||||||||||||||||||    
T  8047390 acgcagtacagaagcgtaggctagcaagcacta 8047422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 568 - 643
Target Start/End: Complemental strand, 22873897 - 22873822
Alignment:
Q  568 gcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaaga-acaagtttgcaagcgacaaacttgtgaaa 643  Q
    ||||||||||  ||||||||||||||   ||||| || |||||||||| ||||||||||| |||||||||||||||||    
T  22873897 gcagtacaga--cgtaggctagcaagtgttaaacctaaattgaaaagagacaagtttgcatgcgacaaacttgtgaaa 22873822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 609 - 654
Target Start/End: Original strand, 24443118 - 24443163
Alignment:
Q  609 aaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcca 654  Q
    ||||||||| | ||||||||||||||||| | ||||||||||||||    
T  24443118 aaaagaacaggcttgcaagcgacaaacttataaaaatagggttcca 24443163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 601 - 645
Target Start/End: Original strand, 33215201 - 33215246
Alignment:
Q  601 ctagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaat 645  Q
    ||||||| ||||||| |||||||||||||||||||| |||||||||    
T  33215201 ctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 33215246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 565 - 651
Target Start/End: Complemental strand, 5128997 - 5128909
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    ||||||||||||||||||||| | |||| || |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5128997 gacgcagtacagaagcgtagggttagcaggcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 5128909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 43303961 - 43304049
Alignment:
Q  565 gacgcagtacagaagcgta-ggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| |||||||| || |||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43303961 gacgcagtacggaagcgtaaggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 43304049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 43306673 - 43306761
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  43306673 gacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcaacaaacttgtgaaaatagggtt 43306761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 565 - 653
Target Start/End: Original strand, 2472690 - 2472779
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    ||||||||||  |||||||||||||||||| |||||| || |||||||   |||||||||||| ||||||||||||||||||||||||||    
T  2472690 gacgcagtacgaaagcgtaggctagcaagcgctaaacctaaattgaaagagacaagtttgcaaccgacaaacttgtgaaaatagggttcc 2472779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 3063738 - 3063826
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    ||||||||||  ||||||||| | |||||||  ||||| ||||| ||||||||  ||||||||||||||||||||||||||||||||||    
T  3063738 gacgcagtacgaaagcgtagggttagcaagcgttaaacctagatagaaaagaaagagtttgcaagcgacaaacttgtgaaaatagggtt 3063826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 3068876 - 3068964
Alignment:
Q  565 gacgcagtacagaagcgta-ggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| |||||||| || |||||||| |||||| ||||| ||||||||||||||||||||  | |||||||| |||||||||||    
T  3068876 gacgcagtacggaagcgtatggttagcaagcgctaaacctagatagaaaagaacaagtttgcaaggaaaaaacttgtaaaaatagggtt 3068964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 648 - 707
Target Start/End: Original strand, 43306216 - 43306275
Alignment:
Q  648 ggttccacagacgttggaaacgcttcagtcgtctgagcaacgtcgatctcctcttgcaac 707  Q
    |||| ||||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||    
T  43306216 ggtttcacagacgtcggaaacgcttcggtcgtccgagcaacgtcgatctcctctttcaac 43306275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 565 - 652
Target Start/End: Original strand, 365594 - 365682
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    |||||| ||| ||||||||||||||||| | |||||| || |  ||||| ||||| ||  |||||||||||||||||||||||||||||    
T  365594 gacgcattacggaagcgtaggctagcaaacgctaaacctaaaaagaaaataacaaattcccaagcgacaaacttgtgaaaatagggttc 365682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 654
Target Start/End: Complemental strand, 33175912 - 33175832
Alignment:
Q  576 gaagcgtaggctagcaagcactaaac-tagattgaaaaga-acaagtttgcaagcgacaaacttgtgaaaatagggttcca 654  Q
    ||||||||||||||||| |  ||||| || |||||||||| ||||||||||||  ||||||||| ||||||||||||||||    
T  33175912 gaagcgtaggctagcaaacgataaacctatattgaaaagagacaagtttgcaaaggacaaacttatgaaaatagggttcca 33175832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 654
Target Start/End: Complemental strand, 52708921 - 52708841
Alignment:
Q  576 gaagcgtaggctagcaagcactaaac-tagattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggttcca 654  Q
    |||||||||| || ||||| |||||| ||||| ||||| |||||| ||||||||||| |||||||||||| ||||||||||    
T  52708921 gaagcgtaggttaacaagcgctaaacctagatagaaaaagaacaaatttgcaagcgataaacttgtgaaagtagggttcca 52708841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 601 - 644
Target Start/End: Original strand, 45168358 - 45168401
Alignment:
Q  601 ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaa 644  Q
    |||||||||||  |||||||||||||||||||||||||||||||    
T  45168358 ctagattgaaataaacaagtttgcaagcgacaaacttgtgaaaa 45168401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 564 - 651
Target Start/End: Original strand, 21848965 - 21849054
Alignment:
Q  564 cgacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    ||||||||||| |||||||||| | ||||||| | |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21848965 cgacgcagtacggaagcgtagggttagcaagcgccaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 21849054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 609 - 653
Target Start/End: Original strand, 19497351 - 19497395
Alignment:
Q  609 aaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19497351 aaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 19497395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 565 - 651
Target Start/End: Original strand, 40778787 - 40778875
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||| |||||| ||| | | ||||| |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  40778787 gacgcagtacggaagcgcagggttaacaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtaaaaatagggtt 40778875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 582 - 651
Target Start/End: Complemental strand, 492638 - 492567
Alignment:
Q  582 taggctagcaagcactaaact-agattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    ||||||||||||| ||||| | ||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  492638 taggctagcaagcgctaaatttagattgaaaagaaacaagtttgcaagcgacaaacttgtgaagatagggtt 492567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 576 - 654
Target Start/End: Complemental strand, 22440934 - 22440855
Alignment:
Q  576 gaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcca 654  Q
    ||||||||||||||||||  |||||| ||||| |||||||||| ||| ||||||||||||||| ||| ||||||||||||    
T  22440934 gaagcgtaggctagcaagtgctaaacctagatagaaaagaacatgttcgcaagcgacaaacttatgataatagggttcca 22440855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 612 - 652
Target Start/End: Complemental strand, 18252455 - 18252415
Alignment:
Q  612 agaacaagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  18252455 agaacaagtttgcaagcgacaaacctgtgaaaatagggttc 18252415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 576 - 652
Target Start/End: Complemental strand, 26140420 - 26140342
Alignment:
Q  576 gaagcgtaggctagcaagcactaaa-ctagattgaaa-agaacaagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    ||||| |||| |||||| | ||||| ||||||||||| | |||||| ||||||||||||||||| ||||||||||||||    
T  26140420 gaagcataggttagcaaacgctaaatctagattgaaagaaaacaagattgcaagcgacaaacttatgaaaatagggttc 26140342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 653
Target Start/End: Original strand, 9868447 - 9868496
Alignment:
Q  605 attgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    ||||||||||| ||||||| ||||| ||||||||||||||||||||||||    
T  9868447 attgaaaagaaacaagtttacaagcaacaaacttgtgaaaatagggttcc 9868496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 577 - 648
Target Start/End: Complemental strand, 37786 - 37714
Alignment:
Q  577 aagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 648  Q
    ||||||| ||||| |||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  37786 aagcgtaagctagaaagcgctaaacctagattgaaaagaacaagtttgcaagcgacaaacttatgaaaatagg 37714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 601 - 654
Target Start/End: Complemental strand, 49372 - 49319
Alignment:
Q  601 ctagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcca 654  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  49372 ctagattgagaagaacaagtttgcaagcgacaaacttatgaaaatagggttcca 49319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 568 - 643
Target Start/End: Complemental strand, 10740 - 10663
Alignment:
Q  568 gcagtacagaagcgtaggctagcaagcactaaa-ctagattgaaaaga-acaagtttgcaagcgacaaacttgtgaaa 643  Q
    |||||||||||||||||||||||||||  |||| |||||||||||| | |||||||||||  |||||||||| |||||    
T  10740 gcagtacagaagcgtaggctagcaagctttaaacctagattgaaaaaagacaagtttgcattcgacaaacttatgaaa 10663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 572 - 646
Target Start/End: Original strand, 11597 - 11672
Alignment:
Q  572 tacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaata 646  Q
    |||||||||||||||||||||||| ||| | |||||| ||||||| ||||||||||| ||||||||||||||||||    
T  11597 tacagaagcgtaggctagcaagcattaatcctagattaaaaagaaaaagtttgcaagtgacaaacttgtgaaaata 11672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 565 - 653
Target Start/End: Complemental strand, 9791 - 9700
Alignment:
Q  565 gacgcagtacagaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgac--aaacttgtgaaaatagggttcc 653  Q
    |||||| || ||||||||| ||||||||||  ||||| ||||||||||||||||||||| ||||||||  | ||||||||||||||||||||    
T  9791 gacgcattatagaagcgtatgctagcaagcggtaaacctagattgaaaagaacaagtttccaagcgactaacacttgtgaaaatagggttcc 9700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 565 - 635
Target Start/End: Original strand, 46734 - 46806
Alignment:
Q  565 gacgcagtacagaagcgtaggct-agcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaac 635  Q
    |||||||||| |||||||||| | ||||||| |||||| ||||| ||||||||||||||||||||||||||||    
T  46734 gacgcagtacggaagcgtagggtgagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaac 46806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 651
Target Start/End: Original strand, 45310 - 45351
Alignment:
Q  610 aaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 651  Q
    |||||||||||||||||||||||||||| |||||||| ||||    
T  45310 aaagaacaagtttgcaagcgacaaacttatgaaaataaggtt 45351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 575 - 648
Target Start/End: Complemental strand, 14924 - 14850
Alignment:
Q  575 agaagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 648  Q
    |||||||||||||||||||| |||||| | ||||||||  || ||||| |||||||| |||||||||||||||||    
T  14924 agaagcgtaggctagcaagcgctaaaccttgattgaaataaataagttggcaagcgaaaaacttgtgaaaatagg 14850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 585 - 652
Target Start/End: Complemental strand, 1725 - 1657
Alignment:
Q  585 gctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    ||||||||||  ||||| ||||||||||  ||||||||||||| |||||||||||| |||||| |||||    
T  1725 gctagcaagcgttaaacctagattgaaagaaacaagtttgcaaacgacaaacttgtcaaaatatggttc 1657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 580 - 647
Target Start/End: Complemental strand, 16119 - 16051
Alignment:
Q  580 cgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 647  Q
    ||||||||| ||||  |||||| ||||| |||||||||||||||||||| ||||||| | |||||||||    
T  16119 cgtaggctaacaagtgctaaacctagatagaaaagaacaagtttgcaagtgacaaacatctgaaaatag 16051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 576 - 652
Target Start/End: Complemental strand, 145811 - 145733
Alignment:
Q  576 gaagcgtaggctagcaagcactaaac-tagattgaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    |||| ||| |||||||| | |||||| ||||||||||| || |||||||||||||||||| ||||| ||||||||||||    
T  145811 gaagtgtaagctagcaatcgctaaacctagattgaaaaaaatcaagtttgcaagcgacaagcttgtaaaaatagggttc 145733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 577 - 653
Target Start/End: Complemental strand, 16473 - 16396
Alignment:
Q  577 aagcgtaggctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttcc 653  Q
    ||||||||| ||| || |||||||| |||||| |||| ||  ||||||||||||||||||||| |||||||| |||||    
T  16473 aagcgtaggttagtaaacactaaacctagattaaaaaaaatgagtttgcaagcgacaaacttgagaaaatagagttcc 16396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 585 - 652
Target Start/End: Complemental strand, 17707 - 17639
Alignment:
Q  585 gctagcaagcactaaac-tagattgaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttc 652  Q
    ||||||||||  ||||| ||||||||||  ||||||||||||| |||||||||||| |||||| |||||    
T  17707 gctagcaagcgttaaacctagattgaaagaaacaagtttgcaaacgacaaacttgtcaaaatatggttc 17639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University