View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1129_high_22 (Length: 408)

Name: NF1129_high_22
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1129_high_22
NF1129_high_22
[»] chr6 (5 HSPs)
chr6 (10-408)||(11755853-11756251)
chr6 (10-408)||(12093684-12094082)
chr6 (17-360)||(11739463-11739806)
chr6 (107-260)||(11618361-11618514)
chr6 (131-243)||(11631742-11631854)
[»] scaffold0196 (1 HSPs)
scaffold0196 (131-276)||(12697-12842)


Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 10 - 408
Target Start/End: Complemental strand, 11756251 - 11755853
Alignment:
Q  10 attatactcccatgaaaaatctgcagacttaattaaaattgagccctttaacttctcatcattgtagctctttctaacactagtagtttgaagctcaggt 109  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11756251 attatactcccatgaaaaatctgcagacttaattaaaattgaaccctttaacttctcatcattgtagctctttctgacactagtagtttgaagctcaggt 11756152  T
Q  110 gcctcgagaaatttcacaacccgagaaaaagcaacctttgcttgaatgatcactccaataacatctccaatggttgaaataggatcttgcacaaggcgca 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11756151 gcctcgagaaatttcacaacccgagaaaaagcaacctttgcttgaatgatcactccaataacatctcctatggttgaaataggatcttgcacaaggcgca 11756052  T
Q  210 cagtagtgataaatgtgaaaacattatttgcatggagaggaactttcaagaggtaacaagccaaaaaggtagctgcagagaccaaagtaggtgaaaacca 309  Q
    | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11756051 cggttgtgataaatgtgaaaacattatttgcatggagaggaactttcaagaggtaacaagccaaaaaggtagcagcagagaccaaagtaggtgaaaacca 11755952  T
Q  310 aaagagcataaggctgtatgccttttgtaatagcactgaagataacaatttttcttcaacaattcttaggatttcaatggaatttttaaaatgcatttc 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11755951 aaagagcataaggctgtatgccttttgtaatagcactgaagataacaatttttcttcaacaattcttaggatttcaatggaatttttaaaatgcatttc 11755853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 408
Target Start/End: Original strand, 12093684 - 12094082
Alignment:
Q  10 attatactcccatgaaaaatctgcagacttaattaaaattgagccctttaacttctcatcattgtagctctttctaacactagtagtttgaagctcaggt 109  Q
    |||||| ||||||||||||||||||||||| |||   ||||||||||||||||||||||| | | |||||||||| ||||||||||||||||||||||||    
T  12093684 attatattcccatgaaaaatctgcagacttgatttttattgagccctttaacttctcatcgtagcagctctttctgacactagtagtttgaagctcaggt 12093783  T
Q  110 gcctcgagaaatttcacaacccgagaaaaagcaacctttgcttgaatgatcactccaataacatctccaatggttgaaataggatcttgcacaaggcgca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12093784 gcctcgagaaatttcacaacccgagaaaaagcaacctttgcttgaatgatcactccaataacatctccaatggttgaaataggatcttgcacaaggcgca 12093883  T
Q  210 cagtagtgataaatgtgaaaacattatttgcatggagaggaactttcaagaggtaacaagccaaaaaggtagctgcagagaccaaagtaggtgaaaacca 309  Q
    | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12093884 cggttgtgataaatgtgaaaacattatttgcatggagaggaactttcaagaggtaacaagccaaaaaggtagcagcagagaccaaagtaggtgaaaacca 12093983  T
Q  310 aaagagcataaggctgtatgccttttgtaatagcactgaagataacaatttttcttcaacaattcttaggatttcaatggaatttttaaaatgcatttc 408  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12093984 aaagagaataaggctgtatgccttttgtaataacactgaagataacaatttttgttcaacaattcttaggatttcaatggaatttttaaaatgcatttc 12094082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 360
Target Start/End: Original strand, 11739463 - 11739806
Alignment:
Q  17 tcccatgaaaaatctgcagacttaattaaaattgagccctttaacttctcatcattgtagctctttctaacactagtagtttgaagctcaggtgcctcga 116  Q
    ||||||||||| || | |||||| |||||||||||||| || ||||| ||||||  | |  ||||||| | | | | | | || | ||||||||||||||    
T  11739463 tcccatgaaaagtcagaagacttgattaaaattgagccattcaacttttcatcaaagcaagtctttctgaaatttgaactctgcaactcaggtgcctcga 11739562  T
Q  117 gaaatttcacaacccgagaaaaagcaacctttgcttgaatgatcactccaataacatctccaatggttgaaataggatcttgcacaaggcgcacagtagt 216  Q
    | |||| ||||| ||||||||| ||||  |||||||||||||||||||||||||||||    ||||||||||| |||||||||| ||| || |  || |     
T  11739563 ggaattccacaatccgagaaaatgcaatatttgcttgaatgatcactccaataacatcagggatggttgaaattggatcttgcataagtcgtattgttgc 11739662  T
Q  217 gataaatgtgaaaacattatttgcatggagaggaactttcaagaggtaacaagccaaaaaggtagctgcagagaccaaagtaggtgaaaaccaaaagagc 316  Q
     | ||| ||||| | |||||| ||||| | |||||| ||||||| |||||| ||   ||| || || ||||||| ||||   ||||||||||| |||||     
T  11739663 cacaaaggtgaatatattattcgcatgtaaaggaacattcaagaagtaacatgcactaaatgtcgcagcagagatcaaaaacggtgaaaaccagaagaga 11739762  T
Q  317 ataaggctgtatgccttttgtaatagcactgaagataacaattt 360  Q
    || |   ||||||| ||||| | ||||||||||||||| |||||    
T  11739763 atgacattgtatgctttttgcagtagcactgaagataagaattt 11739806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 260
Target Start/End: Complemental strand, 11618514 - 11618361
Alignment:
Q  107 ggtgcctcgagaaatttcacaacccgagaaaaagcaacctttgcttgaatgatcactccaataacatctccaatggttgaaataggatcttgcacaaggc 206  Q
    |||||||| || || || |||| ||||| ||| ||||| || || ||||||||| || ||||||| |||   ||| ||| ||| |||||||| |||||||    
T  11618514 ggtgcctcaaggaaattaacaatccgagcaaatgcaactttcgcctgaatgatcgctgcaataacttctgggatgtttgcaattggatcttgaacaaggc 11618415  T
Q  207 gcacagtagtgataaatgtgaaaacattatttgcatggagaggaactttcaaga 260  Q
    ||| ||| | ||  ||||||||||||||| ||||||  |||||||  |||||||    
T  11618414 gcaaagttgcgaccaatgtgaaaacattacttgcattcagaggaatcttcaaga 11618361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 243
Target Start/End: Original strand, 11631742 - 11631854
Alignment:
Q  131 cgagaaaaagcaacctttgcttgaatgatcactccaataacatctccaatggttgaaataggatcttgcacaaggcgcacagtagtgataaatgtgaaaa 230  Q
    |||| ||| ||||| ||||| |||||||||||  |||| ||||||  |||  ||| ||| || ||||| |||||||||||||| |  | ||| |||||||    
T  11631742 cgagcaaatgcaacttttgcctgaatgatcaccgcaatgacatctggaatacttgtaattggctcttgaacaaggcgcacagttgccacaaaagtgaaaa 11631841  T
Q  231 cattatttgcatg 243  Q
    ||||| |||||||    
T  11631842 cattacttgcatg 11631854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 276
Target Start/End: Complemental strand, 12842 - 12697
Alignment:
Q  131 cgagaaaaagcaacctttgcttgaatgatcactccaataacatctccaatggttgaaataggatcttgcacaaggcgcacagtagtgataaatgtgaaaa 230  Q
    |||| ||| ||||| || |||||||| ||| ||  |||||||||   |||| ||||||| |||||||| ||||||  || ||| |  | |||||||||||    
T  12842 cgagcaaatgcaactttagcttgaataatcgctgtaataacatccggaatgcttgaaattggatcttgaacaaggttcaaagttgccacaaatgtgaaaa 12743  T
Q  231 cattatttgcatggagaggaactttcaagaggtaacaagccaaaaa 276  Q
    ||||| ||||||| |  ||||||| ||||| |||||| ||||||||    
T  12742 cattacttgcatgcaatggaacttccaagaagtaacatgccaaaaa 12697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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