View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_high_23 (Length: 403)
Name: NF1129_high_23
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 174 - 303
Target Start/End: Original strand, 32724754 - 32724883
Alignment:
| Q |
174 |
ggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacacaagttatttgggttaacgggctttttagaaaggggttgaaggtag |
273 |
Q |
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| T |
32724754 |
ggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacataagttatttgggttaacaggctttttagaaaggtgttgaaggtaa |
32724853 |
T |
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| Q |
274 |
tggatgttaaaagattctttctcagcattt |
303 |
Q |
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| T |
32724854 |
tggatgttaaaagattctttctcagcattt |
32724883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 32724581 - 32724693
Alignment:
| Q |
1 |
accactacgttcattccttctatttgttttttaaattaatttcagaaatagttcaacttccacttccgtgcaataacacgactaccatggcggaaatcgg |
100 |
Q |
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| T |
32724581 |
accactacgttcattccttctatctgttttttaaattaatttcagaaatagttcgacttccacttccgtgcaataacacgactaccatggcggaaatcgg |
32724680 |
T |
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| Q |
101 |
gaaatcatccatc |
113 |
Q |
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| T |
32724681 |
gaaatcatccatc |
32724693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 174 - 303
Target Start/End: Original strand, 32723299 - 32723430
Alignment:
| Q |
174 |
ggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacacaagttatttgggt--taacgggctttttagaaaggggttgaaggt |
271 |
Q |
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| T |
32723299 |
ggtttacaggtttagtagagaaacagtaatttttgttttatattaatggtgacacaagttatttgagttataacatgtttttgagaaaggtgttgaaggt |
32723398 |
T |
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| Q |
272 |
agtggatgttaaaagattctttctcagcattt |
303 |
Q |
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| T |
32723399 |
agtggatgttacaagattctttatcagcattt |
32723430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 203 - 297
Target Start/End: Original strand, 4001942 - 4002036
Alignment:
| Q |
203 |
tttttgttttgtatcaatggtgacacaagttatttgggttaacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctca |
297 |
Q |
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| T |
4001942 |
ttttttttttttatcaatggtaacgcaagttatttgggttaacatgtttttgagaaagatgttgaaggtagtggatgttaaaagattctttctca |
4002036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 178 - 303
Target Start/End: Original strand, 15720028 - 15720156
Alignment:
| Q |
178 |
tacatgtttattagagaaagagtaattttt-gttttgtatcaatggtgacacaagttatttgggtta--acgggctttttagaaaggggttgaaggtagt |
274 |
Q |
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|||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| || | |||| ||||||| |||||||||||| |
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| T |
15720028 |
tacaggtttagtagagaaagagtaattttttgttttgtattaatggtgacacaagttatttgggttataacaagtttttgagaaaggtgttgaaggtagt |
15720127 |
T |
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| Q |
275 |
ggatgttaaaagattctttctcagcattt |
303 |
Q |
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| T |
15720128 |
ggatgttacaagattctttctcagtattt |
15720156 |
T |
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