View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_high_31 (Length: 355)
Name: NF1129_high_31
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 29 - 342
Target Start/End: Complemental strand, 41557697 - 41557384
Alignment:
| Q |
29 |
aaaaaggtgcatcataaccaccattaacaatgctatgaataaatatattcggatttgtctttctaatcaaatccaaaacagcacccttcggattctccga |
128 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41557697 |
aaaaaggttcatcgtaaccaccattaacaatgctatgaataaatatattcggatttgtctttctaatcaaatccaaaacagcacccttcggattctccga |
41557598 |
T |
|
| Q |
129 |
aactactgtctcatccggtagattctcaaacttaaacaaacaattcacagcaacaaactcatttttccttatcttaaaatcttcaactttgatactttcc |
228 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
41557597 |
aactactgtctcatccagtagattctcaaacttaaacaaacaattcacagcaacaaactcgtttttccttatgttaaaatcttcaactttgatactttcc |
41557498 |
T |
|
| Q |
229 |
caattttttgcaataccattgtactcaaaaggaacattgaaacgtttgcaataacttgcaagcctaagaccagtttctttcactctctccaatgaatttg |
328 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41557497 |
caattttttgcaataccattgtactcaaaaggaacattgaaacgtttgcaataacttgcaagcctaagaccagtttctttcactctctccaatgaatttg |
41557398 |
T |
|
| Q |
329 |
gaagatctatccct |
342 |
Q |
| |
|
|||||||||||||| |
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|
| T |
41557397 |
gaagatctatccct |
41557384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 29 - 342
Target Start/End: Complemental strand, 41583826 - 41583513
Alignment:
| Q |
29 |
aaaaaggtgcatcataaccaccattaacaatgctatgaataaatatattcggatttgtctttctaatcaaatccaaaacagcacccttcggattctccga |
128 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41583826 |
aaaaaggttcatcgtaaccaccattaacaatgctatgaataaatatattcggatttgtctttctaatcaaatccaaaacatcacccttcggattctccga |
41583727 |
T |
|
| Q |
129 |
aactactgtctcatccggtagattctcaaacttaaacaaacaattcacagcaacaaactcatttttccttatcttaaaatcttcaactttgatactttcc |
228 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41583726 |
aactactgtctcatccagtagattctcaaacttaaacaaacaattcacagcaacaaactcgtttttccttatcttaaaatcttcaactttgatactttcc |
41583627 |
T |
|
| Q |
229 |
caattttttgcaataccattgtactcaaaaggaacattgaaacgtttgcaataacttgcaagcctaagaccagtttctttcactctctccaatgaatttg |
328 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41583626 |
caattttttgcaataccattgtactcaaaaggaacattgaaacgtttgcaataacttgcaagcctaagaccagtttctttcactctctccaatgaatttg |
41583527 |
T |
|
| Q |
329 |
gaagatctatccct |
342 |
Q |
| |
|
|||||||||||||| |
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|
| T |
41583526 |
gaagatctatccct |
41583513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 29 - 342
Target Start/End: Complemental strand, 41590357 - 41590044
Alignment:
| Q |
29 |
aaaaaggtgcatcataaccaccattaacaatgctatgaataaatatattcggatttgtctttctaatcaaatccaaaacagcacccttcggattctccga |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
41590357 |
aaaaaggtgcatcataaccaccattaacaatgctatgaataaatatattcggatttgccttcttaatcaaatccaaaacagcacccctcggattctccga |
41590258 |
T |
|
| Q |
129 |
aactactgtctcatccggtagattctcaaacttaaacaaacaattcacagcaacaaactcatttttccttatcttaaaatcttcaactttgatactttcc |
228 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| | |||||||||||||||| |
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|
| T |
41590257 |
aacaactgtctcatcaggtagattctcaaacttaaacacacaagtcactgcaacaaactcatttttccttatcttaaaatcctgaactttgatactttcc |
41590158 |
T |
|
| Q |
229 |
caattttttgcaataccattgtactcaaaaggaacattgaaacgtttgcaataacttgcaagcctaagaccagtttctttcactctctccaatgaatttg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |
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| T |
41590157 |
caattttttgcaataccattgtactcaaaaggaacattgaaacgtttgcaataacttgaaagcctaagacctgtttcattcactctctccaatgaatttg |
41590058 |
T |
|
| Q |
329 |
gaagatctatccct |
342 |
Q |
| |
|
|||||||||||||| |
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|
| T |
41590057 |
gaagatctatccct |
41590044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 29 - 342
Target Start/End: Complemental strand, 41571409 - 41571096
Alignment:
| Q |
29 |
aaaaaggtgcatcataaccaccattaacaatgctatgaataaatatattcggatttgtctttctaatcaaatccaaaacagcacccttcggattctccga |
128 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| ||| ||||||||||||||||||||||| | |||||||||| |
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|
| T |
41571409 |
aaaaaggtgcatcataacaaccattaacaatgctttgaacaaatatattcggatttgccttcttaatcaaatccaaaacagcaccccttggattctccgg |
41571310 |
T |
|
| Q |
129 |
aactactgtctcatccggtagattctcaaacttaaacaaacaattcacagcaacaaactcatttttccttatcttaaaatcttcaactttgatactttcc |
228 |
Q |
| |
|
| | || |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
41571309 |
agcaaccgtctcatcaagtagattctcaaatttaaaataacaattcacagcaacaaactcatttttccttatcttaaaatcctcaactttgatactttcc |
41571210 |
T |
|
| Q |
229 |
caattttttgcaataccattgtactcaaaaggaacattgaaacgtttgcaataacttgcaagcctaagaccagtttctttcactctctccaatgaatttg |
328 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||||||| ||| | |||||||||||||| |||||| |
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| T |
41571209 |
caatttttcgcaataccattgaactcaaaaggaacaccgaaacgttcgcaataagctgcaagcctaagacctgttccattcactctctccaacaaatttg |
41571110 |
T |
|
| Q |
329 |
gaagatctatccct |
342 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
41571109 |
gaagatctatccct |
41571096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 287
Target Start/End: Original strand, 23916437 - 23916537
Alignment:
| Q |
187 |
tcatttttccttatcttaaaatcttcaactttgatactttcccaattttttgcaataccattgtactcaaaaggaacattgaaacgtttgcaataacttg |
286 |
Q |
| |
|
||||||||| ||||||| || || ||||||||||| ||||||| || | ||||||| ||||| ||||||| |||||||| ||||||| ||||| |||| |
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|
| T |
23916437 |
tcatttttctttatcttcaagtcctcaactttgatggtttcccatttctgtgcaatagcattgaactcaaacggaacattaaaacgttcacaataccttg |
23916536 |
T |
|
| Q |
287 |
c |
287 |
Q |
| |
|
| |
|
|
| T |
23916537 |
c |
23916537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 23905013 - 23904977
Alignment:
| Q |
245 |
cattgtactcaaaaggaacattgaaacgtttgcaata |
281 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| |
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|
| T |
23905013 |
cattgtactcgaaaggaacattgaaacgcttgcaata |
23904977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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