View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_high_44 (Length: 289)
Name: NF1129_high_44
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_high_44 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 8e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 30 - 218
Target Start/End: Complemental strand, 26492496 - 26492309
Alignment:
| Q |
30 |
gtttttactttttgtctttcagattgagatgttatcaaggttgaaccacaagaattttgtgaatcttattggttattgtgaagagaataagccattcaca |
129 |
Q |
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| T |
26492496 |
gtttttactttttgtctttcagattgagatgttatcaaggttgaaccacaagaattttgtgaatcttattggttattgtgaagagaataagccattcaca |
26492397 |
T |
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| Q |
130 |
aggatgatggtttttgagtatgctccgaatggaacgctgtttgagcatctacatagtaagtcctgttatgtttcacaatttagttgcag |
218 |
Q |
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| T |
26492396 |
aggatgatggtttttgagtatgctccgaatggaacgctgtttgagcatctacatagtaagtcctgttatg-ttcacaatttagttgcag |
26492309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 26492143 - 26492094
Alignment:
| Q |
221 |
ttgcaggatttgcaattacacacgtattacaatgacaaatttcaacatga |
270 |
Q |
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| T |
26492143 |
ttgcaggatttgcaattacacacgtattacaatgacaaatttcaacatga |
26492094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 183
Target Start/End: Complemental strand, 32067148 - 32067026
Alignment:
| Q |
61 |
ttatcaaggttgaaccacaagaattttgtgaatcttattggttattgtgaagagaataagccattcacaaggatgatggtttttgagtatgctccgaatg |
160 |
Q |
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| T |
32067148 |
ttatcaaagatgaaccacaagaatttcgtaaatcttcttggattttgtgaagaagacgagcctttcaccagaatggtggtttttgaatatgccccaaatg |
32067049 |
T |
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| Q |
161 |
gaacgctgtttgagcatctacat |
183 |
Q |
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| T |
32067048 |
gaacactctttgaacatttacat |
32067026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 37747884 - 37747769
Alignment:
| Q |
71 |
tgaaccacaagaattttgtgaatcttattggttattgtgaagagaataagccattcacaaggatgatggtttttgagtatgctccgaatggaacgctgtt |
170 |
Q |
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| T |
37747884 |
tgaaccacaagaattttgtcaatcttattggatattgtgaagaagaagagcctttcaccagaatgttggtttttgaatatgccccaaatggaacactatt |
37747785 |
T |
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| Q |
171 |
tgagcatctacatagt |
186 |
Q |
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| T |
37747784 |
tgagcatttacatagt |
37747769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 35832247 - 35832150
Alignment:
| Q |
91 |
aatcttattggttattgtgaaga-gaataagccattcacaaggatgatggtttttgagtatgctccgaatggaacgctgtttgagcatctacatagtaa |
188 |
Q |
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|||||||||||||| ||||| || ||| || |||||||||||||||||||| || ||||||||||| ||||||| | || |||||||||||| |||| |
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| T |
35832247 |
aatcttattggttactgtgacgaagaagaa-ccattcacaaggatgatggtgttggagtatgctccaaatggaagcttattcgagcatctacatggtaa |
35832150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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