View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1129_high_57 (Length: 252)
Name: NF1129_high_57
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_high_57 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 11756099 - 11755853
Alignment:
| Q |
6 |
ctccaataatatctccaatggttgaaataggatcttgcacaaggcgcacagtagtgataaatgtgaaaacattatttgcatggagaggaactttcaagag |
105 |
Q |
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| T |
11756099 |
ctccaataacatctcctatggttgaaataggatcttgcacaaggcgcacggttgtgataaatgtgaaaacattatttgcatggagaggaactttcaagag |
11756000 |
T |
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| Q |
106 |
gtaacaagccaaaaaggtagctgcagagaccaaagtaggtgaaaaccaaaagagcataaggctgtatgccttttgtaatagcactgaagataacaatttt |
205 |
Q |
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| T |
11755999 |
gtaacaagccaaaaaggtagcagcagagaccaaagtaggtgaaaaccaaaagagcataaggctgtatgccttttgtaatagcactgaagataacaatttt |
11755900 |
T |
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| Q |
206 |
tcttcaacaattcttaggatttcaatggaatttttaaaatgcatttc |
252 |
Q |
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| T |
11755899 |
tcttcaacaattcttaggatttcaatggaatttttaaaatgcatttc |
11755853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 12093836 - 12094082
Alignment:
| Q |
6 |
ctccaataatatctccaatggttgaaataggatcttgcacaaggcgcacagtagtgataaatgtgaaaacattatttgcatggagaggaactttcaagag |
105 |
Q |
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| T |
12093836 |
ctccaataacatctccaatggttgaaataggatcttgcacaaggcgcacggttgtgataaatgtgaaaacattatttgcatggagaggaactttcaagag |
12093935 |
T |
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| Q |
106 |
gtaacaagccaaaaaggtagctgcagagaccaaagtaggtgaaaaccaaaagagcataaggctgtatgccttttgtaatagcactgaagataacaatttt |
205 |
Q |
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| T |
12093936 |
gtaacaagccaaaaaggtagcagcagagaccaaagtaggtgaaaaccaaaagagaataaggctgtatgccttttgtaataacactgaagataacaatttt |
12094035 |
T |
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| Q |
206 |
tcttcaacaattcttaggatttcaatggaatttttaaaatgcatttc |
252 |
Q |
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| T |
12094036 |
tgttcaacaattcttaggatttcaatggaatttttaaaatgcatttc |
12094082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 12795 - 12697
Alignment:
| Q |
22 |
aatggttgaaataggatcttgcacaaggcgcacagtagtgataaatgtgaaaacattatttgcatggagaggaactttcaagaggtaacaagccaaaaa |
120 |
Q |
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| T |
12795 |
aatgcttgaaattggatcttgaacaaggttcaaagttgccacaaatgtgaaaacattacttgcatgcaatggaacttccaagaagtaacatgccaaaaa |
12697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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