View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1129_high_60 (Length: 251)

Name: NF1129_high_60
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1129_high_60
NF1129_high_60
[»] chr3 (7 HSPs)
chr3 (1-175)||(50241825-50241999)
chr3 (1-175)||(52753987-52754161)
chr3 (6-175)||(14233181-14233342)
chr3 (6-155)||(39184510-39184652)
chr3 (19-137)||(34850175-34850294)
chr3 (6-155)||(40058122-40058264)
chr3 (95-175)||(2251420-2251500)
[»] chr5 (5 HSPs)
chr5 (1-175)||(9025337-9025511)
chr5 (6-155)||(27593229-27593371)
chr5 (101-137)||(19319242-19319278)
chr5 (101-175)||(30326591-30326665)
chr5 (95-155)||(23570198-23570258)
[»] chr2 (1 HSPs)
chr2 (1-175)||(31965371-31965545)
[»] chr1 (4 HSPs)
chr1 (1-175)||(49882187-49882360)
chr1 (6-94)||(15530523-15530612)
chr1 (102-175)||(19102313-19102386)
chr1 (95-175)||(21467282-21467362)
[»] chr4 (2 HSPs)
chr4 (2-175)||(314709-314882)
chr4 (27-175)||(6554948-6555096)
[»] chr8 (5 HSPs)
chr8 (1-155)||(41526578-41526732)
chr8 (6-87)||(45245663-45245745)
chr8 (6-175)||(23684429-23684591)
chr8 (95-175)||(361461-361541)
chr8 (103-159)||(12159713-12159769)
[»] scaffold0211 (1 HSPs)
scaffold0211 (16-175)||(16677-16836)
[»] scaffold0114 (1 HSPs)
scaffold0114 (1-142)||(37424-37565)
[»] scaffold0284 (1 HSPs)
scaffold0284 (1-84)||(447-530)
[»] chr6 (1 HSPs)
chr6 (55-155)||(23408840-23408938)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 50241825 - 50241999
Alignment:
Q  1 tactgagttgacaaaaacatacttattaaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataattaccccaaaactcct 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50241825 tactgagttgacaaaaacatacttattaaaatatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataattactccaaaactcct 50241924  T
Q  101 aattcttcaacaatcccacaaaattaccagcaactcatattattccatatactcttgtggtaaaagcacacactc 175  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  50241925 aattcttcaacaatcccacaaaattaccagcaactcatataattccatatactctcgtggtaaaagcacacactc 50241999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 52753987 - 52754161
Alignment:
Q  1 tactgagttgacaaaaacatacttattaaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataattaccccaaaactcct 100  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  52753987 tactgagttgacaaaaacctacttattgaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcataaaataattaccccaaaaatcct 52754086  T
Q  101 aattcttcaacaatcccacaaaattaccagcaactcatattattccatatactcttgtggtaaaagcacacactc 175  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||    
T  52754087 aattcttcaacaatcccccaaaattaccagcaactcacattattccatatactctcatggtaaaagcacacactc 52754161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 175
Target Start/End: Original strand, 14233181 - 14233342
Alignment:
Q  6 agttgacaaaa-acatacttattaaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataattaccccaaaactcctaatt 104  Q
    ||||||||||| |||| |||||| |||| ||||||||| |||||| ||| |||| |||||| |||||||| ||| | ||||||| |||||        ||    
T  14233181 agttgacaaaatacatgcttatttaaaa-tttaaattggtgttgcaattttttatttgagtttaatttgtggtatattaattactccaaa--------tt 14233271  T
Q  105 cttcaacaatcccacaaaattaccagcaactcatattattccatatactcttgtggtaaaagcacacactc 175  Q
    ||||||||| |||| |||||||||||||||  | | |||| ||||||||||| |||| |||||||||||||    
T  14233272 cttcaacaaacccataaaattaccagcaacgaacaatatttcatatactcttatggtcaaagcacacactc 14233342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 155
Target Start/End: Original strand, 39184510 - 39184652
Alignment:
Q  6 agttgacaaaa-acatacttattaaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataattaccccaaaactcctaatt 104  Q
    ||||||||||| |||| ||||||  ||| ||||||||| |||||| ||| |||||||||||||||||||| ||| | |||||        | ||| ||||    
T  39184510 agttgacaaaatacatgcttatttgaaattttaaattggtgttgcaattttttaattgagtctaatttgtggtatattaatt--------attccaaatt 39184601  T
Q  105 cttcaacaatcccacaaaattaccagcaactcatattattccatatactct 155  Q
    ||||||||| |||||||||||||| |||||  | | |||| ||||||||||    
T  39184602 cttcaacaaacccacaaaattaccggcaacgaacaatatttcatatactct 39184652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 34850294 - 34850175
Alignment:
Q  19 atacttattaaaaaatttaaattgatgttgcgattctttaattgagtctaatttgt-cgtaaaataattaccccaaaa-ctcctaattcttcaacaatcc 116  Q
    |||||||||| ||| |||||| ||||||  || || |||||||||||||| ||| | ||||||||||||||||||||| |||||||| ||||||||  ||    
T  34850294 atacttattagaaattttaaaatgatgtgacgttt-tttaattgagtctatttttttcgtaaaataattaccccaaaatctcctaatccttcaacatacc 34850196  T
Q  117 cacaaaattaccagcaactca 137  Q
      ||||||| | |||||||||    
T  34850195 tgcaaaattgcaagcaactca 34850175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 155
Target Start/End: Original strand, 40058122 - 40058264
Alignment:
Q  6 agttgacaaaa-acatacttattaaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataattaccccaaaactcctaatt 104  Q
    ||||||||||| |||| ||||||  ||| ||||||||| |||||| ||| |||||||||||||||||| | ||| | |||||        | ||| ||||    
T  40058122 agttgacaaaatacatgcttatttgaaattttaaattggtgttgcaattttttaattgagtctaatttatggtatattaatt--------attccaaatt 40058213  T
Q  105 cttcaacaatcccacaaaattaccagcaactcatattattccatatactct 155  Q
    ||||||||| |||||||||||||| |||||  | | |||| ||||||||||    
T  40058214 cttcaacaaacccacaaaattacccgcaacgaacaatattacatatactct 40058264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 2251420 - 2251500
Alignment:
Q  95 actcctaattcttcaacaatcccacaaaattaccagcaactcatattattccatatactcttgtggtaaaagcacacactc 175  Q
    ||||| |||||||||| || |||| ||||||| |||||||  | | |||||||||||||||  |||| ||| |||||||||    
T  2251420 actccaaattcttcaagaaacccataaaattatcagcaacgaacaatattccatatactctcatggtcaaaacacacactc 2251500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 9025337 - 9025511
Alignment:
Q  1 tactgagttgacaaaaacatacttattaaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataattaccccaaaactcct 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9025337 tactgagttgacaaaaacatacttattaaaaaatttaaatcgatgttgcaattctttaattgagtctaatttgtcgtaaaataattaccccaaaactcct 9025436  T
Q  101 aattcttcaacaatcccacaaaattaccagcaactcatattattccatatactcttgtggtaaaagcacacactc 175  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||    
T  9025437 aattcttcaacaatcccacaaaattaccagcaactcacattattccatatactctcatggtaaaagcacacactc 9025511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 155
Target Start/End: Complemental strand, 27593371 - 27593229
Alignment:
Q  6 agttgacaaaa-acatacttattaaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataattaccccaaaactcctaatt 104  Q
    ||||||||||| |||| ||||||  ||| ||||||||| |||||| ||| |||||||||||||||||||| ||| | |||||        | ||| ||||    
T  27593371 agttgacaaaatacatgcttatttgaaattttaaattggtgttgcaattttttaattgagtctaatttgtggtatattaatt--------attccaaatt 27593280  T
Q  105 cttcaacaatcccacaaaattaccagcaactcatattattccatatactct 155  Q
    ||||||||| |||||||||||||| |||||  | | |||| ||||||||||    
T  27593279 cttcaacaaacccacaaaattacccgcaacgaacaatatttcatatactct 27593229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 19319278 - 19319242
Alignment:
Q  101 aattcttcaacaatcccacaaaattaccagcaactca 137  Q
    ||||||||||||| |||||||||||||||||||||||    
T  19319278 aattcttcaacaaacccacaaaattaccagcaactca 19319242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 30326665 - 30326591
Alignment:
Q  101 aattcttcaacaatcccacaaaattaccagcaactcatattattccatatactcttgtggtaaaagcacacactc 175  Q
    |||||||||| || |||| |||||||||||||||  | | |||||||||||||||   ||| |||||||||||||    
T  30326665 aattcttcaagaaacccataaaattaccagcaacaaacaatattccatatactctcacggtcaaagcacacactc 30326591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 23570258 - 23570198
Alignment:
Q  95 actcctaattcttcaacaatcccacaaaattaccagcaactcatattattccatatactct 155  Q
    ||||| |||||||||| || |||| |||||||||||||||  | | |||||||||||||||    
T  23570258 actccaaattcttcaagaaacccataaaattaccagcaacgaacaatattccatatactct 23570198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 31965545 - 31965371
Alignment:
Q  1 tactgagttgacaaaaacatacttattaaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataattaccccaaaactcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31965545 tactgagttgacaaaaacatacttattaaaaaatttaaattgatgttgcgattctttaattgaatctaatttgtcgtaaaataattaccccaaaactcct 31965446  T
Q  101 aattcttcaacaatcccacaaaattaccagcaactcatattattccatatactcttgtggtaaaagcacacactc 175  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||||||||||||    
T  31965445 aattcttcaacaatcccacaaaattacgagcaactcacattattccatatactctcatggtaaaagcacacactc 31965371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 49882187 - 49882360
Alignment:
Q  1 tactgagttgacaaaaacatacttattaaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataattaccccaaaactcct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  49882187 tactgagttgacaaaaacatacttattaaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataattaccccaaaactctt 49882286  T
Q  101 aattcttcaacaatcccacaaaattaccagcaactcatattattccatatactcttgtggtaaaagcacacactc 175  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |  |||||||||||||||||    
T  49882287 aattcttcaacaatcccgcaaaattaccagcaactcacattattccatatactc-tcaggtaaaagcacacactc 49882360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 15530523 - 15530612
Alignment:
Q  6 agttgacaaaa-acatacttattaaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataattaccccaaa 94  Q
    ||||||||||| |||| |||||| |||| ||||||||| |||||| ||| |||| ||||||||||||| | ||| | ||||||| |||||    
T  15530523 agttgacaaaatacatgcttatttaaaattttaaattggtgttgcaattttttatttgagtctaatttttggtatattaattactccaaa 15530612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 19102386 - 19102313
Alignment:
Q  102 attcttcaacaatcccacaaaattaccagcaactcatattattccatatactcttgtggtaaaagcacacactc 175  Q
    ||||||||| || |||| |||||||||||||||  | | |||||||||||||||   ||| |||||||||||||    
T  19102386 attcttcaagaaacccataaaattaccagcaacgaacaatattccatatactctcacggtcaaagcacacactc 19102313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 21467362 - 21467282
Alignment:
Q  95 actcctaattcttcaacaatcccacaaaattaccagcaactcatattattccatatactcttgtggtaaaagcacacactc 175  Q
    ||||| |||||||||| || |||| ||||||| |||||||  | | |||||||||||||||   ||| |||||||||||||    
T  21467362 actccaaattcttcaagaaacccataaaattatcagcaacgaacaatattccatatactctcacggtcaaagcacacactc 21467282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 2 - 175
Target Start/End: Original strand, 314709 - 314882
Alignment:
Q  2 actgagttgacaaaaacatacttattaaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataattaccccaaaactccta 101  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  314709 actgaattgacaaaaacatacttattaaaaaatttaaattgatgttgcaattctttaattgagtctaatttatcgtaaaataattaccccaaaactccta 314808  T
Q  102 attcttcaacaatcccacaaaattaccagcaactcatattattccatatactcttgtggtaaaagcacacactc 175  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||  ||| ||||||||||||||    
T  314809 attcttcaacaatcccacaaaattaccagcaactcacattattccacatactctcatggaaaaagcacacactc 314882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 27 - 175
Target Start/End: Original strand, 6554948 - 6555096
Alignment:
Q  27 taaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataattaccccaaaactcctaattcttcaacaatcccacaaaatta 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6554948 taaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataattaccccaaaactcctaattcttcaacaatcccacaaaatta 6555047  T
Q  127 ccagcaactcatattattccatatactcttgtggtaaaagcacacactc 175  Q
    ||||||||||| |||||||||||||||||  ||||||||||| ||||||    
T  6555048 ccagcaactcacattattccatatactctcatggtaaaagcatacactc 6555096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 41526732 - 41526578
Alignment:
Q  1 tactgagttgacaaaaacatacttattaaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataattaccccaaaactcct 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  41526732 tactgagttgacaaaaatatacttattaaaaaatttaaattgatgttgcgattctttaattgagtctaatttatcgtaaaataattacccaaaaactcct 41526633  T
Q  101 aattcttcaacaatcccacaaaattaccagcaactcatattattccatatactct 155  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  41526632 aattcttcaacaattccacaaaattaccagcaactcacattattccatatactct 41526578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 45245663 - 45245745
Alignment:
Q  6 agttgacaaaa-acatacttattaaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataatta 87  Q
    ||||||||||| |||| |||||| |||| ||||||||| |||||| ||| |||||||||||||||||||| ||| | ||||||    
T  45245663 agttgacaaaatacatgcttatttaaaattttaaattggtgttgcaattttttaattgagtctaatttgtggtatattaatta 45245745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 175
Target Start/End: Original strand, 23684429 - 23684591
Alignment:
Q  6 agttgacaaaa-acatacttattaaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataattaccccaaaactcctaatt 104  Q
    ||||||||||| |||| |||||| |||| ||||||||| |||||| ||| |||| ||||||||||||| | ||| | |||||        ||||| ||||    
T  23684429 agttgacaaaatacatgcttatttaaaattttaaattggtgttgcaattttttatttgagtctaatttttggtatattaatt--------actccaaatt 23684520  T
Q  105 cttcaacaatcccacaaaattaccagcaactcatattattccatatactcttgtggtaaaagcacacactc 175  Q
    |||||| || |||| |||||||||||||||  | | |||| ||||||||||   ||| |||||||||||||    
T  23684521 cttcaaaaaacccataaaattaccagcaacgaacaatatttcatatactctcacggtcaaagcacacactc 23684591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 361461 - 361541
Alignment:
Q  95 actcctaattcttcaacaatcccacaaaattaccagcaactcatattattccatatactcttgtggtaaaagcacacactc 175  Q
    ||||| |||||||||| || |||| |||||||||||||||  | | |||||||||||||||   ||| |||||||||||||    
T  361461 actccaaattcttcaagaaacccataaaattaccagcaacgaacaatattccatatactctcacggtcaaagcacacactc 361541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 12159713 - 12159769
Alignment:
Q  103 ttcttcaacaatcccacaaaattaccagcaactcatattattccatatactcttgtg 159  Q
    ||||||||||| | || || ||||||| ||||||  |||||||||||||||||||||    
T  12159713 ttcttcaacaaactcataatattaccaacaactctcattattccatatactcttgtg 12159769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 16836 - 16677
Alignment:
Q  16 aacatacttattaaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataattaccccaaaactcctaattcttcaacaatc 115  Q
    ||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16836 aacatacttataaaaaaaattaaattgatgttgcgattcttgaattgagtctaatttgtcgtaaaataattaccccaaaactcctaattcttcaacaatc 16737  T
Q  116 ccacaaaattaccagcaactcatattattccatatactcttgtggtaaaagcacacactc 175  Q
     || |||||||||||||||||| |||||||||||||||||  |  |||||||||||||||    
T  16736 tcataaaattaccagcaactcacattattccatatactctcattataaaagcacacactc 16677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 37424 - 37565
Alignment:
Q  1 tactgagttgacaaaaacatacttattaaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataattaccccaaaactcct 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37424 tactgagttgacaaaaacatacttattagaaaatttaaattgatgttgcggttctttaattgagtctgatttgtcgtaaaataattaccccaaaactcct 37523  T
Q  101 aattcttcaacaatcccacaaaattaccagcaactcatatta 142  Q
    ||||||||||||||||||||||||||| || |||||| ||||    
T  37524 aattcttcaacaatcccacaaaattactaggaactcacatta 37565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 530 - 447
Alignment:
Q  1 tactgagttgacaaaaacatacttattaaaaaatttaaattgatgttgcgattctttaattgagtctaatttgtcgtaaaataa 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  530 tactgagttgacaaaaacatacttattaaaaaatttaaattgatgttgtgattctttaattgagtctaatttgtcgtaaaataa 447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 23408938 - 23408840
Alignment:
Q  55 tttaattgagtctaatttgtcgtaaaataattaccccaaaa-ctcctaattcttcaacaatcccacaaaattaccagcaactcatattattccatatact 153  Q
    |||||||||||||||||| | |  ||||||  ||||||||| |||| ||||||||||||| || || |||||||||| ||||||| ||||| | ||||||    
T  23408938 tttaattgagtctaattttttggtaaataa--accccaaaatctccaaattcttcaacaaacctac-aaattaccagtaactcattttatttcctatact 23408842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University