View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1129_high_67 (Length: 240)
Name: NF1129_high_67
Description: NF1129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1129_high_67 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 47720539 - 47720332
Alignment:
| Q |
14 |
atattcaagcccttccattgttctacctcctatatattcatcaccaaacttccccttaaaaaattgtcctccatggtggagttctacttgaaatctaggg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47720539 |
atattcaagcccttccattgttctacctcctatatattcattaccaaacttccccttaaaaaattgtcctccatggtggagttctacttgaaatttaggg |
47720440 |
T |
|
| Q |
114 |
tcatccgtcgac-tgatatgaataataacaagaacaacaagctcaagatatcaacaacaataagaataaactcatattaaaaataaaaagaataacatca |
212 |
Q |
| |
|
||||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47720439 |
tcatccgtctccgtgatataaataataacaagaacaacaagctcaaaatatcaacaacaataagaataaactcatattaacaataaaaagaataacatca |
47720340 |
T |
|
| Q |
213 |
atgatagt |
220 |
Q |
| |
|
|||||||| |
|
|
| T |
47720339 |
atgatagt |
47720332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 47727531 - 47727324
Alignment:
| Q |
14 |
atattcaagcccttccattgttctacctcctatatattcatcaccaaacttccccttaaaaaattgtcctccatggtggagttctacttgaaatctaggg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47727531 |
atattcaagcccttccattgttctacctcctatatattcattaccaaacttccccttaaaaaattgtcctccatggtggagttctacttgaaatttaggg |
47727432 |
T |
|
| Q |
114 |
tcatccgtcgac-tgatatgaataataacaagaacaacaagctcaagatatcaacaacaataagaataaactcatattaaaaataaaaagaataacatca |
212 |
Q |
| |
|
||||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47727431 |
tcatccgtctccgtgatataaataataacaagaacaacaagctcaaaatatcaacaacaataagaataaactcatattaacaataaaaagaataacatca |
47727332 |
T |
|
| Q |
213 |
atgatagt |
220 |
Q |
| |
|
|||||||| |
|
|
| T |
47727331 |
atgatagt |
47727324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 47753460 - 47753258
Alignment:
| Q |
14 |
atattcaagcccttccattgttctacctcctatatattcatcaccaaacttccccttaaaaaattgtcctccatggtggagttctacttgaaatctaggg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||| ||| |||| ||||| |
|
|
| T |
47753460 |
atattcaagcccttccattgttctacctcctatatattcattaccaaacttcccatttaaaaattgtcctccatggtggagttctgcttcaaatataggg |
47753361 |
T |
|
| Q |
114 |
tcatccgtcgac-tgatatgaataataacaagaacaacaagctcaagatatcaacaacaataagaataaactcatattaaaaataaaaagaataacatca |
212 |
Q |
| |
|
||||||||| | | |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| |||| || |
|
|
| T |
47753360 |
tcatccgtctccgtaatataaataataacaagaacaacaagctcaaaatatcaacaacaataagaataaactcatattaataataagaagaacaacaaca |
47753261 |
T |
|
| Q |
213 |
atg |
215 |
Q |
| |
|
||| |
|
|
| T |
47753260 |
atg |
47753258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University